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Target CDS Information

Gene Symbol (Gene ID) Wnk2 (ENSMUSG00000037989)
Cross Reference
EMBL AC160126, CT010439
GO GO:0003674, GO:0005737, GO:0006468, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Wnk2-004
OTTP OTTMUSP00000048644
OTTT OTTMUST00000089107
UCSC uc007qiv.1
UniParc UPI0001DD36F6
Uniprot/SPTREMBL F6SRP4
Vega_transcript OTTMUST00000089107, Wnk2-004
Vega_translation 214433, OTTMUSP00000048644
Definition protein_id:ENSMUSP00000124598
translation:
KSLDEKLRTLLYQEHVPTSSASAGTPMEASDRDFTLEPLRGDLPSALSDKTPSLTQQTQP
SLEKSETAPAGWALAQREQGASSPMTAESSSSNTLGCDSDAGQVASDSSTAPSVPQDASG
SSVPTHMDPKDQNSSVPREALAAPMQSGPGSFTVGSPAQLRGARDSGSPHKRPGQQDNSS
PAKTVGRFSVVSTQDEWTLASPHSLRYSAPPDVYLDEIPSSPEVKLAVRRVQTASSIEVG
VEEPASSDSGDERPRRRSQVQKQSSLPGTGGVASDFVKKATAFLHRSSRAGSLGPETPSR
AGVKVPTISITSFHSQSSYISSDNDSEFEDADIKKELRSLREKHLKEISELQSQQKQEIE
ALYRRLGKPLPPNVGFFHTAPPMGRRRKTSKSKLKAGKLLNPLVQQLKVVASSTGHLSDS
SRGPPTKDPAHASTPPGTKAVQTQQPCSVRASLSTDICSGLASDGGGARGQGWTVYHPTS
ERGAYKSSSKPRARFLSGPVSVSIWSALKRLCLGKEHSSRSSTSSLAPGPEPGPQPTLHV
QAQVNNSNNKKGTFTDDLHKLVDEWTTKTVGAAQVKPTLNQLKQTQKLHDMEASGDARAT
SVPRAAVGASCLAPAPGPLSTTATPGATPALPVPIPGTVHSSLSGPPCTLPLCQYGGLLP
DPVSWGPWVASGNPEGSWGSQSPTQVPVFPVFLRPPVISTPGPRLHIT

Chromosome 13
Length
Position(start - end)
22,008
49,038,874 - 49,060,883
Orient to Chromosome minus
Link Location : (13:49038874-49060883)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Wnk2 (ENSMUSG00000037989)
Transcript ID ENSMUST00000159196
Reports
substitution
cSNPs8
Insertion11
Deletion17
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num5
non-synonymous num3
synonymous substitutions 49056885 (p.Ser326Ser), 49057245 (p.Arg206Arg), 49057425 (p.Gln146Gln), 49057491 (p.Pro124Pro), 49057681 (p.Asn93Asn),
non-synonymous substitutions 49042630 (p.Ala599Thr), 49042807 (p.Val540Ile), 49057436 (p.Ala143Thr),
B6 transcript
(ENSMUST00000159196)
KSLDEKLRTLLYQEHVPTSSASAGTPMEASDRDFTLEPLRGDLPSALSDKTPSLTQQTQP
SLEKSETAPAGWALAQREQGASSPMTAESSSSNTLGCDSDAGQVASDSSTAPSVPQDASG
SSVPTHMDPKDQNSSVPREALAAPMQSGPGSFTVGSPAQLRGARDSGSPHKRPGQQDNSS
PAKTVGRFSVVSTQDEWTLASPHSLRYSAPPDVYLDEIPSSPEVKLAVRRVQTASSIEVG
VEEPASSDSGDERPRRRSQVQKQSSLPGTGGVASDFVKKATAFLHRSSRAGSLGPETPSR
AGVKVPTISITSFHSQSSYISSDNDSEFEDADIKKELRSLREKHLKEISELQSQQKQEIE
ALYRRLGKPLPPNVGFFHTAPPMGRRRKTSKSKLKAGKLLNPLVQQLKVVASSTGHLSDS
SRGPPTKDPAHASTPPGTKAVQTQQPCSVRASLSTDICSGLASDGGGARGQGWTVYHPTS
ERGAYKSSSKPRARFLSGPVSVSIWSALKRLCLGKEHSSRSSTSSLAPGPEPGPQPTLHV
QAQVNNSNNKKGTFTDDLHKLVDEWTTKTVGAAQVKPTLNQLKQTQKLHDMEASGDARAT
SVPRAAVGASCLAPAPGPLSTTATPGATPALPVPIPGTVHSSLSGPPCTLPLCQYGGLLP
DPVSWGPWVASGNPEGSWGSQSPTQVPVFPVFLRPPVISTPGPRLHIT*
MSMv4 transcript
KSLDEKLRTLLYQEHVPTSSASAGTPMEASDRDFTLEPLRGDLPSALSDKTPSLTQQTQP
SLEKSETAPAGWALAQREQGASSPMTAESSSSNTLGCDSDAGQVASDSSTAPSVPQDASG
SSVPTHMDPKDQNSSVPREALATPMQSGPGSFTVGSPAQLRGARDSGSPHKRPGQQDNSS
PAKTVGRFSVVSTQDEWTLASPHSLRYSAPPDVYLDEIPSSPEVKLAVRRVQTASSIEVG
VEEPASSDSGDERPRRRSQVQKQSSLPGTGGVASDFVKKATAFLHRSSRAGSLGPETPSR
AGVKVPTISITSFHSQSSYISSDNDSEFEDADIKKELRSLREKHLKEISELQSQQKQEIE
ALYRRLGKPLPPNVGFFHTAPPMGRRRKTSKSKLKAGKLLNPLVQQLKVVASSTGHLSDS
SRGPPTKDPAHASTPPGTKAVQTQQPCSVRASLSTDICSGLASDGGGARGQGWTVYHPTS
ERGAYKSSSKPRARFLSGPVSVSIWSALKRLCLGKEHSSRSSTSSLAPGPEPGPQPTLHI
QAQVNNSNNKKGTFTDDLHKLVDEWTTKTVGAAQVKPTLNQLKQTQKLHDMEASGDARTT
SVPRAAVGASCLAPAPGPLSTTATPGATPALPVPIPGTVHSSLSGPPCTLPLCQYGGLLP
DPVSWGPWVASGNPEGSWGSQSPTQVPVFPVFLRPPVISTPGPRLHIT*
homology99.58 (709 / 709)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Wnk2 (ENSMUSG00000037989)
Transcript ID ENSMUST00000159196
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TGTTTCCCTCAACACCTTCACCTTGTAAATTCATGTTCAAGTTTTGTCTA
GCATAGACACTGCAGGTAGATGGGTGGTCATACAAAGGCCACACGTGACAAGTGCTGGAA
CCAGATGTCAAGAACAGGATGGTATAGAATACCATAGGGTACTCTGTAGGGGCAGAGGTT
CATATGTGAGCATCATCCCACGAGGCTGATGGCACTGGACATGAGGGGACAGAATGGCAG
ACAGGAACTTGACCCCTTTGGGGGAACCAAGATAAGTTTGCTGGAGTCTCAAGCAGGTAG
TCATTGGTGTAGACAGGGAAGGGCTGGATGAAGAGAATCGGGGCAAATGATGTCAATCCC
TTTTTCTTCTAGACCCAGCGCCCTATCCAGACCAGCTGTCCTTGACGGACAAACCTAGTT
TCCCAGCTGCTCAGCAGCTCCTGAGCCAGGCAGGCTCCAGCAACCCTCCTGGTGGAGCAT
CAGCCCCCTTGGCCCCGTCTTCCCCTCCTGTGACTACTGTAATCCCGGCAGCACCAGCCA
CCAGCACCGTGCCAGAGTCAGCAGCAGGGACTGCCATGCAGGCAGGAGGTCCAGGGACTC
ATCAAGGACCAGCCAGTGTCCATGAGACCCTCCAGCCACTGGCCGAGACACACTCTGCCC
AGTGTACTGCCCAGCCCCTTAGTACTGGCCAAGGACCTTGCACCCCAGCTCTGGAAGCCT
CTCGCTGCTCCACAGGTCTGGGGGAGCCCATCTCAACCAGGGAGGTCAGCACTCAAGGAG
AGCCCCTGCCTGCTTCAGTGCCAGAACCTAGCCCTCCCACTGGGGCCACACAATCTGTAC
CGGGTCAGCCACCACCCCCACTGCCCATCACAGTAGGGGCTATCAGTCTGGCAGCTCCCC
AGCTCCCCAGTCCCCCCCTGGGACCTACTGCTCCCCCACCACCCCCCTCAGCCTTGGAAT
CTGATGGGGAAGGGCCACCCCCTAGGGTGGGCTTCGTGGACAACACCATC
1 EXON 1 49,060,701 49,060,883 - 0 183
AAGAGTCTGGATGAGAAACTGCGGACTCTGCTCTACCAGGAGCACGTGCCCACCTCCTCA
GCCTCAGCTGGGACCCCCATGGAGGCAAGCGATAGAGACTTCACCCTGGAGCCCCTGCGA
GGAGACCTTCCCTCAGCCTTGAGTGACAAGACCCCAAGCCTCACCCAGCAGACCCAGCCC
TCA
INTRON 1 - 2 49,060,427 49,060,700 274
GTGAGTAGCTTGATTCACCCTAGTA..........CCTTTTCTTGTTTTTCTTCTTTCAG
2 EXON 2 49,060,351 49,060,426 0 1 76
TTGGAAAAGTCTGAAACGGCCCCTGCAGGATGGGCCCTGGCCCAGAGGGAACAGGGTGCA
TCTTCTCCAATGACAG
INTRON 2 - 3 49,057,701 49,060,350 2,650
GTAACATCTCAAGATCAAAGTGATG..........CAGTAATGCAGTTGTGTTCCTACAG
3 EXON 3 49,057,612 49,057,700 1 0 89
CAGAGTCATCTTCCAGCAACACACTGGGCTGTGACAGTGACGCAGGGCAGGTGGCCTCGG
ACTCCTCCACAGCACCCAGTGTCCCCCAG
INTRON 3 - 4 49,057,515 49,057,611 97
GTAAAGGAGGCTCTTGATACACACT..........CTCTTCATTTCTATTCCTCCTTCAG
4 EXON 4 49,056,835 49,057,514 0 2 680
GATGCCTCTGGTTCTTCCGTCCCCACACACATGGATCCCAAAGATCAGAACAGTAGTGTT
CCCAGAGAAGCCTTGGCAACACCCATGCAGAGTGGCCCAGGGTCCTTCACAGTGGGCAGC
CCAGCCCAGCTGCGTGGCGCCCGGGACTCCGGGTCTCCTCATAAGCGGCCAGGGCAGCAG
GACAACAGTTCTCCAGCCAAAACTGTAGGGCGCTTTTCCGTGGTCAGCACACAGGACGAG
TGGACTCTGGCGTCACCTCACAGCCTGCGATACTCTGCCCCACCCGATGTCTACCTGGAT
GAGATCCCCTCTAGCCCTGAGGTGAAGCTGGCAGTGCGGCGGGTACAGACAGCCTCCTCC
ATCGAGGTTGGCGTTGAGGAACCTGCCTCTAGTGACTCTGGGGATGAACGCCCAAGAAGG
AGGTCCCAGGTGCAGAAGCAGTCCTCCCTGCCGGGTACTGGTGGTGTGGCAAGTGACTTT
GTGAAGAAGGCCACTGCCTTCCTGCACAGGTCTTCAAGGGCTGGCTCGCTGGGACCTGAG
ACACCCAGTAGGGCAGGTGTGAAGGTCCCTACCATCAGCATCACCTCCTTCCACTCCCAG
TCATCCTACATCAGCAGTGACAATGACTCGGAGTTTGAGGATGCAGACATAAAGAAGGAA
CTGCGCAGTCTGCGAGAAAA
INTRON 4 - 5 49,052,774 49,056,834 4,061
GTACGTTTGGGAGGGCATGGCTCAC..........CCCTGCCTCCTCTCTTCTGCTCCAG
5 EXON 5 49,052,559 49,052,773 2 1 215
GCACCTGAAGGAAATCTCGGAGCTACAGAGCCAGCAGAAGCAGGAGATCGAAGCCCTGTA
CCGACGCTTGGGCAAGCCGCTCCCTCCCAATGTGGGGTTCTTCCACACTGCACCCCCTAT
GGGCCGCAGGAGGAAAACCAGCAAGAGCAAATTGAAGGCTGGCAAGCTGCTGAACCCCTT
GGTGCAACAGCTCAAGGTCGTGGCCTCCAGCACAG
INTRON 5 - 6 49,051,528 49,052,558 1,031
GTCTGCTGCTTCTATGGGAGGGCCA..........CACCTCTTCTCCCCCCCTCGCCCAG
6 EXON 6 49,051,357 49,051,527 1 1 171
GTCATTTGTCTGACTCCAGCAGAGGCCCTCCCACTAAGGACCCTGCCCACGCCAGCACGC
CCCCGGGCACCAAGGCAGTTCAGACCCAGCAGCCCTGCTCCGTTCGGGCCTCTCTGTCCA
CAGACATCTGCTCCGGTTTAGCCAGTGATGGAGGCGGAGCGCGTGGCCAAG
INTRON 6 - 7 49,050,583 49,051,356 774
GTGATTTCCAGCTTGCCTGTCTCCA..........CTCTTCCCTTTATATTCATTTGCAG
7 EXON 7 49,050,484 49,050,582 1 1 99
GCTGGACGGTTTACCACCCAACGTCTGAGAGAGGGGCCTATAAGTCTAGTAGCAAGCCTC
GTGCTCGATTCCTCAGTGGACCCGTATCTGTGTCCATCT
INTRON 7 - 8 49,044,419 49,050,483 6,065
GTCTGTATTTGTTCTTTTGTATTTT..........TGTGTCCTTTGTTCTTCCCTTACAG
8 EXON 8 49,044,374 49,044,418 1 1 45
GGTCAGCCCTGAAGCGTCTCTGCCTAGGCAAAGAACACAGCAGTA
INTRON 8 - 9 49,042,867 49,044,373 1,507
GTAATTATCTGGGTTTTTTTTTTAA..........AATCCTGGCCTATATGACTCCCCAG
9 EXON 9 49,042,628 49,042,866 1 0 239
GGTCTTCCACCAGCAGCCTGGCCCCAGGCCCTGAGCCAGGTCCCCAGCCCACCCTGCACA
TCCAGGCGCAGGTGAACAACAGCAACAACAAGAAAGGCACCTTCACGGACGACCTGCACA
AGTTGGTGGACGAGTGGACAACGAAGACCGTGGGGGCAGCGCAAGTGAAGCCCACGCTCA
ACCAGCTGAAGCAGACGCAGAAGCTGCACGACATGGAGGCCTCTGGAGACGCTCGGACT
INTRON 9 - 10 49,039,204 49,042,627 3,424
GTGAGTGAGCACGGACACTGACTCT..........TCCTTTTTGTTTCTGTGTCTCATAG
10 EXON 10 49,037,609 49,039,203 0 - 1,595
ACATCTGTGCCTCGAGCAGCAGTGGGGGCATCGTGTCTGGCCCCGGCCCCTGGCCCTCTG
TCCACCACAGCCACTCCTGGAGCCACTCCAGCCCTGCCTGTGCCCATACCAGGTACTGTC
CACTCCAGCCTCTCAGGCCCTCCTTGTACACTGCCTCTATGTCAGTATGGAGGCCTGCTC
CCTGATCCTGTGTCCTGGGGACCCTGGGTGGCCTCAGGAAACCCAGAAGGGTCTTGGGGC
AGTCAGAGCCCCACTCAGGTCCCTGTGTTCCCAGTGTTTCTACGGCCACCTGTTATCAGC
ACACCAGGCCCCCGGCTGCACATCACGTAGCCTCCTGCCCTGCCCTGCCCCTGGCCAAAT
GGAACACTCTGAAGCGTGTAGAAGAACCCAGTTGTGGTTTGGCCTCCTCATGGCTCCTCC
ACATGGGCACAAGGCACAGAGCCCCAGCCCAGGGGGCATGAGAGGGCAGCAAGACACTTT
CCCTGCTGCCTCAGACCCCGTCACTCTTAGGTTCCTGCAGTCTACAGAGGCAGTCCTCAC
ACCCAGGGCCTGCCCTTGTTAGAGGATTAGAACCTTGTCATCCCCTGCAGCAGCTCAGTG
CCTTGAATCCCAGCTTTTCTGTTTCCATGATGGAAATACATGTTTTAAAAGGCCATTCAT
CCGCAAAAGCGGATTCCATTACAGTGGCATGCGTATGGCTGTCTCCACTGTGTTATGTTG
TAGAGGTGGGAATTGGGTACAGATATGAAGCTGGTAACTAGTGAGAGTGTAAAAGCCCTC
TATACAGAAACAAAGGGAACACTGACAATGTGACCTGGAAATGCTGGTTAGGTCCAGCTC
AGTCCTTGATAGAGCGAGGTCACCCTGGGTGTCTTCAGTAACAGAGCCACCACGAGGTTT
ACCTGAAGTTGTTCTCCCTGTGAGGAGTGTCACCAGCTTTGTTGAGCCGTGAGGATCCTG
CCAGGTGAATACCCTGATAGCCAGCAGGCTGTTGTAAGCACCATACAGACAAACATGACC
TTCCAGCTCAGGGGCCCCACTCACTCTCTCCCTCTTTTCCATGGTTTTCAGAGGCCTGTG
CTCTGCCCACCCCACCCTGCAAATTCCTCTCCAGGCCATCCTCAGGCCAGCCTACTGAGG
GGCGGAGCATTTCTGGAGGTTTCCATGACACTTGCCCTGGGGGGGAGCGGGGAGATGAAA
ACTCCCTGACCCCCTCTGGGTGAATATTTTCTGCCTCCAGTTGGAGGGTGGGCTGCCTGG
GGTGACCCCCGCTGTGAACTGTACAGATCAGATGTACCCAGGAGAAGCAGCTAGATTATT
TTGGTTTAAATACACTACTCCATCAATTCAGTCAGAATTGAATTTCCAGGGGACTGCAGA
GGCTTCTCCCTGGCCGCAATGCTGCAATAAGAGATTTCTGTTCTCTGTGTCTTAGTCTCA
ACACCACACAGGCCCATTCAGTAAAGCGGAGCCTACGTCGTCTTGCTCCTCTTGTGCCCA
AGTCCTTTCCTCCTGTGACAATGCTAGTGGCATGGGATCCCCAAGAGTCTGTATGTGTGA
AGGAGAAAAATAAACGTTTGCTTGAAAATACTGTG
3' upstream sequence
AAATGGCAGCTTTTGTTCTTGCCCCCTACTTACATCAAAGCCAAGCTGACTGGCCTTGTA
GAAGATAGTTCTGGGCGGCCCAAGTGGGCCTGGCCTGGCCTCTGCTTGGAGCCACTAGCC
ATGTGTCCTGTACCCCAGAGGACGGGACTCAGGACACTGGGAGATAAGAGGAAAGCCTCT
GCTGGGGTTGCTGGTCGCTCAGCACTGGTACTGCTGGGGGTGGCCCAGACCCACTGTCAC
CAGGCTGTTAGTTGTAGCCTGGCATTGCAGCCTACTCTGCCGTCTGTTGGCTGCTCTGCA
AGCCACTACGCATCAGCAGGCATTGCTTTCAGAAGTGCAGGTAGAAAGGGCAAACCTTGG
CAGAGGGCAGCCTGCGTCTCCAATCCCACCAGAGCTGGCACTGGATCCTAGAAAACCCAG
GTTGTATGAGTCATAAGAACTCCTGCTCCCCTCCCCCATGGCTTGAGGGGCTTTTCTTTC
AGGCTCTTGAGCTTTGTTGAGTAGAGTTGGGCAGGGGCCAGCCTAGCTCATATGAGAGGC
ACTGGCCTTCCTAAGAATCCAGTTATGAAAGATGCTGGTTTAGGAAGAGGACTTGTCCTG
TGGTAGTTCAGCAAATCCTTTGGGGACTGCCTTATATGTGTGCACTGTAGACCTGGTCCA
GGCAACATGAGACCCTTCCTGCTAGAGGTGCTGTCTCAAGATATAGCACCGGGCTTGCTG
CCTCTGTTCAGACCCTTAGCACTGGTGCTAAGCAGAAACTGAGACACTGTTTTCTCCCAG
GGCTCCAAGGCCAGCTTAATCCAGAATGGTCCAGTGGGACAGGGGTGAGACCTCATCTCT
CTGGGCTTATGTGGTCATCACTGAGTGTCTGGCTGTTCTTAGAAGATATCCAGGTGGCAG
TCATCCCAGCTCTGTGCAGAGAGCAGGGCTGACTGTACAGGGCACAGCCACCTCCTGGCA
TGGCTCTGACCCCACCCTTCTTCCTTTGCTATAGAAGCCA..........

Sequence Detail Report

Gene Symbol (Gene ID) Wnk2 (ENSMUSG00000037989)
Transcript ID ENSMUST00000159196
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 709 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information