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Target CDS Information

Gene Symbol (Gene ID) Zfp346 (ENSMUSG00000021481)
Cross Reference
EMBL AC123709, AC154610
GO GO:0003725, GO:0005515, GO:0005634, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name Zfp346-004
OTTP OTTMUSP00000048656
OTTT OTTMUST00000089119
RefSeq_peptide_predicted XP_006517322.1
UCSC uc007qpy.1
UniParc UPI0001DD3534
Uniprot/SPTREMBL E9Q7N8
Vega_transcript OTTMUST00000089119, Zfp346-004
Vega_translation 214560, OTTMUSP00000048656
Definition protein_id:ENSMUSP00000125078
translation:
MECPAPDATDAADPGEAGPYKGSEEPEGREPDGVRFDRERARRLWEAVSGAQPAGREEVE
HMIQKNQCLFTSTQCKVCCAMLISESQKLAHYQSKKHANKVKRYLAIHGMETIKGDVKRL
DSDQKSSRSKDKNHCCPICNMTFSSPAVAQSHYLGKTHAKSLKLKQQSTKGAALSKHLTN
PFLVASTLALQQNREMLDPDKFCSLCHSTFNDPAMAQQHYMGKRHRKQETKLKLMAHYGR
LADPAVSDLPGKGYPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTLVTLGSQTPVQTQPT
PKDSSTVQD

Chromosome 13
Length
Position(start - end)
27,049
55,105,344 - 55,132,394
Orient to Chromosome plus
Link Location : (13:55105344-55132394)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Zfp346 (ENSMUSG00000021481)
Transcript ID ENSMUST00000159278
Reports
substitution
cSNPs0
Insertion30
Deletion21
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000159278)
MECPAPDATDAADPGEAGPYKGSEEPEGREPDGVRFDRERARRLWEAVSGAQPAGREEVE
HMIQKNQCLFTSTQCKVCCAMLISESQKLAHYQSKKHANKVKRYLAIHGMETIKGDVKRL
DSDQKSSRSKDKNHCCPICNMTFSSPAVAQSHYLGKTHAKSLKLKQQSTKGAALSKHLTN
PFLVASTLALQQNREMLDPDKFCSLCHSTFNDPAMAQQHYMGKRHRKQETKLKLMAHYGR
LADPAVSDLPGKGYPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTLVTLGSQTPVQTQPT
PKDSSTVQD*
MSMv4 transcript
MECPAPDATDAADPGEAGPYKGSEEPEGREPDGVRFDRERARRLWEAVSGAQPAGREEVE
HMIQKNQCLFTSTQCKVCCAMLISESQKLAHYQSKKHANKVKRYLAIHGMETIKGDVKRL
DSDQKSSRSKDKNHCCPICNMTFSSPAVAQSHYLGKTHAKSLKLKQQSTKGAALSKHLTN
PFLVASTLALQQNREMLDPDKFCSLCHSTFNDPAMAQQHYMGKRHRKQETKLKLMAHYGR
LADPAVSDLPGKGYPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTLVTLGSQTPVQTQPT
PKDSSTVQD*
homology100.00 (310 / 310)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Zfp346 (ENSMUSG00000021481)
Transcript ID ENSMUST00000159278
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GGCTCCCAACACTAGCCTCAAATACATCATGACAATCCCCATGCCTCAGC
CTCCAGAGTGATATAATTACAGGCAGGCACCACATCCAACCTTATTATTGTCTGGGTTTT
TGTTTGTTTTGTGGGTGTGTTTTGTTTCGTTGAGAGATGATCTATTATTGGAGCAGAGGT
TTGTCTTGAACTCCTGGTCGTCTTGCGTCCTCCAGAGTACTTTGACCACAGCCTTAACTA
TCTTTTTCTCGAACAATGTCTTTTTTTTCTCAAATGTGCATTTCTCTAACCTTAGTCTCC
CAAATTTTGGAATAGCAAGTATGAGCCACCGTGCTCAGCCATTAGTAAGTGCTTCTTAGA
CAGGGTCTCAGGTAGCCCAGGCTGGCCTCAAGCTCCTAATCTTATATCCTCCACCTCCTG
TGTATTGAGATGAAGAGCTGTACCATTATGTCTGCTTTAATAAGCTAAGTAAAACATTTC
TAGAATCTGGGTCTTAGGTTCTCTTCCAAAGAAATGGGAGAAATTGCCGGGCATGGTGGT
GCATGCCTTTGATCCCAGCACTCGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGCC
AGCCTGGTCTTCAGAGTGAGTGCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCG
AAAAACCAAAAAGAAAAAAGAAAAGAAATGGGAGATAATTTTCCACATATAGAAAAAGGA
AATGACAAGTGTCCGTCAGTGGCTCACCTTGAGCAAAACTGAGAGCCCTGAGCTAAGAAG
TGATCAACATGCACCGTTTTTTTCCAATTCACTGGACTCCTAAGGCGCCAGAGGAACCAA
AACAAAATGAGCCTCTGGGCCCCGCCTCCTCTGGGCCCCGCCCCCTCAGGGCCCCGCCCC
AGCGGGACTCTGCAGAGCCCAAACTTCGCGAGAGTTGCTGGCCGGGTCAAATCCCCGCCC
ACCCACTGCTCGTGGTAGCAGGCCGCATGCGCAGCTTCTTAACGGCGCGT
1 EXON 1 55,105,332 55,105,518 - 1 187
CTTGCCGGAAAGATGGAGTGTCCTGCGCCCGATGCTACGGATGCTGCGGACCCTGGAGAA
GCCGGACCGTACAAGGGCTCCGAGGAGCCGGAGGGTCGGGAACCGGACGGAGTGCGCTTT
GACCGCGAGAGGGCGCGTCGCCTGTGGGAAGCTGTGTCCGGTGCGCAGCCGGCGGGGAGG
GAGGAAG
INTRON 1 - 2 55,105,519 55,113,035 7,517
GTGAGTCGGGGGCTCCGGGGTTGGC..........TACATGATTTCTTTTCCCTCTGTAG
2 EXON 2 55,113,036 55,113,139 1 0 104
TGGAACACATGATCCAGAAGAACCAGTGTCTCTTCACCAGCACCCAGTGTAAGGTCTGCT
GTGCCATGCTGATTTCTGAGTCTCAGAAGCTGGCGCATTACCAG
INTRON 2 - 3 55,113,140 55,113,677 538
GTAGGCAATTTCTACTGTCTTCGTG..........CTGTCTTTTTGCTGGGTTCTTGCAG
3 EXON 3 55,113,678 55,113,770 0 0 93
AGCAAAAAACATGCCAACAAAGTGAAGAGATACCTAGCAATCCATGGAATGGAGACAATA
AAGGGGGACGTGAAGAGGCTAGACTCAGATCAG
INTRON 3 - 4 55,113,771 55,115,479 1,709
GTAACACAGCCGCCTTGTTGACACT..........GACCTGTGTTCTCTCTCCCAACCAG
4 EXON 4 55,115,480 55,115,624 0 1 145
AAGAGCAGCAGAAGCAAAGACAAGAACCACTGCTGCCCCATCTGTAACATGACCTTTTCC
TCCCCTGCTGTGGCACAGTCGCACTACCTGGGGAAGACCCACGCAAAGAGCCTAAAGCTG
AAGCAGCAGTCCACTAAGGGGGCAG
INTRON 4 - 5 55,115,625 55,122,281 6,657
GTACTGCGCTTCCTGAGTAGTGCTT..........TTCTGTTTGAACTCTCTTACCACAG
5 EXON 5 55,122,282 55,122,515 1 1 234
CTTTGTCGAAACACCTTACAAATCCTTTCCTTGTGGCCTCCACCTTAGCCTTGCAGCAGA
ATAGAGAGATGCTAGACCCAGACAAATTCTGCAGCCTCTGCCATTCAACATTCAACGACC
CTGCCATGGCTCAGCAACATTATATGGGCAAGAGACACAGGAAGCAGGAGACTAAGCTCA
AACTCATGGCACACTATGGGCGGCTGGCGGACCCTGCTGTCTCTGACTTACCAG
INTRON 5 - 6 55,122,516 55,130,536 8,021
GTGAGAAGGCCCCACTCATGTGCAG..........TTCATTTTGATGTGTGTTTCAGCTG
6 EXON 6 55,130,537 55,130,627 1 2 91
GGAAGGGCTACCCCTGCAAGACGTGTAAAATAGTGCTGAACTCCATAGAGCAGTACCAAG
CTCACGTCAGTGGCTTCAAACACAAAAACCA
INTRON 6 - 7 55,130,628 55,132,306 1,679
GTGAGTAAAGTCCTTCGGAAGTTCA..........CTGTGTCTGTGTTTTCAAATTACAG
7 EXON 7 55,132,307 55,132,705 2 - 399
GTCACCCAAAACATTGGTGACACTCGGGAGCCAGACGCCAGTGCAAACACAACCCACTCC
AAAGGACTCAAGCACAGTGCAAGACTAAAGCTGTCCCTGCCTGGTCAGCCTGGTGGGACA
GCCATAAGCCAGTTCCTGGTGACTGGTTAGCCGTGGCTCCTTCCTCCTCCTCTCTTATAT
CCGAAGAATGTGGAGGCATGAGGCCAACTTGGGCTGCAGATCTGCAGATAGCCTGACTGC
GCCCAGATGCAGCTCCTCCTGCCCCTCTTGAGCATGGCCCTATAGGCCATGGCAGGAGAC
AGGGCTCTGAGAAGACCTGAGGTGAAGGTTTAGAGGTTGGCCTTCCCCACCCCTCTGGGT
GTATGTCCTACAGTCCCGATGTCTGTTTTTACTCTCAAG
3' upstream sequence
GTCAGTTGGGAGCAAGGTCCTGCAGAGAAGGGAGAGCACTGTCTCTGGGCTCCAGGCAGC
TTTGTGTAGAAATGTGGAGCTAATGTGTCATTTCCTATCCCTCAAGTGTGCAGGCTTGCT
AGGTATAGATCCTGCCAACCATGAAGTCTCCCAGAAAACAGAGTCTCCGGCAGAGCACTG
CCATCTCCGCTGCCTGCTGTCTCTCCAGTTCCCTCGTGGTGCTAGGCAGCTGCAGCAGCT
CGGCGTCAGAGGAGACTTGAGTGCCCACTGGGGTCCTGATAGGCACCTAAGGGGGTGCAC
CAACCCAGGGCCATGTGAGAAAGTCTCCTACCTGCTATGTTCCTTGATTCTGTGCCCTTG
TAGGTAACTGCCTCCTGCCAGCCTACTAAAAGGTCACTTGGTGTTAGCTCTATGCCCTTG
TGTAGTGGGCGATCCTACCCAGTTGCTGTGGTGCTATCCCTCCCTTGACCTCCTCAAGAA
GATTCTGGGGGAACTAAAAAGGAATTTAGAACTGGTGCAGGTTCTACAGAGAGCAATAGG
GTCCCCAGACCCTAACCTGAGAAATTCCTTCTGGGTTTGTGTCCTGGGATCCACTGCAGT
GGGTTTATACATAACTGTGGATGGAGCAGGTCTTCCAGGAAGTATTCCTAAAGCTTGTAG
AGATAAAACAGCTTCCTTGTTAGTGTCATTGGGTACCAAGTAGAGATGGGGCAGGGCTTA
AACTCTTGTTCTTTGGTCACTCAACCAAGAAAAAAAATTTCTTCTGTGAGTCATGCTGTA
ACCCCAGGGCTGAGGTTGATACTGCTATGACATCCCCACACAGTTGGCCCCCAGTGTCCT
TAATAACAATCTTACCCAGGAAAGGTCTCCCTGCTGCCCTAAGCCCAACCCAGTTCATCC
CCCAGCTAAGGGATTGATTCTTGAGATAGTCACTCTGGCTACTGAGTGGGGGACTGCGAA
GAGGCCAGTGTGAAAACTGTGTCCATACTGCTGCTGGTCT..........

Sequence Detail Report

Gene Symbol (Gene ID) Zfp346 (ENSMUSG00000021481)
Transcript ID ENSMUST00000159278
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 310 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information