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Target CDS Information

Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Cross Reference
EMBL AF459099, AF459100, AK015087, ...show all
Fantom 3830432A14, 4930404M18
GO GO:0003725, GO:0005730, GO:0005783, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name Stau2-016
OTTP OTTMUSP00000047067
OTTT OTTMUST00000086844
PDB 1UHZ
protein_id AAH10300.1, AAH25118.1, AAN37928.1, ...show all
RefSeq_peptide_predicted XP_011236693.1
UCSC uc007ajq.2
UniParc UPI0000027D13
Uniprot/SWISSPROT Q8CJ67
Vega_transcript OTTMUST00000086844, Stau2-016
Vega_translation 178764, OTTMUSP00000047067
Definition protein_id:ENSMUSP00000125726
translation:
MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG
SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTV
GNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLV
FEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL
KKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSER
GMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENK
GWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFF
SVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQV

Chromosome 1
Length
Position(start - end)
163,660
16,345,698 - 16,509,359
Orient to Chromosome minus
Link Location : (1:16345698-16509359)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000159558
Reports
substitution
cSNPs2
Insertion86
Deletion100
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num2
non-synonymous num0
synonymous substitutions 16440376 (p.Lys87Lys), 16463087 (p.Thr42Thr),
non-synonymous substitutions
B6 transcript
(ENSMUST00000159558)
MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG
SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTV
GNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLV
FEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL
KKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSER
GMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENK
GWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFF
SVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQV*
MSMv4 transcript
MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG
SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTV
GNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLV
FEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL
KKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSER
GMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENK
GWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFF
SVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQV*
homology100.00 (480 / 480)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000159558
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTATTCATTTTTTCCTGATGAATGATGTGGGCCGTAGAGCAGGTGATGGG
GGCTCGCTTGCGCTGCTTGCTACCCTCCTCCCCCTTCTTCCTCCTCCAGTCTAGAAAGGT
GCAGGATCCGCCGAATCCTACGTCGCACCGCAGTGGAACGGACGCGGGATGGTCGCGCGT
CCCCAGCTAGGCAGAGGCGGGCAGTCAGCGAGCCGGGAAAGGTAGGAGCAGAGCGTCGGG
GACAGGCTGCTAGAGAGCCCAGGGGCAGCGGGTGCGGGAGAGGCTGAGCCGCCGGTGCTG
GAGCACCTTCGCAGTTGCGGGCCGGGCGCCCTCAGCGTGCTCCTGCAGCAGCTCCCGGGA
CGGGCCCCGGCGCGGCCCGAGACCCCAGGCCTAAGCCCCGCAGCGCCCCGGGATGCGGGG
GTCCCAGAAGCCGCCAGGGGGCGGGAACGGCGCGGCGAACAATGGCCGCTCGACCGCGAA
GGGAGGCGGGGAGAGGTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGACAGAGAGACAGAGAGAGACACAGAGACACAGAGACACAGAGACACAGAGAGA
GAGACAGAGACACAGAGAGAGAGACAGACAGACAGAGAGACACAGAGAGAGGAGAGAGAG
AGACAGAGAAAGAGAGGGGGGAGAGACACAGAGAGAGAGAGACAGACAGAGAGAGGAGAG
AGACAGAGAAAGAAAGGGGAGAGAGACAGAGAGACAGAGCGAGCTGGAGAGAGAGAGCGC
GAGAGAGAGCTGGCGCGGGGGCGCGCGGCGTGGCGCGGGCGCGGCGGCGCAGGCGGGGGC
GCGCGGCGCGGGCCCGGGAGGGCGCGGCGGGAGCGCAGGGCGGCAGGCGGAGGCGGGGGG
CGGGAGCCGAGGAGGGAGCAGGCGGCGTCGGCGGAGCTCTGGAGCGCTCG
1 EXON 1 16,519,173 16,519,211 - - 39
CCCATGTGGAGCCGTCTGCCGGGCGTCCGTGGCCCGCAG
INTRON 1 - 2 16,512,012 16,519,172 7,161
GTAAATCCTGGTGCGAGCGGCGCCG..........CATCTCATCGTTTCCTATTTGTTAG
2 EXON 2 16,511,930 16,512,011 - - 82
ATGCTGCCTACCAGTTTACTTTTTAAAGGTTAAAGGAGGGGAGAGGGCTCGAAGGTACAA
TAATTTGTCAAAGGCTCAAATG
INTRON 2 - 3 16,509,409 16,511,929 2,521
GTTATCTGACTGAAACTAAAAATCA..........TTATTTCTTTGTTTTCATTTTCCAG
3 EXON 3 16,509,342 16,509,408 - 0 67
TTTTGTGGAGCTGTGAGGGATACGGAAGTTTGATCAATATTGTCTTAACATGCTTCAGAT
AAATCAG
INTRON 3 - 4 16,463,195 16,509,341 46,147
GTGAGTATGATTAAGGCGTGTCTTA..........GTTTTCTCTATCTGGTCTTTCCAAG
4 EXON 4 16,463,035 16,463,194 0 1 160
ATGTTTTCGGTGCAGCTGAGTCTTGGCGAGCAGACATGGGAATCCGAAGGGAGCAGTATA
AAGAAGGCCCAACAAGCTGTTGCTAACAAAGCTTTGACTGAATCTACCCTTCCCAAACCA
GTTCAGAAACCACCTAAAAGTAATGTCAATAATAACCCAG
INTRON 4 - 5 16,440,459 16,463,034 22,576
GTATGGCATTGGTTTGTTTCCTTCC..........GTGTATCTCTAATGTTTTTAAACAG
5 EXON 5 16,440,323 16,440,458 1 2 136
GTAGTATAACTCCAACTGTGGAACTGAATGGGCTCGCTATGAAAAGGGGAGAGCCTGCCA
TCTACAGGCCACTAGATCCAAAACCATTCCCAAATTATAGAGCTAACTACAACTTCCGGG
GCATGTACAATCAGAG
INTRON 5 - 6 16,394,211 16,440,322 46,112
GTTTGTATGTCTTCTTTGGTTTTGT..........TAATGCTTGTGCTCTCTTTCTATAG
6 EXON 6 16,394,051 16,394,210 2 0 160
GTATCATTGCCCAATGCCCAAGATCTTTTATGTTCAGTTAACTGTAGGAAATAATGAATT
CTTTGGTGAAGGGAAGACTCGACAAGCTGCCAGACACAATGCTGCGATGAAAGCGCTTCA
AGCCCTACAGAATGAGCCAATTCCAGAAAAGTCTCCCCAG
INTRON 6 - 7 16,392,625 16,394,050 1,426
GTGTGGCCCTGATGAGTGCGGCATT..........TTTTTTGCTTTTTGTTTTTACTTAG
7 EXON 7 16,392,517 16,392,624 0 0 108
AATGGTGAATCAGGAAAAGAAATGGATGACGATAAAGATGCAAATAAATCTGAAATAAGC
TTAGTGTTTGAGATTGCGCTGAAGAGAAATATGCCTGTCAGTTTTGAG
INTRON 7 - 8 16,390,034 16,392,516 2,483
GTATGTGTTCCTGTGCTTCTCTTTG..........TTAATATTTTGCTTGCATTTAATAG
8 EXON 8 16,389,821 16,390,033 0 0 213
GTTATTAAAGAAAGTGGACCACCACATATGAAGAGTTTTGTAACTCGGGTGTCAGTGGGA
GAATTTTCTGCAGAAGGAGAGGGAAATAGCAAAAAACTCTCCAAGAAGCGTGCCGCAACC
ACTGTCTTACAGGAGCTTAAAAAACTCCCACCTCTTCCTGTGGTAGAGAAGCCAAAACTA
TTTTTTAAAAAACGCCCTAAAACAATAGTAAAG
INTRON 8 - 9 16,374,812 16,389,820 15,009
GTAAGCATATACTTGTGACTATCCA..........TTCTGACGCTTTTCTTATGTTTTAG
9 EXON 9 16,374,674 16,374,811 0 0 138
GCTGGACCCGACTATGGTCAAGGAATGAACCCCATTAGCCGCCTGGCTCAGATCCAGCAA
GCCAGAAAGGAAAAGGAGCCTGATTACATCCTACTCTCAGAACGAGGAATGCCTCGCCGT
CGAGAGTTCGTAATGCAG
INTRON 9 - 10 16,369,887 16,374,673 4,787
GTATTCTTAATCTTCGTACTAAATG..........TCATGAATTTCTTTAACCTCAATAG
10 EXON 10 16,369,755 16,369,886 0 0 132
GTCAAGGTAGGCAATGAAGTTGCGACTGGAACAGGACCCAATAAAAAGATAGCCAAAAAA
AATGCTGCTGAAGCAATGCTGTTACAGCTTGGCTATAAAGCGTCCACCAGTCTTCAGGAT
CCGCTCGACAAG
INTRON 10 - 11 16,366,140 16,369,754 3,615
GTAAGTGTGGGCCTTAGTGGACATG..........TGTAATAATTGATTTAACCTTTCAG
11 EXON 11 16,366,079 16,366,139 0 1 61
ACAGGTGAAAACAAAGGATGGAGTGGTCCAAAGCCTGGGTTTCCTGAACCAACAAATAAC
A
INTRON 11 - 12 16,346,012 16,366,078 20,067
GTAAGTTACTATTTTGTGTGTGTGT..........CAGTGTACCTTTATTTTATTCATAG
12 EXON 12 16,343,407 16,346,011 1 - 2,605
CTCCAAAAGGAATTCTTCATCTTTCTCCTGATGTTTATCAAGAGATGGAAGCTAGCCGCC
ACAGAGTGACCTCTGGCACAACTCTAAGCTACTTATCTCCCAAAGATATGAACCAACCTT
CAAGCTCTTTCTTCAGTGTGTCTCCCTCATCAACTAGTTCAGCCACAGTTGCCAGGGAAC
TCCTTATGAATGGAACATCTCCTACTGCTGAAGCCATAGGTTTAAAAGGAAGTTCTCCTA
CTTCCCCTTGTTCTTCAGTACAGCCTTCAAAACAACTGGAATATTTAGCAAGGATTCAAG
GCTTTCAGGTATGATTTTAAAGAAAAAAACAAAAAGAGAAAATAAAACTCATTAGCCCCA
AATCCTTCATTTCTGTCCACCAGAAGGCTCATTCTTGCCTGCTAATGTGGCCTCCATGCC
ATTAACATTGTAAGTTATTTAGAAACACAAAAGACAGAAAAAAAGAGATTCATAGCACAT
GTCTTATTTTCTGTCACTACTGTCCAGGAACTCTGTTGCTGCCTGGCTTTCTGCCATATT
GATATTCACATCTGTACTCTCTGTCTCTCTCTTTCTCCCTCCCTCTCCCTCTCTTTCTTC
CCCTCCCTCTTCCTTTCCAATCCTGTCTACCTTCCTTTCTTCCCCTCCCTTCTCCCTCAT
GTCTCCATCCTTGCCTTCCTCCTGGGTCCTGTCTTTCAGTTGGTCTTGATTGGCACATCC
ATCTTCTCATTTTGTTTTGCACAACCAAGATTCTCCCAGGAGACATTTGGTGTTAGTGTT
TACATCACTTCCCCTTTTTACAGTCACGGTTGAGTCTTTCTGCTGTTGATTTGATTTTAT
AGCAGTTTTGAATTTCCCATCCTGCAGTTAGTAATGACACAGGTACATTTATAAGGTCCA
GCACCCTTGAAGTCTGTTACCTTAGGGGGCATTAAACATGGCACTGAGCAGTAGTGGAAC
ACTTTGTGGATGTTGGAGGTATAATGAGTATCTGTTGTACTGGATCGTGTGCTGGGCCAG
GGTGGAGAAGCATCTACCGCCACTGATACAGCAGCTGTCTCATGATGATCTCAGAGCAGC
ACACAGCTGTCATGAGTGTAGATTTGGGAATGGAGCTTCTTTCCCACTTATTCTTGTTCC
CTTTGGGGGGAAATACCCCATGAAACCAACAGGAGAGATTTTAAAGGAATTGTTAATTGT
GGGAAGGGAAGTTTATGTGTGCCGACTCCTAGTTGCCTTGAAAGCCAAGTACTGAAGCAT
AACTGTCAACCGACGGGATGAAACTGCAGCTTGCGTGTGCACAGGACACTCTGGCTCCCC
ACATTTCACTGCTTCACCTTCCATCTTAGTCTTCCTTCTTAAGACCAAACTCTGTAATTT
CTTGTAGAAATGTTCTAGATCTGTATTATGTAGAAGATATCATGTATTATAAATGTTTCA
TGGCATCAGTTATACAATGAGAAAGAAGATGATGTGTTGGGAGTATTTTGCATGTTTGGT
TTGGTTTTTCTACTTCACAGATCCCTTCTGATTCTTTCAATTCTATTGCCAGGTAGTCGC
TAGTGTTTCTAATCACACGATTGATTTAATTAATACGATGCTGAAGAAGCTGTACTAATT
ATTGACTCTGTCATCGGAAATTTAAATGATTAATTTCAAGTTATAATTTCAGAATTTGTT
ATTTACCTTAAGAATTACAATAAATCACTGTTTAAACAAAAGACTTTGATTCATATAGTG
AAAGCACTAGACTAATACTTAGTTCTACCAATAATCTGCATAGTATAAATTAAAATAAAC
TGTGATGAAAAGTGACCCACTGCTCATTTATAAATGTCTGCAAGTGATGGCTCGGCTCTG
TGCACGCAGTACATGTTGCACTCTGGCTTTTGGCTGAGTTTTGAAGTTTCTGAGTTCCTT
ATGCATTAGTCCTCGGCCATGACAGCAGCTATAATCTTATCCTATCTTCACTTTAACCGA
ATTAGAGTCTACTACCCCTATTGCTGGGCTCGCTGCTTACACCTATCTCAAAAGCTTGCT
CTGTGGTAATATTCTCTTCCTCATGGACAAGGTAAACATCTCCAGATCTGTGACAGTGGT
GGTTACACATTGCTGTGCTGTGTCACTGGAGTGAGCGGGTGCTGCTCGTGGACCACAGCC
TGCAGCCGCAAGGCAGTCTCTGGAGAGTGGCCTCTGGTCTGCGATGAGTGCACACATCAT
CATGTCACCCTAGATGGTTCTTGTGATAAGAGTTTTAAAGTGTATTTCTTTCTTGGTAAT
TTTCTCAGGTAGGAAAATATACGGATTTTTTTTTTGTTTGTTTCTTACATGATTTAATTA
GACTGTAGCTAGAAAGTGGAAGACCAGCTTGTTAGAAATTATATGCTCTTCTGTTACTTT
TATTTCTGGAATTTGAAAACAATAAATTCATTTTCTTTGTAGGTCAGTAGCTTTTCATCT
CATTCCACATTGAACAGTTGTCATTCCTACTGAATGTGTAGGCTCTGCTTAGGCCTTCCA
TTGCCCACTGTGGTATGATTTAAGCCTAACTAAGCTACTGCGCTCTCTTGTAGTGCCAAA
TTAAGTCAGATGAGTCTGTGGAAAA
3' upstream sequence
AGAAGTTGCTGTAACTTAATTTTATTTTCATTTCCCAGTCTTTAATTGAAATTTACAAAT
GACAAAAAGGTAATTTGCTCAGGCACATGTAGGTATTAAGTTCACTTTCTTCTGTATAAA
CCTACAAAATAAAATTATTACACAGTGAGTTCTCTTAACAAAACTGATTTCATAAATCAG
AGTGTGACTGACACCCACTCCTAATCATCCTTTCATTCTCAGGAATTCCCATTGAAGGTT
TTTACAAAGAGTGTATGTGTGTGTATGTATATGTGTATGTGTGTGAGAGTGTATGTGTGT
ATGTATATGTGTATGTGTGTGAGAGTGTATGTGTGTGTATGTATATGTGTATGTGTGTGA
GAGTGTATGTGTGTGTATGTATATGTGTATGTGTGTGAGAGTGTATGTGTGTGTATGTAT
ATGTGTATGTGTGTGAGAGTGTATGTGTGTGTATGTATATGTGTATGTGTGTGAGAGTGT
ATGTGTGTATGTATATGTGTATGAGTGTATGTGTGTGAGAGTGTATGTGTGTGTATGTAT
ATCTGTATGTGTGTGAGTGTATGTGTGTATGTATATGTGTATGAGTGTATGTGTGTGAGA
GTGTATGTGTGTGTATGTATGTCTGTATGTGTGTGAGAGTGTATGTGTGTATGTATATGT
GTATGAGTGTATGTGTGTGAGAGTGTATGTGTGTGTATGTATGTCTGTATGTGTGTGAGA
GTGTATGTGTGTATGTATATGTGTATTGTGTGAGAGTGAATGTGTGTATATGTGTATGTG
TGTGAGAGAGAGAGCATATGTATGTGTGTGTGAGTGTGTGTGCGTGCGCGTGTTTGTGCA
GATGCTCTTGGAGGCCAAAGGCATCAGATCCTCTGGAACTGGATCACAGGTGTGTACTGT
TTCTTTTAGAAACAATGTCTTTCAAACTCTTTCATAAATGAATATTTTTTCTCTTAAGTT
CTCTTGAGTGCATTTTAATTATCTTTTAAAACCTGGAAAT..........

Sequence Detail Report

Gene Symbol (Gene ID) Stau2 (ENSMUSG00000025920)
Transcript ID ENSMUST00000159558
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 480 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information