MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Zfp346 (ENSMUSG00000021481)

Cross Reference

EMBL	AC123709, AC154610
GO	GO:0003725, GO:0005515, GO:0005634, ...show all
goslim_goa	GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name	Zfp346-007
OTTP	OTTMUSP00000048658
OTTT	OTTMUST00000089122
UCSC	uc007qpy.1
UniParc	UPI0001DD3533
Uniprot/SPTREMBL	E0CY94
Vega_transcript	OTTMUST00000089122, Zfp346-007

Vega_translation

214558, OTTMUSP00000048658

Definition

protein_id:ENSMUSP00000124397
translation:

MECPAPDATDAADPGEAGPYKGSEEPEGREPDGVRFDRERARRLWEAVSGAQPAGREEVE
HMIQKNQCLFTSTQCKVCCAMLISESQKLAHYQSKKHANKVKRYLAIHGMETIKGDVKRL
DSDQVTQNIGDTREPDASANTTHSKGLKHSA

Chromosome

Length
Position(start - end)

27,042
55,105,344 - 55,132,387

Orient to Chromosome

plus

Link

Location : (13:55105344-55132387)
/

Detail Map

name	Zfp346 (ENSMUSG00000021481)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Zfp346 note : zinc finger protein 346 [Source:MGI Symbol;Acc:MGI:1349417]

name	Gm17617 (ENSMUSG00000091768)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm17617 note : predicted gene, 17617 [Source:MGI Symbol;Acc:MGI:4937251]

name	Zfp346 (ENSMUSG00000021481)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000161018

name	Zfp346 (ENSMUSG00000021481)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000161315

name	Zfp346 (ENSMUSG00000021481)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000021937

name	Zfp346 (ENSMUSG00000021481)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000159278

name	Zfp346 (ENSMUSG00000021481)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000161551

name	Zfp346 (ENSMUSG00000021481)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000159147

name	Zfp346 (ENSMUSG00000021481)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000162476

name	Zfp346 (ENSMUSG00000021481)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000160660

name	Zfp346 (ENSMUSG00000021481)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000162428

name	Zfp346 (ENSMUSG00000021481)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000161077

name	Gm17617 (ENSMUSG00000091768)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000164344

name	Zfp346 (ENSMUSG00000021481) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000089121 Vega_transcript:Zfp346-006 Uniprot/SPTREMBL:E0CXP1 EMBL:AC123709 EMBL:AC154610 GO:GO:0003725 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0008270 GO:GO:0019899 GO:GO:0043065 GO:GO:0044822 MGI_trans_name:Zfp346-006 Vega_translation:214557 Vega_translation:OTTMUSP00000048657 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005730 goslim_goa:GO:0008150 goslim_goa:GO:0019899 goslim_goa:GO:0043167 goslim_goa:GO:0043226 OTTP:OTTMUSP00000048657 OTTT:OTTMUST00000089121 UniParc:UPI0001DD3532
definition	note : transcript_id=ENSMUST00000161018 protein_id : ENSMUSP00000125154 translation : MECPAPDATDAADPGEAGPYKGSEEPEGREPDGVRFDRERARRLWEAVSGAQPAGREEVEHMIQKNQCLFTSTQCKVCCAMLISESQKLAHYQSKKHANKVKRYLAIHGMETIKGDVKRLDSDQLCRNTLQILSLWPPP

name	Zfp346 (ENSMUSG00000021481) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000089122 Vega_transcript:Zfp346-007 Uniprot/SPTREMBL:E0CY94 UCSC:uc007qpy.1 EMBL:AC123709 EMBL:AC154610 GO:GO:0003725 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0008270 GO:GO:0019899 GO:GO:0043065 GO:GO:0044822 MGI_trans_name:Zfp346-007 Vega_translation:214558 Vega_translation:OTTMUSP00000048658 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005730 goslim_goa:GO:0008150 goslim_goa:GO:0019899 goslim_goa:GO:0043167 goslim_goa:GO:0043226 OTTP:OTTMUSP00000048658 OTTT:OTTMUST00000089122 UniParc:UPI0001DD3533
definition	note : transcript_id=ENSMUST00000161315 protein_id : ENSMUSP00000124397 translation : MECPAPDATDAADPGEAGPYKGSEEPEGREPDGVRFDRERARRLWEAVSGAQPAGREEVEHMIQKNQCLFTSTQCKVCCAMLISESQKLAHYQSKKHANKVKRYLAIHGMETIKGDVKRLDSDQVTQNIGDTREPDASANTTHSKGLKHSA

name	Zfp346 (ENSMUSG00000021481) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26539.1 Uniprot/SWISSPROT:Q9R0B7 RefSeq_peptide:NP_036147 RefSeq_mRNA:NM_012017.2 Vega_transcript:OTTMUST00000089114 Vega_transcript:Zfp346-001 UCSC:uc007qpy.1 EMBL:AF083339 EMBL:BC055075 GO:GO:0003725 GO:GO:0003725 GO:GO:0005515 GO:GO:0005515 GO:GO:0005634 GO:GO:0005634 GO:GO:0005654 GO:GO:0005654 GO:GO:0005730 GO:GO:0005730 GO:GO:0005737 GO:GO:0008270 GO:GO:0019899 GO:GO:0019899 GO:GO:0043065 GO:GO:0044822 GO:GO:0044822 MGI_trans_name:Zfp346-001 Vega_translation:214559 Vega_translation:OTTMUSP00000048651 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005730 goslim_goa:GO:0005737 goslim_goa:GO:0008150 goslim_goa:GO:0019899 goslim_goa:GO:0043167 goslim_goa:GO:0043226 protein_id:AAD52017.1 protein_id:AAH55075.1 OTTP:OTTMUSP00000048651 OTTT:OTTMUST00000089114 UniParc:UPI0000021C0C
definition	note : transcript_id=ENSMUST00000021937 protein_id : ENSMUSP00000021937 translation : MECPAPDATDAADPGEAGPYKGSEEPEGREPDGVRFDRERARRLWEAVSGAQPAGREEVEHMIQKNQCLFTSTQCKVCCAMLISESQKLAHYQSKKHANKVKRYLAIHGMETIKGDVKRLDSDQKSSRSKDKNHCCPICNMTFSSPAVAQSHYLGKTHAKSLKLKQQSTKGAALQQNREMLDPDKFCSLCHSTFNDPAMAQQHYMGKRHRKQETKLKLMAHYGRLADPAVSDLPAGKGYPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTLVTLGSQTPVQTQPTPKDSSTVQD

name	Zfp346 (ENSMUSG00000021481) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide_predicted:XP_006517322.1 Vega_transcript:OTTMUST00000089119 Vega_transcript:Zfp346-004 Uniprot/SPTREMBL:E9Q7N8 UCSC:uc007qpy.1 EMBL:AC123709 EMBL:AC154610 GO:GO:0003725 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0008270 GO:GO:0019899 GO:GO:0043065 GO:GO:0044822 MGI_trans_name:Zfp346-004 Vega_translation:214560 Vega_translation:OTTMUSP00000048656 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005730 goslim_goa:GO:0008150 goslim_goa:GO:0019899 goslim_goa:GO:0043167 goslim_goa:GO:0043226 OTTP:OTTMUSP00000048656 OTTT:OTTMUST00000089119 UniParc:UPI0001DD3534
definition	note : transcript_id=ENSMUST00000159278 protein_id : ENSMUSP00000125078 translation : MECPAPDATDAADPGEAGPYKGSEEPEGREPDGVRFDRERARRLWEAVSGAQPAGREEVEHMIQKNQCLFTSTQCKVCCAMLISESQKLAHYQSKKHANKVKRYLAIHGMETIKGDVKRLDSDQKSSRSKDKNHCCPICNMTFSSPAVAQSHYLGKTHAKSLKLKQQSTKGAALSKHLTNPFLVASTLALQQNREMLDPDKFCSLCHSTFNDPAMAQQHYMGKRHRKQETKLKLMAHYGRLADPAVSDLPGKGYPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTLVTLGSQTPVQTQPTPKDSSTVQD

name	Zfp346 (ENSMUSG00000021481) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000089128 Vega_transcript:Zfp346-013 Uniprot/SPTREMBL:E0CYH6 EMBL:AC123709 EMBL:AC154610 GO:GO:0003725 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0019899 GO:GO:0043065 GO:GO:0044822 MGI_trans_name:Zfp346-013 Vega_translation:214561 Vega_translation:OTTMUSP00000048662 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005730 goslim_goa:GO:0008150 goslim_goa:GO:0019899 goslim_goa:GO:0043226 OTTP:OTTMUSP00000048662 OTTT:OTTMUST00000089128 UniParc:UPI0001DD3536
definition	note : transcript_id=ENSMUST00000161551 protein_id : ENSMUSP00000124180 translation : MECPAPDATDAADPGEAGPYKGSEEPEGREPDGVRFDRERARRLWEAVSGAQPAGREEVEHMIQKNQCLFTSTQCKVCCAMLISESQKLAHYQPCSRIERC

name	Zfp346 (ENSMUSG00000021481) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000089117 Vega_transcript:Zfp346-002 Uniprot/SPTREMBL:E9PYN2 UCSC:uc007qpy.1 EMBL:AC123709 EMBL:AC154610 GO:GO:0003725 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0008270 GO:GO:0019899 GO:GO:0043065 GO:GO:0044822 MGI_trans_name:Zfp346-002 Vega_translation:214562 Vega_translation:OTTMUSP00000048654 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005730 goslim_goa:GO:0008150 goslim_goa:GO:0019899 goslim_goa:GO:0043167 goslim_goa:GO:0043226 OTTP:OTTMUSP00000048654 OTTT:OTTMUST00000089117 UniParc:UPI0001DD3535
definition	note : transcript_id=ENSMUST00000159147 protein_id : ENSMUSP00000124107 translation : MECPAPDATDAADPGEAGPYKGSEEPEGREPDGVRFDRERARRLWEAVSGAQPAGREEVEHMIQKNQCLFTSTQCKVCCAMLISESQKLAHYQSSRSKDKNHCCPICNMTFSSPAVAQSHYLGKTHAKSLKLKQQSTKGAALQQNREMLDPDKFCSLCHSTFNDPAMAQQHYMGKRHRKQETKLKLMAHYGRLADPAVSDLPAGKGYPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTLVTLGSQTPVQTQPTPKDSSTVQD

name	Zfp346 (ENSMUSG00000021481) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000089118 Vega_transcript:Zfp346-003 Uniprot/SPTREMBL:E0CZ32 UCSC:uc007qpy.1 EMBL:AC123709 EMBL:AC154610 EMBL:CH466546 GO:GO:0003725 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0008270 GO:GO:0019899 GO:GO:0043065 GO:GO:0044822 MGI_trans_name:Zfp346-003 Vega_translation:214563 Vega_translation:OTTMUSP00000048655 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005730 goslim_goa:GO:0008150 goslim_goa:GO:0019899 goslim_goa:GO:0043167 goslim_goa:GO:0043226 protein_id:EDL41173.1 OTTP:OTTMUSP00000048655 OTTT:OTTMUST00000089118 UniParc:UPI000154A554
definition	note : transcript_id=ENSMUST00000162476 protein_id : ENSMUSP00000125743 translation : MECPAPDATDAADPGEAGPYKGSEEPEGREPDGVRFDRERARRLWEAVSGAQPAGREEVEHMIQKNQCLFTSTQCKVCCAMLISESQKLAHYQSKKHANKVKRYLAIHGMETIKGDVKRLDSDQPCSRIERC

name	Zfp346 (ENSMUSG00000021481) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000089123 Vega_transcript:Zfp346-008 Uniprot/SPTREMBL:E0CYN4 UCSC:uc007qpy.1 EMBL:AC123709 EMBL:AC154610 EMBL:CH466546 GO:GO:0003725 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0008270 GO:GO:0019899 GO:GO:0043065 GO:GO:0044822 MGI_trans_name:Zfp346-008 Vega_translation:214564 Vega_translation:OTTMUSP00000048659 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005730 goslim_goa:GO:0008150 goslim_goa:GO:0019899 goslim_goa:GO:0043167 goslim_goa:GO:0043226 protein_id:EDL41172.1 OTTP:OTTMUSP00000048659 OTTT:OTTMUST00000089123 UniParc:UPI000154A553
definition	note : transcript_id=ENSMUST00000160660 protein_id : ENSMUSP00000124034 translation : MECPAPDATDAADPGEAGPYKGSEEPEGREPDGVRFDRERARRLWEAVSGAQPAGREEVEHMIQKNQCLFTSTQCKVCCAMLISESQKLAHYQSKKHANKVKRYLAIHGMETIKGDVKRLDSDQLGRATPARRVK

name	Zfp346 (ENSMUSG00000021481) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000089127 Vega_transcript:Zfp346-012 Uniprot/SPTREMBL:E0CZ32 UCSC:uc007qpy.1 EMBL:AC123709 EMBL:AC154610 EMBL:CH466546 GO:GO:0003725 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0008270 GO:GO:0019899 GO:GO:0043065 GO:GO:0044822 MGI_trans_name:Zfp346-012 Vega_translation:214565 Vega_translation:OTTMUSP00000048661 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005730 goslim_goa:GO:0008150 goslim_goa:GO:0019899 goslim_goa:GO:0043167 goslim_goa:GO:0043226 protein_id:EDL41173.1 OTTP:OTTMUSP00000048661 OTTT:OTTMUST00000089127 UniParc:UPI000154A554
definition	note : transcript_id=ENSMUST00000162428 protein_id : ENSMUSP00000125389 translation : MECPAPDATDAADPGEAGPYKGSEEPEGREPDGVRFDRERARRLWEAVSGAQPAGREEVEHMIQKNQCLFTSTQCKVCCAMLISESQKLAHYQSKKHANKVKRYLAIHGMETIKGDVKRLDSDQPCSRIERC

name	Zfp346 (ENSMUSG00000021481) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000089124 Vega_transcript:Zfp346-009 Uniprot/SPTREMBL:F7CTY2 UCSC:uc007qpy.1 GO:GO:0003725 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005730 GO:GO:0008270 GO:GO:0019899 GO:GO:0043065 GO:GO:0044822 MGI_trans_name:Zfp346-009 Vega_translation:214566 Vega_translation:OTTMUSP00000048660 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005730 goslim_goa:GO:0008150 goslim_goa:GO:0019899 goslim_goa:GO:0043167 goslim_goa:GO:0043226 OTTP:OTTMUSP00000048660 OTTT:OTTMUST00000089124 UniParc:UPI0001DD3537
definition	codon_start : 3 note : transcript_id=ENSMUST00000161077 protein_id : ENSMUSP00000125204 translation : XYKGSEEPEGREPDGVRFDRERARRLWEAVSGAQPAGREEVEHMIQKNQCLFTSTQCKVCCAMLISESQKLAHYQSKKHANKVKRYLAIHGMETIKGDVKRLDSDQKSSRSKDKNHCCPICNMTFSSPAVAQSHYLGKTHAKSLKLKQQSTKGAALSKHLTNPFLVASTLALQQNREMLDPDKFCSLCHSTFNDPAMAQQHYMGKRHRKQETKLKLMAHYGRLADPAVSDLPGHPKHW

name	Gm17617 (ENSMUSG00000091768) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SPTREMBL:F6TMR5 MGI_trans_name:Gm17617-201 UniParc:UPI0001F78F1A
definition	note : transcript_id=ENSMUST00000164344 protein_id : ENSMUSP00000127490 translation : LRTLGAKTPVGTQ

name
type	misc_feature
link
xref
definition	note : contig AC154610.3 1..163811(-1)

name
type	misc_feature
link
xref
definition	note : contig AC123709.9 27600..99670(1)

name	Zfp346 (ENSMUSG00000021481)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000089120 Vega_transcript:OTTMUST00000089120 MGI_trans_name:Zfp346-005 OTTT:OTTMUST00000089120
definition	note : retained_intron note : transcript_id=ENSMUST00000162288

name	Zfp346 (ENSMUSG00000021481)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000089125 Vega_transcript:OTTMUST00000089125 MGI_trans_name:Zfp346-010 OTTT:OTTMUST00000089125
definition	note : retained_intron note : transcript_id=ENSMUST00000160310

name	Zfp346 (ENSMUSG00000021481)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000089126 Vega_transcript:OTTMUST00000089126 MGI_trans_name:Zfp346-011 OTTT:OTTMUST00000089126
definition	note : retained_intron note : transcript_id=ENSMUST00000162653

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Zfp346 (ENSMUSG00000021481)
Transcript ID	ENSMUST00000161315

Reports
substitution
cSNPs	0
Insertion	30
Deletion	21
SNPs	-1kb 55100363(c.-4981T>C), 55100381(c.-4963G>C), 55100468(c.-4876G>A), 55100489(c.-4855A>C), 55100544(c.-4800A>G), 55100675(c.-4669T>G), 55100676(c.-4668T>A), 55100979(c.-4365G>A), 55100998(c.-4346A>G), 55101640(c.-3704A>G), 55101731(c.-3613T>C), 55101733(c.-3611C>T), 55101803(c.-3541C>T), 55101866(c.-3478G>A), 55101934(c.-3410A>G), 55101936(c.-3408T>C), 55101993(c.-3351G>T), 55102008(c.-3336G>A), 55102494(c.-2850A>G), 55102629(c.-2715G>T), 55102961(c.-2383T>C), 55102963(c.-2381C>A), 55103401(c.-1943A>G), 55103626(c.-1718T>C), 55104001(c.-1343A>G), 55104295(c.-1049C>A), 55104370(c.-974T>C), 55104372(c.-972C>A), 55104943(c.-401T>G), 55105113(c.-231A>C), 5'UTR CDS 3'UTR INTRON 55105714(c.175+196C>A), 55106166(c.175+648G>A), 55106378(c.175+860G>A), 55106611(c.175+1093A>C), 55106778(c.175+1260T>C), 55106812(c.175+1294C>T), 55107018(c.175+1500A>G), 55107640(c.175+2122C>T), 55107860(c.175+2342A>G), 55107881(c.175+2363T>C), 55108139(c.175+2621A>G), 55108785(c.175+3267T>C), 55108851(c.175+3333T>G), 55109083(c.175+3565G>T), 55109220(c.175+3702G>T), 55109353(c.176-3683C>A), 55109522(c.176-3514C>T), 55109825(c.176-3211A>T), 55111032(c.176-2004G>A), 55111065(c.176-1971G>A), 55111472(c.176-1564A>G), 55111560(c.176-1476G>A), 55111760(c.176-1276A>G), 55111940(c.176-1096C>T), 55112046(c.176-990T>C), 55113206(c.279+67G>A), 55113409(c.280-269C>T), 55113420(c.280-258G>T), 55113467(c.280-211C>A), 55113492(c.280-186T>C), 55114155(c.372+385T>C), 55114215(c.372+445G>A), 55114275(c.372+505A>G), 55114408(c.372+638A>G), 55114496(c.372+726A>G), 55114504(c.372+734G>A), 55114734(c.372+964A>G), 55115241(c.372+1471C>T), 55115373(c.372+1603G>A), 55115379(c.372+1609G>A), 55115666(c.372+1896T>C), 55116401(c.372+2631C>T), 55116437(c.372+2667C>T), 55116461(c.372+2691T>C), 55116747(c.372+2977G>T), 55117235(c.372+3465A>G), 55117242(c.372+3472C>T), 55118119(c.372+4349T>G), 55118140(c.372+4370T>C), 55118233(c.372+4463A>G), 55118425(c.372+4655A>C), 55118478(c.372+4708A>G), 55118496(c.372+4726T>C), 55118549(c.372+4779G>A), 55118958(c.372+5188A>G), 55118965(c.372+5195A>G), 55118978(c.372+5208T>A), 55119194(c.372+5424A>G), 55119829(c.372+6059C>T), 55119847(c.372+6077A>G), 55120061(c.372+6291G>T), 55121939(c.372+8169T>C), 55122156(c.372+8386T>C), 55122956(c.372+9186C>T), 55123207(c.373-9100A>G), 55123614(c.373-8693A>G), 55123758(c.373-8549C>T), 55123760(c.373-8547A>G), 55123775(c.373-8532C>T), 55124003(c.373-8304A>G), 55124318(c.373-7989C>T), 55124655(c.373-7652T>C), 55125223(c.373-7084T>C), 55125425(c.373-6882G>T), 55126365(c.373-5942A>C), 55126521(c.373-5786G>A), 55126615(c.373-5692T>C), 55126847(c.373-5460G>A), 55127875(c.373-4432G>A), 55128445(c.373-3862C>T), 55128878(c.373-3429A>G), 55128888(c.373-3419C>T), 55129374(c.373-2933A>G), 55129413(c.373-2894A>G), 55129748(c.373-2559C>G), 55129795(c.373-2512C>T), 55131617(c.373-690A>T), 55131629(c.373-678G>A), 55132172(c.373-135C>T), +1kb 55132452(c.65C>G), 55134137(c.1750A>G), 55134426(c.2039A>G), 55134435(c.2048T>C), 55134702(c.2315A>C), 55134963(c.2576C>T), 55135158(c.2771T>C), 55135356(c.2969C>G), 55135357(c.2970A>G), 55135667(c.3280T>G), 55135737(c.3350C>T), 55136267(c.3880A>G), 55136326(c.3939A>T), 55136343(c.3956C>T), 55136400(c.4013A>G), 55136485(c.4098T>C), 55136563(c.4176A>T), 55136870(c.4483C>T), 55136876(c.4489G>C), 55136918(c.4531A>G), 55137147(c.4760A>G), 55137197(c.4810A>G), 55137340(c.*4953A>G),
Insertions	-1kb 55100610 (c.-4734_-4733insCACAAACTT), 55101689 (c.-3655_-3654insCCCCA), 55102233 (c.-3111_-3110insCT), 55102881 (c.-2463_-2462insTTTA), 5'UTR CDS 3'UTR INTRON 55105723 (c.175+211dupC), 55108607 (c.175+3101dupT), 55110432 (c.176-2601_176-2600insTCTAA), 55117099 (c.372+3331_372+3333dupACA), 55119135 (c.372+5364_372+5365dupAC), 55119371 (c.372+5600_372+5601dupAA), 55120032 (c.372+6269_372+6273dupGTTTT), 55120911 (c.372+7144dupT), 55120914 (c.372+7144dupT), 55120926 (c.372+7158dupT), 55120929 (c.372+7159_372+7160insT), 55120936 (c.372+7167dupT), 55120939 (c.372+7170dupT), 55123009 (c.372+9237_372+9239dupAAA), 55123104 (c.373-9202_373-9201insTT), 55124170 (c.373-8130_373-8129dupAA), 55126635 (c.373-5661_373-5660dupAA), 55127778 (c.373-4529_373-4528insAC), 55128254 (c.373-4045_373-4044dupTT), 55130815 (c.373-1492_373-1491insTAGT), 55131141 (c.373-1165dupG), 55131798 (c.373-509dupA), 55131802 (c.373-505dupA), +1kb 55133900 (c.1513_1514insAG), 55134890 (c.2503_2504insT), 55135617 (c.3230_3231insT),
Deletions	-1kb 55100752 (c.-4591_-4583delAAACTAAAA), 55100841 (c.-4502_-4500delAAA), 55101641 (c.-3702delA), 55101849 (c.-3494delT), 5'UTR CDS 3'UTR INTRON 55106587 (c.175+1083_175+1084delTT), 55111217 (c.176-1818_176-1813delAGGAGA), 55112340 (c.176-685_176-684delAA), 55114534 (c.372+766_372+767delTA), 55116863 (c.372+3096delC), 55118825 (c.372+5057delA), 55119139 (c.372+5380_372+5382delATA), 55119149 (c.372+5380_372+5382delATA), 55120839 (c.372+7070_372+7075delAGAAGA), 55127611 (c.373-4695delT), 55127626 (c.373-4680_373-4675delCATATA), 55127799 (c.373-4507_373-4504delCTCT), 55129287 (c.373-3017_373-3016delCT), 55130031 (c.373-2264_373-2261delGAGA), 55131701 (c.373-595_373-592delGCGC), 55131711 (c.373-595_373-592delGCGC), 55131850 (c.373-456_373-455delCT), +1kb
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000161315)	MECPAPDATDAADPGEAGPYKGSEEPEGREPDGVRFDRERARRLWEAVSGAQPAGREEVE HMIQKNQCLFTSTQCKVCCAMLISESQKLAHYQSKKHANKVKRYLAIHGMETIKGDVKRL DSDQVTQNIGDTREPDASANTTHSKGLKHSA
MSMv4 transcript	MECPAPDATDAADPGEAGPYKGSEEPEGREPDGVRFDRERARRLWEAVSGAQPAGREEVE HMIQKNQCLFTSTQCKVCCAMLISESQKLAHYQSKKHANKVKRYLAIHGMETIKGDVKRL DSDQVTQNIGDTREPDASANTTHSKGLKHSA
homology	100.00 (151 / 151)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Zfp346 (ENSMUSG00000021481)
Transcript ID	ENSMUST00000161315

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........ACCCCATAAAGTGAAGATGGCTCCCAACACTAGCCTCAAATACATCATGA CAATCCCCATGCCTCAGCCTCCAGAGTGATATAATTACAGGCAGGCACCACATCCAACCT TATTATTGTCTGGGTTTTTGTTTGTTTTGTGGGTGTGTTTTGTTTCGTTGAGAGATGATC TATTATTGGAGCAGAGGTTTGTCTTGAACTCCTGGTCGTCTTGCGTCCTCCAGAGTACTT TGACCACAGCCTTAACTATCTTTTTCTCGAACAATGTCTTTTTTTTCTCAAATGTGCATT TCTCTAACCTTAGTCTCCCAAATTTTGGAATAGCAAGTATGAGCCACCGTGCTCAGCCAT TAGTAAGTGCTTCTTAGACAGGGTCTCAGGTAGCCCAGGCTGGCCTCAAGCTCCTAATCT TATATCCTCCACCTCCTGTGTATTGAGATGAAGAGCTGTACCATTATGTCTGCTTTAATA AGCTAAGTAAAACATTTCTAGAATCTGGGTCTTAGGTTCTCTTCCAAAGAAATGGGAGAA ATTGCCGGGCATGGTGGTGCATGCCTTTGATCCCAGCACTCGGGAGGCAGAGGCAGGAGG ATTTCTGAGTTCGAGGCCAGCCTGGTCTTCAGAGTGAGTGCCAGGACAGCCAGGGCTACA CAGAGAAACCCTGTCTCGAAAAACCAAAAAGAAAAAAGAAAAGAAATGGGAGATAATTTT CCACATATAGAAAAAGGAAATGACAAGTGTCCGTCAGTGGCTCACCTTGAGCAAAACTGA GAGCCCTGAGCTAAGAAGTGATCAACATGCACCGTTTTTTTCCAATTCACTGGACTCCTA AGGCGCCAGAGGAACCAAAACAAAATGAGCCTCTGGGCCCCGCCTCCTCTGGGCCCCGCC CCCTCAGGGCCCCGCCCCAGCGGGACTCTGCAGAGCCCAAACTTCGCGAGAGTTGCTGGC CGGGTCAAATCCCCGCCCACCCACTGCTCGTGGTAGCAGGCCGCATGCGC
1	EXON 1	55,105,314	55,105,518	-	1	205	AGCTTCTTAACGGCGCGTCTTGCCGGAAAGATGGAGTGTCCTGCGCCCGATGCTACGGAT GCTGCGGACCCTGGAGAAGCCGGACCGTACAAGGGCTCCGAGGAGCCGGAGGGTCGGGAA CCGGACGGAGTGCGCTTTGACCGCGAGAGGGCGCGTCGCCTGTGGGAAGCTGTGTCCGGT GCGCAGCCGGCGGGGAGGGAGGAAG
	INTRON 1 - 2	55,105,519	55,113,035			7,517	GTGAGTCGGGGGCTCCGGGGTTGGC..........TACATGATTTCTTTTCCCTCTGTAG
2	EXON 2	55,113,036	55,113,139	1	0	104	TGGAACACATGATCCAGAAGAACCAGTGTCTCTTCACCAGCACCCAGTGTAAGGTCTGCT GTGCCATGCTGATTTCTGAGTCTCAGAAGCTGGCGCATTACCAG
	INTRON 2 - 3	55,113,140	55,113,677			538	GTAGGCAATTTCTACTGTCTTCGTG..........CTGTCTTTTTGCTGGGTTCTTGCAG
3	EXON 3	55,113,678	55,113,770	0	0	93	AGCAAAAAACATGCCAACAAAGTGAAGAGATACCTAGCAATCCATGGAATGGAGACAATA AAGGGGGACGTGAAGAGGCTAGACTCAGATCAG
	INTRON 3 - 4	55,113,771	55,132,306			18,536	GTAACACAGCCGCCTTGTTGACACT..........CTGTGTCTGTGTTTTCAAATTACAG
4	EXON 4	55,132,307	55,132,387	0	-	81	GTCACCCAAAACATTGGTGACACTCGGGAGCCAGACGCCAGTGCAAACACAACCCACTCC AAAGGACTCAAGCACAGTGCA
	3' upstream sequence						AGACTAAAGCTGTCCCTGCCTGGTCAGCCTGGTGGGACAGCCATAAGCCAGTTCCTGGTG ACTGGTTAGCCGTGGCTCCTTCCTCCTCCTCTCTTATATCCGAAGAATGTGGAGGCATGA GGCCAACTTGGGCTGCAGATCTGCAGATAGCCTGACTGCGCCCAGATGCAGCTCCTCCTG CCCCTCTTGAGCATGGCCCTATAGGCCATGGCAGGAGACAGGGCTCTGAGAAGACCTGAG GTGAAGGTTTAGAGGTTGGCCTTCCCCACCCCTCTGGGTGTATGTCCTACAGTCCCGATG TCTGTTTTTACTCTCAAGGTCAGTTGGGAGCAAGGTCCTGCAGAGAAGGGAGAGCACTGT CTCTGGGCTCCAGGCAGCTTTGTGTAGAAATGTGGAGCTAATGTGTCATTTCCTATCCCT CAAGTGTGCAGGCTTGCTAGGTATAGATCCTGCCAACCATGAAGTCTCCCAGAAAACAGA GTCTCCGGCAGAGCACTGCCATCTCCGCTGCCTGCTGTCTCTCCAGTTCCCTCGTGGTGC TAGGCAGCTGCAGCAGCTCGGCGTCAGAGGAGACTTGAGTGCCCACTGGGGTCCTGATAG GCACCTAAGGGGGTGCACCAACCCAGGGCCATGTGAGAAAGTCTCCTACCTGCTATGTTC CTTGATTCTGTGCCCTTGTAGGTAACTGCCTCCTGCCAGCCTACTAAAAGGTCACTTGGT GTTAGCTCTATGCCCTTGTGTAGTGGGCGATCCTACCCAGTTGCTGTGGTGCTATCCCTC CCTTGACCTCCTCAAGAAGATTCTGGGGGAACTAAAAAGGAATTTAGAACTGGTGCAGGT TCTACAGAGAGCAATAGGGTCCCCAGACCCTAACCTGAGAAATTCCTTCTGGGTTTGTGT CCTGGGATCCACTGCAGTGGGTTTATACATAACTGTGGATGGAGCAGGTCTTCCAGGAAG TATTCCTAAAGCTTGTAGAGATAAAACAGCTTCCTTGTTA..........

Sequence Detail Report

Gene Symbol (Gene ID)	Zfp346 (ENSMUSG00000021481)
Transcript ID	ENSMUST00000161315

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 151 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information