MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Stau2 (ENSMUSG00000025920)

Cross Reference

CCDS	CCDS48223.1
EMBL	AF459099, AF459100, AK015087, ...show all
Fantom	3830432A14, 4930404M18
GO	GO:0003725, GO:0005730, GO:0005783, ...show all
goslim_goa	GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name	Stau2-009
OTTP	OTTMUSP00000044462
OTTT	OTTMUST00000082860
PDB	1UHZ
protein_id	AAH10300.1, AAH25118.1, AAN37928.1, ...show all

RefSeq_mRNA_predicted	XM_006495532.2
RefSeq_peptide_predicted	XP_006495595.1
UCSC	uc007ajo.2
UniParc	UPI00000E8BA6
Uniprot/SWISSPROT	Q8CJ67
Vega_transcript	OTTMUST00000082860, Stau2-009
Vega_translation	178773, OTTMUSP00000044462

Definition

protein_id:ENSMUSP00000123827
translation:

MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG
SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTV
GNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLV
FEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL
KKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSER
GMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENK
GWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFF
SVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQAA
LSALKQFSEQGLESIDGAVNVEKGSLEKQAKHLREKADNNQAKPASISQDCKKSKSAI

Chromosome

Length
Position(start - end)

279,585
16,229,773 - 16,509,359

Orient to Chromosome

minus

Link

Location : (1:16229773-16509359)
/

Detail Map

name	Gm28095 (ENSMUSG00000100868)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm28095 note : predicted gene 28095 [Source:MGI Symbol;Acc:MGI:5578801]

name	Stau2 (ENSMUSG00000025920)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Stau2 note : staufen (RNA binding protein) homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1352508]

name	Gm7568 (ENSMUSG00000089982)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm7568 note : predicted gene 7568 [Source:MGI Symbol;Acc:MGI:3649156]

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000162751

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000054668

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000162627

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000027052

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000162435

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000159558

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000128957

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000131257

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000162007

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000127420

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000149320

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000151888

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000153966

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000115359

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000145092

name	Stau2 (ENSMUSG00000025920)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000144138

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14831.2 Uniprot/SWISSPROT:Q8CJ67 RefSeq_peptide:NP_079579 RefSeq_mRNA:NM_025303.3 Vega_transcript:OTTMUST00000082849 Vega_transcript:Stau2-001 UCSC:uc007ajn.2 Fantom:3830432A14 Fantom:4930404M18 EMBL:AF459099 EMBL:AF459100 EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118 GO:GO:0003725 GO:GO:0005730 GO:GO:0005783 GO:GO:0005874 GO:GO:0006810 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-001 PDB:1UHZ Vega_translation:178766 Vega_translation:OTTMUSP00000044454 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005730 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH10300.1 protein_id:AAH25118.1 protein_id:AAN37928.1 protein_id:AAN37929.1 protein_id:BAB29708.1 protein_id:BAC25926.1 OTTP:OTTMUSP00000044454 OTTT:OTTMUST00000082849 UniParc:UPI00000E8BA5
definition	note : transcript_id=ENSMUST00000162751 protein_id : ENSMUSP00000124505 translation : MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQAALSALKQFSEQGLESIDGAVNVEKGSLEKQAKHLREKADNNQAKPASISQDCKKSKSAI

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14831.2 Uniprot/SWISSPROT:Q8CJ67 RefSeq_mRNA_predicted:XM_006495528.2 RefSeq_mRNA_predicted:XM_011238387.1 RefSeq_peptide_predicted:XP_006495591.1 RefSeq_peptide_predicted:XP_011236689.1 Vega_transcript:OTTMUST00000086841 Vega_transcript:Stau2-013 UCSC:uc007ajn.2 Fantom:3830432A14 Fantom:4930404M18 EMBL:AF459099 EMBL:AF459100 EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118 GO:GO:0003725 GO:GO:0005730 GO:GO:0005783 GO:GO:0005874 GO:GO:0006810 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-013 PDB:1UHZ Vega_translation:178761 Vega_translation:OTTMUSP00000047064 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005730 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH10300.1 protein_id:AAH25118.1 protein_id:AAN37928.1 protein_id:AAN37929.1 protein_id:BAB29708.1 protein_id:BAC25926.1 OTTP:OTTMUSP00000047064 OTTT:OTTMUST00000086841 UniParc:UPI00000E8BA5
definition	note : transcript_id=ENSMUST00000054668 protein_id : ENSMUSP00000053190 translation : MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQAALSALKQFSEQGLESIDGAVNVEKGSLEKQAKHLREKADNNQAKPASISQDCKKSKSAI

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS48223.1 Uniprot/SWISSPROT:Q8CJ67 RefSeq_mRNA_predicted:XM_011238389.1 RefSeq_peptide_predicted:XP_011236691.1 Vega_transcript:OTTMUST00000086840 Vega_transcript:Stau2-012 UCSC:uc007ajo.2 Fantom:3830432A14 Fantom:4930404M18 EMBL:AF459099 EMBL:AF459100 EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118 GO:GO:0003725 GO:GO:0005730 GO:GO:0005783 GO:GO:0005874 GO:GO:0006810 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-012 PDB:1UHZ Vega_translation:178760 Vega_translation:OTTMUSP00000047063 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005730 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH10300.1 protein_id:AAH25118.1 protein_id:AAN37928.1 protein_id:AAN37929.1 protein_id:BAB29708.1 protein_id:BAC25926.1 OTTP:OTTMUSP00000047063 OTTT:OTTMUST00000086840 UniParc:UPI00000E8BA6
definition	note : transcript_id=ENSMUST00000162627 protein_id : ENSMUSP00000123781 translation : MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQAALSALKQFSEQGLESIDGAVNVEKGSLEKQAKHLREKADNNQAKPASISQDCKKSKSAI

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS48223.1 Uniprot/SWISSPROT:Q8CJ67 RefSeq_peptide:NP_001104742 RefSeq_mRNA:NM_001111272.1 Vega_transcript:OTTMUST00000082851 Vega_transcript:Stau2-003 UCSC:uc007ajo.2 Fantom:3830432A14 Fantom:4930404M18 EMBL:AF459099 EMBL:AF459100 EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118 GO:GO:0003725 GO:GO:0005730 GO:GO:0005783 GO:GO:0005874 GO:GO:0006810 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-003 PDB:1UHZ Vega_translation:178768 Vega_translation:OTTMUSP00000044456 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005730 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH10300.1 protein_id:AAH25118.1 protein_id:AAN37928.1 protein_id:AAN37929.1 protein_id:BAB29708.1 protein_id:BAC25926.1 OTTP:OTTMUSP00000044456 OTTT:OTTMUST00000082851 UniParc:UPI00000E8BA6
definition	note : transcript_id=ENSMUST00000027052 protein_id : ENSMUSP00000027052 translation : MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQAALSALKQFSEQGLESIDGAVNVEKGSLEKQAKHLREKADNNQAKPASISQDCKKSKSAI

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS48223.1 Uniprot/SWISSPROT:Q8CJ67 RefSeq_mRNA_predicted:XM_006495532.2 RefSeq_peptide_predicted:XP_006495595.1 Vega_transcript:OTTMUST00000082860 Vega_transcript:Stau2-009 UCSC:uc007ajo.2 Fantom:3830432A14 Fantom:4930404M18 EMBL:AF459099 EMBL:AF459100 EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118 GO:GO:0003725 GO:GO:0005730 GO:GO:0005783 GO:GO:0005874 GO:GO:0006810 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-009 PDB:1UHZ Vega_translation:178773 Vega_translation:OTTMUSP00000044462 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005730 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH10300.1 protein_id:AAH25118.1 protein_id:AAN37928.1 protein_id:AAN37929.1 protein_id:BAB29708.1 protein_id:BAC25926.1 OTTP:OTTMUSP00000044462 OTTT:OTTMUST00000082860 UniParc:UPI00000E8BA6
definition	note : transcript_id=ENSMUST00000162435 protein_id : ENSMUSP00000123827 translation : MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQAALSALKQFSEQGLESIDGAVNVEKGSLEKQAKHLREKADNNQAKPASISQDCKKSKSAI

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:Q8CJ67 RefSeq_peptide_predicted:XP_011236693.1 Vega_transcript:OTTMUST00000086844 Vega_transcript:Stau2-016 UCSC:uc007ajq.2 Fantom:3830432A14 Fantom:4930404M18 EMBL:AF459099 EMBL:AF459100 EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118 GO:GO:0003725 GO:GO:0005730 GO:GO:0005783 GO:GO:0005874 GO:GO:0006810 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-016 PDB:1UHZ Vega_translation:178764 Vega_translation:OTTMUSP00000047067 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005730 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH10300.1 protein_id:AAH25118.1 protein_id:AAN37928.1 protein_id:AAN37929.1 protein_id:BAB29708.1 protein_id:BAC25926.1 OTTP:OTTMUSP00000047067 OTTT:OTTMUST00000086844 UniParc:UPI0000027D13
definition	note : transcript_id=ENSMUST00000159558 protein_id : ENSMUSP00000125726 translation : MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQV

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide_predicted:XP_011236690.1 Vega_transcript:OTTMUST00000082854 Vega_transcript:Stau2-006 Uniprot/SPTREMBL:D3Z6D2 UCSC:uc007ajn.2 EMBL:AC115952 EMBL:AC116695 EMBL:AC162448 EMBL:AC167117 GO:GO:0003725 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-006 Vega_translation:178771 Vega_translation:OTTMUSP00000044459 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 OTTP:OTTMUSP00000044459 OTTT:OTTMUST00000082854 UniParc:UPI00004761C8
definition	note : transcript_id=ENSMUST00000128957 protein_id : ENSMUSP00000122410 translation : MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQV

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000086843 Vega_transcript:Stau2-015 Uniprot/SPTREMBL:E2QRQ3 UCSC:uc007ajq.2 EMBL:AC115952 EMBL:AC116695 EMBL:AC162448 EMBL:AC167117 GO:GO:0003725 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-015 Vega_translation:178763 Vega_translation:OTTMUSP00000047066 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 OTTP:OTTMUSP00000047066 OTTT:OTTMUST00000086843 UniParc:UPI0001DD36E6
definition	note : transcript_id=ENSMUST00000131257 protein_id : ENSMUSP00000121410 translation : MFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQV

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:Q8CJ67 RefSeq_peptide_predicted:XP_011236693.1 Vega_transcript:OTTMUST00000082852 Vega_transcript:Stau2-004 UCSC:uc007ajq.2 Fantom:3830432A14 Fantom:4930404M18 EMBL:AF459099 EMBL:AF459100 EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118 GO:GO:0003725 GO:GO:0005730 GO:GO:0005783 GO:GO:0005874 GO:GO:0006810 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-004 PDB:1UHZ Vega_translation:178769 Vega_translation:OTTMUSP00000044457 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005730 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH10300.1 protein_id:AAH25118.1 protein_id:AAN37928.1 protein_id:AAN37929.1 protein_id:BAB29708.1 protein_id:BAC25926.1 OTTP:OTTMUSP00000044457 OTTT:OTTMUST00000082852 UniParc:UPI0000027D13
definition	note : transcript_id=ENSMUST00000162007 protein_id : ENSMUSP00000124303 translation : MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQV

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000082853 Vega_transcript:Stau2-005 Uniprot/SPTREMBL:D6RGR9 EMBL:AC115952 EMBL:AC116695 EMBL:AC162448 EMBL:AC167117 GO:GO:0003725 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-005 Vega_translation:178770 Vega_translation:OTTMUSP00000044458 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 OTTP:OTTMUSP00000044458 OTTT:OTTMUST00000082853 UniParc:UPI0001889EBF
definition	note : transcript_id=ENSMUST00000127420 protein_id : ENSMUSP00000122116 translation : MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRGICKTTH

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide_predicted:XP_011236690.1 Vega_transcript:OTTMUST00000086842 Vega_transcript:Stau2-014 Uniprot/SPTREMBL:D3Z6D2 UCSC:uc007ajn.2 EMBL:AC115952 EMBL:AC116695 EMBL:AC162448 EMBL:AC167117 GO:GO:0003725 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-014 Vega_translation:178762 Vega_translation:OTTMUSP00000047065 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 OTTP:OTTMUSP00000047065 OTTT:OTTMUST00000086842 UniParc:UPI00004761C8
definition	note : transcript_id=ENSMUST00000149320 protein_id : ENSMUSP00000118489 translation : MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQV

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000082877 Vega_transcript:Stau2-010 Uniprot/SPTREMBL:E0CZD3 EMBL:AC115952 EMBL:AC116695 EMBL:AC162448 EMBL:AC167117 GO:GO:0003725 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-010 Vega_translation:178774 Vega_translation:OTTMUSP00000047061 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 OTTP:OTTMUSP00000047061 OTTT:OTTMUST00000082877 UniParc:UPI0001DD36E7
definition	note : transcript_id=ENSMUST00000151888 protein_id : ENSMUSP00000125473 translation : MKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFG

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000082859 Vega_transcript:Stau2-008 Uniprot/SPTREMBL:D3Z461 EMBL:AC115952 EMBL:AC116695 EMBL:AC162448 EMBL:AC167117 GO:GO:0003725 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-008 Vega_translation:178772 Vega_translation:OTTMUSP00000044461 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 OTTP:OTTMUSP00000044461 OTTT:OTTMUST00000082859 UniParc:UPI0001DD36E8
definition	note : transcript_id=ENSMUST00000153966 protein_id : ENSMUSP00000117537 translation : MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPT

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:Q8CJ67 Vega_transcript:OTTMUST00000082850 Vega_transcript:Stau2-002 UCSC:uc007ajr.2 Fantom:3830432A14 Fantom:4930404M18 EMBL:AF459099 EMBL:AF459100 EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118 GO:GO:0003725 GO:GO:0005730 GO:GO:0005783 GO:GO:0005874 GO:GO:0006810 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-002 PDB:1UHZ Vega_translation:178767 Vega_translation:OTTMUSP00000044455 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005730 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH10300.1 protein_id:AAH25118.1 protein_id:AAN37928.1 protein_id:AAN37929.1 protein_id:BAB29708.1 protein_id:BAC25926.1 OTTP:OTTMUSP00000044455 OTTT:OTTMUST00000082850 UniParc:UPI00000EAC2A
definition	note : transcript_id=ENSMUST00000115359 protein_id : ENSMUSP00000111016 translation : MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPVGKLKETVLSPAHEVMIVGITHYSADNFFLHWCL

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000082878 Vega_transcript:Stau2-011 Uniprot/SPTREMBL:D3YXB2 EMBL:AC115952 EMBL:AC116695 EMBL:AC162448 EMBL:AC167117 GO:GO:0003725 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-011 Vega_translation:178775 Vega_translation:OTTMUSP00000044474 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 OTTP:OTTMUSP00000044474 OTTT:OTTMUST00000082878 UniParc:UPI0001889EBE
definition	note : transcript_id=ENSMUST00000145092 protein_id : ENSMUSP00000115041 translation : MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPVGKLKETVLSPAHEVMIVGITHYSADNFFLHWCL

name	Stau2 (ENSMUSG00000025920) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SWISSPROT:Q8CJ67 Vega_transcript:OTTMUST00000086845 Vega_transcript:Stau2-017 UCSC:uc007ajr.2 Fantom:3830432A14 Fantom:4930404M18 EMBL:AF459099 EMBL:AF459100 EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118 GO:GO:0003725 GO:GO:0005730 GO:GO:0005783 GO:GO:0005874 GO:GO:0006810 GO:GO:0016020 GO:GO:0044822 MGI_trans_name:Stau2-017 PDB:1UHZ Vega_translation:178765 Vega_translation:OTTMUSP00000047068 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005730 goslim_goa:GO:0005737 goslim_goa:GO:0005783 goslim_goa:GO:0005856 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAH10300.1 protein_id:AAH25118.1 protein_id:AAN37928.1 protein_id:AAN37929.1 protein_id:BAB29708.1 protein_id:BAC25926.1 OTTP:OTTMUSP00000047068 OTTT:OTTMUST00000086845 UniParc:UPI00000EAC2A
definition	note : transcript_id=ENSMUST00000144138 protein_id : ENSMUSP00000119130 translation : MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPVGKLKETVLSPAHEVMIVGITHYSADNFFLHWCL

name
type	misc_feature
link
xref
definition	note : contig AC167117.5 1..56664(-1)

name
type	misc_feature
link
xref
definition	note : contig AC116695.12 1..108074(-1)

name
type	misc_feature
link
xref
definition	note : contig AC115952.11 1..83713(-1)

name
type	misc_feature
link
xref
definition	note : contig AC162448.10 1..125114(-1)

name	Gm28095 (ENSMUSG00000100868)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000122413 Vega_transcript:OTTMUST00000122413 Clone_based_vega_transcript:RP24-73D23.1-001 MGI_trans_name:Gm28095-001 OTTT:OTTMUST00000122413 RNACentral:URS00007884B4
definition	note : antisense note : transcript_id=ENSMUST00000186343

name	Stau2 (ENSMUSG00000025920)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000082855 Vega_transcript:OTTMUST00000082855 MGI_trans_name:Stau2-007 OTTT:OTTMUST00000082855
definition	note : processed_transcript note : transcript_id=ENSMUST00000115360

name	Gm7568 (ENSMUSG00000089982)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000086847 Vega_transcript:OTTMUST00000086847 Clone_based_vega_transcript:AC167117.2-001 MGI_trans_name:Gm7568-001 OTTT:OTTMUST00000086847 RNACentral:URS0000761A1D
definition	note : antisense note : transcript_id=ENSMUST00000160446

name	Gm7568 (ENSMUSG00000089982)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000086849 Vega_transcript:OTTMUST00000086849 Clone_based_vega_transcript:AC167117.2-003 MGI_trans_name:Gm7568-003 OTTT:OTTMUST00000086849 RNACentral:URS0000760C73
definition	note : antisense note : transcript_id=ENSMUST00000161626

name	Gm7568 (ENSMUSG00000089982)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000086848 Vega_transcript:OTTMUST00000086848 Clone_based_vega_transcript:AC167117.2-002 MGI_trans_name:Gm7568-002 OTTT:OTTMUST00000086848 RNACentral:URS000078163A
definition	note : antisense note : transcript_id=ENSMUST00000159190

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Stau2 (ENSMUSG00000025920)
Transcript ID	ENSMUST00000162435

Reports
substitution
cSNPs	2
Insertion	168
Deletion	165
SNPs	+1kb 16520128(c.-10769T>C), 16520176(c.-10817G>A), 16520502(c.-11143G>T), 16520701(c.-11342G>C), 16520732(c.-11373T>A), 16520855(c.-11496C>T), 16521028(c.-11669T>C), 16521034(c.-11675A>G), 16521440(c.-12081T>C), 16521536(c.-12177A>G), 16522423(c.-13064A>G), 16522665(c.-13306A>G), 16522755(c.-13396T>C), 16522773(c.-13414C>T), 16522781(c.-13422T>A), 16522972(c.-13613T>C), 16523002(c.-13643C>T), 16523171(c.-13812A>G), 16523518(c.-14159T>C), 16523569(c.-14210T>C), 16523929(c.-14570A>T), 16524086(c.-14727A>T), 16524087(c.-14728C>T), 16524422(c.-15063T>C), 16524429(c.-15070G>T), 5'UTR CDS 16440376(c.261G>A), 16463087(c.126G>C), 3'UTR 16228841(c.932T>C), 16229614(c.159T>C), INTRON 16230807(c.1523+196C>A), 16231163(c.1435-72G>A), 16231168(c.1435-77G>T), 16231473(c.1435-382A>G), 16231487(c.1435-396A>G), 16231522(c.1435-431T>G), 16231814(c.1435-723A>G), 16231822(c.1435-731A>G), 16231908(c.1435-817T>C), 16231956(c.1435-865A>G), 16232042(c.1435-951A>G), 16232124(c.1435-1033A>G), 16232811(c.1435-1720G>T), 16232894(c.1435-1803A>T), 16233134(c.1435-2043G>A), 16233470(c.1435-2379A>G), 16233487(c.1435-2396A>T), 16233692(c.1435-2601G>A), 16233699(c.1435-2608A>G), 16233958(c.1435-2867A>G), 16233978(c.1435-2887A>T), 16233981(c.1435-2890A>G), 16233992(c.1435-2901A>G), 16234050(c.1435-2959G>A), 16234051(c.1435-2960A>C), 16234121(c.1435-3030C>T), 16234154(c.1435-3063C>T), 16234160(c.1435-3069T>G), 16234166(c.1435-3075C>T), 16234170(c.1435-3079A>T), 16234185(c.1435-3094A>T), 16234315(c.1435-3224A>G), 16234322(c.1435-3231A>C), 16234442(c.1435-3351T>A), 16234443(c.1435-3352T>A), 16234444(c.1435-3353T>A), 16234447(c.1435-3356A>G), 16234538(c.1435-3447C>A), 16234601(c.1435-3510A>G), 16234619(c.1435-3528A>G), 16234630(c.1435-3539C>T), 16234635(c.1435-3544T>C), 16234654(c.1435-3563G>A), 16234664(c.1435-3573T>C), 16234665(c.1435-3574G>A), 16234894(c.1435-3803G>A), 16234909(c.1435-3818C>T), 16235049(c.1435-3958G>T), 16235320(c.1435-4229G>A), 16235324(c.1435-4233T>C), 16235347(c.1435-4256C>G), 16235361(c.1435-4270C>T), 16235407(c.1435-4316C>T), 16235453(c.1435-4362G>A), 16235502(c.1435-4411G>A), 16235544(c.1435-4453T>C), 16235595(c.1435-4504A>G), 16235604(c.1435-4513G>A), 16235637(c.1435-4546A>G), 16235713(c.1435-4622G>A), 16235758(c.1435-4667G>A), 16235768(c.1435-4677C>T), 16235915(c.1435-4824A>G), 16236047(c.1435-4956G>A), 16237704(c.1435-6613A>C), 16238141(c.1435-7050A>G), 16238237(c.1435-7146G>T), 16238611(c.1435-7520T>C), 16238627(c.1435-7536A>G), 16238631(c.1435-7540C>T), 16238642(c.1435-7551T>C), 16238676(c.1435-7585T>A), 16238986(c.1435-7895C>T), 16239039(c.1435-7948A>G), 16239133(c.1435-8042C>T), 16239287(c.1435-8196C>T), 16239485(c.1435-8394G>A), 16239627(c.1435-8536G>A), 16239942(c.1435-8851C>T), 16239987(c.1435-8896G>A), 16240008(c.1435-8917C>T), 16240121(c.1435-9030G>A), 16240608(c.1435-9517T>C), 16241372(c.1435-10281A>G), 16241473(c.1435-10382G>A), 16241477(c.1435-10386G>A), 16241481(c.1435-10390G>A), 16241485(c.1435-10394G>A), 16241580(c.1435-10489T>C), 16241665(c.1435-10574T>A), 16241755(c.1435-10664A>G), 16241785(c.1435-10694G>C), 16241817(c.1435-10726G>A), 16241845(c.1435-10754T>C), 16241994(c.1435-10903T>C), 16241998(c.1435-10907C>A), 16242162(c.1435-11071C>T), 16242208(c.1435-11117G>A), 16242226(c.1435-11135T>C), 16242593(c.1435-11502A>G), 16242634(c.1435-11543A>G), 16242641(c.1435-11550T>C), 16242718(c.1435-11627C>T), 16243101(c.1435-12010A>T), 16243224(c.1435-12133T>C), 16243230(c.1435-12139G>A), 16243358(c.1435-12267G>T), 16243402(c.1435-12311T>G), 16243426(c.1435-12335C>A), 16243429(c.1435-12338A>G), 16243496(c.1435-12405T>A), 16243620(c.1435-12529C>T), 16243670(c.1435-12579C>T), 16243807(c.1435-12716G>A), 16243828(c.1435-12737G>C), 16243863(c.1435-12772T>C), 16243879(c.1435-12788C>A), 16244424(c.1435-13333G>A), 16244449(c.1435-13358A>G), 16244897(c.1435-13806C>T), 16245047(c.1435-13956T>C), 16245162(c.1435-14071C>T), 16245336(c.1435-14245T>C), 16245387(c.1435-14296T>A), 16245469(c.1435-14378A>G), 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Insertions	+1kb 16521423 (c.-12065_-12064insT), 16523146 (c.-13788_-13787insG), 5'UTR CDS 3'UTR INTRON 16231126 (c.1435-37_1435-36dupAA), 16231618 (c.1435-529_1435-528dupCT), 16233020 (c.1435-1931_1435-1930dupAT), 16234434 (c.1435-3344dupT), 16235381 (c.1435-4291dupA), 16238122 (c.1435-7032dupA), 16238729 (c.1435-7639dupT), 16239563 (c.1435-8474_1435-8473dupCA), 16240365 (c.1435-9275_1435-9274insA), 16243685 (c.1435-12596_1435-12595dupGA), 16246795 (c.1435-15707_1435-15705dupGTT), 16247058 (c.1435-15968dupG), 16247861 (c.1435-16771dupA), 16248214 (c.1435-17124_1435-17123insACACACAA), 16251703 (c.1435-20613dupT), 16255060 (c.1435-23970_1435-23969insA), 16258955 (c.1435-27868_1435-27865dupCTAA), 16259369 (c.1435-28279dupC), 16259984 (c.1435-28894_1435-28893insG), 16261779 (c.1435-30689dupC), 16265700 (c.1435-34611_1435-34610dupGT), 16265947 (c.1435-34857_1435-34856insAGA), 16266034 (c.1435-34944dupC), 16266782 (c.1435-35692dupA), 16267965 (c.1435-36875_1435-36874insATTTTA), 16275226 (c.1435-44136_1435-44135insTGTGT), 16279441 (c.1435-48352_1435-48351dupTT), 16279447 (c.1435-48357_1435-48356insTT), 16281564 (c.1435-50474_1435-50473insGC), 16282407 (c.1435-51317_1435-51316insA), 16282424 (c.1435-51334_1435-51333insTT), 16286639 (c.1435-55549dupT), 16287008 (c.1435-55918_1435-55917insTC), 16288427 (c.1434+57275_1434+57276dupTT), 16289580 (c.1434+56120_1434+56123dupTACT), 16291772 (c.1434+53931dupT), 16291776 (c.1434+53927dupT), 16292085 (c.1434+53618dupT), 16292092 (c.1434+53611_1434+53612insT), 16292179 (c.1434+53524_1434+53525insTTGTT), 16293332 (c.1434+52371dupA), 16296787 (c.1434+48916dupA), 16296968 (c.1434+48735_1434+48736insT), 16299039 (c.1434+46664_1434+46665insAA), 16299070 (c.1434+46633_1434+46634insAAGTCAG), 16299687 (c.1434+46016_1434+46017insT), 16299754 (c.1434+45949dupA), 16299761 (c.1434+45942_1434+45943insA), 16300234 (c.1434+45468_1434+45469dupTT), 16301271 (c.1434+44431_1434+44432dupAG), 16302075 (c.1434+43628dupG), 16303336 (c.1434+42367_1434+42368insC), 16303482 (c.1434+42221_1434+42222insTT), 16304775 (c.1434+40926_1434+40928dupCCA), 16305019 (c.1434+40684dupA), 16305237 (c.1434+40465_1434+40466dupGT), 16305247 (c.1434+40456_1434+40457insTG), 16306803 (c.1434+38900_1434+38901insCTAA), 16307036 (c.1434+38667_1434+38668insACC), 16308470 (c.1434+37233_1434+37234insAAC), 16309003 (c.1434+36700_1434+36701insG), 16309990 (c.1434+35713_1434+35714insAA), 16310604 (c.1434+35099_1434+35100insT), 16310661 (c.1434+35040_1434+35042dupTTT), 16310668 (c.1434+35035_1434+35036insTTT), 16311463 (c.1434+34240dupT), 16312959 (c.1434+32744_1434+32745insG), 16313961 (c.1434+31742dupC), 16326761 (c.1434+18942dupA), 16327425 (c.1434+18278dupT), 16327601 (c.1434+18102dupT), 16329188 (c.1434+16515_1434+16516insT), 16329217 (c.1434+16486_1434+16487insCC), 16329684 (c.1434+16019_1434+16020insC), 16329866 (c.1434+15835_1434+15837dupGAT), 16334041 (c.1434+11662_1434+11663insC), 16334419 (c.1434+11284_1434+11285insGAC), 16334929 (c.1434+10774_1434+10775insGTGG), 16336628 (c.1434+9075_1434+9076insA), 16337298 (c.1434+8405dupT), 16337302 (c.1434+8401dupT), 16338118 (c.1434+7585_1434+7586insT), 16341712 (c.1434+3991dupT), 16342756 (c.1434+2946_1434+2947dupGT), 16343142 (c.1434+2560_1434+2561dupGT), 16343836 (c.1434+1867_1434+1868insCAAACA), 16346559 (c.1127-552_1127-549dupGGTG), 16355605 (c.1127-9595_1127-9594insCTCTCCT), 16359119 (c.1126+6956_1126+6959dupTACA), 16362468 (c.1126+3610dupT), 16364060 (c.1126+2018_1126+2019insT), 16364309 (c.1126+1769dupT), 16385358 (c.795+4462dupG), 16387979 (c.795+1841dupT), 16392026 (c.582+490_582+491insAACT), 16393175 (c.475-552_475-551insTTCTT), 16395384 (c.315-1175_315-1174insG), 16395424 (c.315-1215dupA), 16395429 (c.315-1220_315-1219insA), 16397468 (c.315-3259_315-3258insG), 16406176 (c.315-11968_315-11967dupGG), 16409341 (c.315-15134_315-15132dupATT), 16409453 (c.315-15244_315-15243insTTCTTCC), 16411893 (c.315-17684_315-17683insA), 16411998 (c.315-17789_315-17788insCCA), 16412381 (c.315-18172_315-18171insGT), 16414397 (c.315-20188_315-20187insAAGT), 16417880 (c.314+22440_314+22442dupGAG), 16422266 (c.314+18056_314+18057insAGATCCCAGAT), 16424486 (c.314+15836_314+15837insC), 16428513 (c.314+11809dupT), 16436604 (c.314+3718dupA), 16436891 (c.314+3431_314+3432insTTTT), 16438155 (c.314+2167_314+2168insTTTCTT), 16441421 (c.179-964dupT), 16442787 (c.179-2330dupA), 16443293 (c.179-2836dupT), 16443774 (c.179-3318_179-3317dupTA), 16445130 (c.179-4673_179-4672insATAATA), 16445225 (c.179-4768_179-4767insCC), 16445228 (c.179-4771_179-4770insC), 16446340 (c.179-5883dupA), 16449801 (c.179-9344dupT), 16449803 (c.179-9346_179-9345insT), 16451876 (c.178+11158_178+11159insTTT), 16459808 (c.178+3226_178+3227insTT), 16460919 (c.178+2115_178+2116insTT), 16461882 (c.178+1152_178+1153insG), 16462900 (c.178+133_178+134dupCA), 16468554 (c.19-5361_19-5360insTT), 16468631 (c.19-5438_19-5437insGA), 16468634 (c.19-5441_19-5440insAG), 16480666 (c.19-17473_19-17472insCTCA), 16482541 (c.19-19348dupT), 16482547 (c.19-19354dupT), 16483401 (c.19-20212_19-20208dupTTCTT), 16484446 (c.19-21253_19-21252insC), 16484460 (c.19-21267dupT), 16484463 (c.19-21270_19-21269insTT), 16484554 (c.19-21361_19-21360insAAAA), 16487723 (c.18+21618dupA), 16488373 (c.18+20968dupT), 16489414 (c.18+19927dupT), 16489772 (c.18+19564_18+19569dupTACACA), 16489816 (c.18+19525_18+19526insAT), 16489843 (c.18+19498_18+19499insATAT), 16491179 (c.18+18162_18+18163insAC), 16491964 (c.18+17377dupT), 16493811 (c.18+15530dupA), 16494675 (c.18+14666dupT), 16502636 (c.18+6705_18+6706insATTT), 16504067 (c.18+5274_18+5275insTTTAA), 16505675 (c.18+3666_18+3667insTCTATCTC), 16505962 (c.18+3379dupT), 16508329 (c.18+1012_18+1013insTG), 16513355 (c.-49-3948_-49-3947insC), 16513851 (c.-49-4444dupA), 16514220 (c.-49-4814_-49-4813dupTT), 16517142 (c.-50+2857_-50+2858dupAC), 16517608 (c.-50+2392_-50+2393insCAA), 16517638 (c.-50+2362dupA), 16517641 (c.-50+2359_-50+2360insA), 16518321 (c.-50+1679dupT), 16518428 (c.-50+1572_-50+1573insAA), 16518525 (c.-50+1475_-50+1476insGGT), 16518640 (c.-50+1360_-50+1361insG), -1kb
Deletions	+1kb 16520238 (c.-10882_-10880delTGG), 16520494 (c.-11136delC), 16521585 (c.-12227delG), 16522284 (c.-12928_-12926delTTT), 16522406 (c.-13052_-13048delAAAAA), 5'UTR CDS 3'UTR INTRON 16230636 (c.1523+363_1523+366delCTTC), 16232050 (c.1435-960delA), 16237105 (c.1435-6016_1435-6015delTT), 16237315 (c.1435-6228_1435-6225delCACA), 16238571 (c.1435-7482_1435-7481delTT), 16240226 (c.1435-9138_1435-9136delTTA), 16243275 (c.1435-12190_1435-12185delTGAGGC), 16243988 (c.1435-12909_1435-12898delATTTTTTTTGGG), 16244570 (c.1435-13482_1435-13480delAAA), 16247365 (c.1435-16275delA), 16247518 (c.1435-16433_1435-16428delAACAAC), 16250377 (c.1435-19288_1435-19287delGT), 16251934 (c.1435-20845_1435-20844delTT), 16252450 (c.1435-21360delT), 16253772 (c.1435-22682delA), 16254454 (c.1435-23366_1435-23364delATA), 16254860 (c.1435-23770delC), 16256715 (c.1435-25625delT), 16256991 (c.1435-25901delC), 16257845 (c.1435-26756_1435-26755delAA), 16259655 (c.1435-28567_1435-28565delAAG), 16260009 (c.1435-28921_1435-28919delGTG), 16260066 (c.1435-28977_1435-28976delGC), 16261292 (c.1435-30204_1435-30202delATA), 16261458 (c.1435-30373_1435-30368delGAATGT), 16264090 (c.1435-33003_1435-33000delATTA), 16267526 (c.1435-36437_1435-36436delAG), 16267990 (c.1435-36900delA), 16269733 (c.1435-38643delT), 16270896 (c.1435-39806delA), 16273553 (c.1435-42465_1435-42463delACA), 16274337 (c.1435-43247delC), 16275202 (c.1435-44113_1435-44112delGC), 16276602 (c.1435-45517_1435-45512delTATTTG), 16279369 (c.1435-48279delC), 16280553 (c.1435-49463delT), 16281553 (c.1435-50472_1435-50463delCGCACGCACA), 16281630 (c.1435-50551_1435-50540delAAAGTATAAAGT), 16282224 (c.1435-51135_1435-51134delCT), 16282477 (c.1435-51388_1435-51387delTG), 16290748 (c.1434+54953_1434+54955delGAT), 16291674 (c.1434+54029delT), 16292606 (c.1434+53097delT), 16295261 (c.1434+50441_1434+50442delCT), 16298516 (c.1434+47180_1434+47187delTGTTTTTT), 16299011 (c.1434+46692delT), 16301671 (c.1434+44031_1434+44032delAA), 16304014 (c.1434+41688_1434+41689delTT), 16305186 (c.1434+40516_1434+40517delAT), 16305626 (c.1434+40076_1434+40077delCA), 16308778 (c.1434+36925delA), 16316491 (c.1434+29212delT), 16326445 (c.1434+19254_1434+19258delTTCTT), 16327538 (c.1434+18165delC), 16330356 (c.1434+15342_1434+15347delTTTTCC), 16330702 (c.1434+15001delT), 16330916 (c.1434+14787delT), 16334116 (c.1434+11586_1434+11587delCC), 16335176 (c.1434+10526_1434+10527delTT), 16337227 (c.1434+8476delA), 16337452 (c.1434+8250_1434+8251delTA), 16338209 (c.1434+7494delA), 16338217 (c.1434+7486delA), 16339492 (c.1434+6204_1434+6211delAGGACCAG), 16339764 (c.1434+5936_1434+5939delGAAA), 16341397 (c.1434+4306delA), 16343695 (c.1434+2004_1434+2008delTTTTG), 16346143 (c.1127-143_1127-133delCAGGCATCAGG), 16352102 (c.1127-6096_1127-6092delAAAAA), 16352792 (c.1127-6782delA), 16354410 (c.1127-8401_1127-8400delTT), 16354566 (c.1127-8556delT), 16355969 (c.1127-9960_1127-9959delAA), 16357336 (c.1126+8742delA), 16358256 (c.1126+7819_1126+7822delAGTA), 16359981 (c.1126+6097delT), 16362728 (c.1126+3350delA), 16362880 (c.1126+3197_1126+3198delTT), 16363108 (c.1126+2970delG), 16364142 (c.1126+1928_1126+1936delTCATTCAGT), 16372307 (c.933+2366delG), 16378991 (c.796-4181delT), 16384518 (c.795+5299_795+5302delATCT), 16387745 (c.795+2073_795+2075delGGG), 16390223 (c.583-192_583-191delTT), 16392368 (c.582+144_582+148delTTATG), 16395615 (c.315-1409_315-1406delGTCT), 16396289 (c.315-2080delT), 16399939 (c.315-5733_315-5730delATTT), 16405268 (c.315-11062_315-11059delAATT), 16406613 (c.315-12405_315-12404delGT), 16408995 (c.315-14786delC), 16413197 (c.315-18990_315-18988delGTT), 16414497 (c.315-20293_315-20288delTTTTTG), 16419641 (c.314+20681delT), 16421396 (c.314+18926delA), 16434167 (c.314+6150_314+6155delCGTGTG), 16441300 (c.179-843delT), 16442221 (c.179-1765_179-1764delCT), 16443145 (c.179-2693_179-2688delAAAACC), 16443256 (c.179-2804_179-2799delTATATG), 16443439 (c.179-2987_179-2982delATGTAT), 16444188 (c.179-3734_179-3731delCCAA), 16444349 (c.179-3892delT), 16445161 (c.179-4704delG), 16447223 (c.179-6766delC), 16447527 (c.179-7075_179-7070delGTTGTT), 16451383 (c.179-10926delT), 16451971 (c.178+11060_178+11063delTCTT), 16452385 (c.178+10649delC), 16452429 (c.178+10600_178+10605delATAACC), 16459828 (c.178+3206delA), 16459834 (c.178+3200delA), 16460900 (c.178+2134delA), 16463428 (c.19-241_19-235delCAGACAG), 16466935 (c.19-3745_19-3742delTTCT), 16469277 (c.19-6084delT), 16469612 (c.19-6419delT), 16470647 (c.19-7454delG), 16470784 (c.19-7594_19-7591delTTGT), 16471872 (c.19-8679delT), 16472002 (c.19-8812_19-8809delTATA), 16472645 (c.19-9454_19-9452delTTT), 16480450 (c.19-17259_19-17257delTTC), 16480692 (c.19-17500_19-17499delTT), 16480700 (c.19-17508_19-17507delTT), 16480910 (c.19-17717delG), 16482342 (c.19-19149delT), 16482434 (c.19-19241delT), 16482658 (c.19-19465delA), 16484138 (c.19-20947_19-20945delCCT), 16484445 (c.19-21254_19-21252delTTC), 16484653 (c.19-21460delC), 16487314 (c.18+22024_18+22027delTTAA), 16489876 (c.18+19464_18+19465delTA), 16490427 (c.18+18914delT), 16491179 (c.18+18155_18+18162delTAACGTTA), 16492320 (c.18+17014_18+17021delTTTTGTTT), 16495575 (c.18+13766delA), 16496277 (c.18+13061_18+13064delGGAG), 16497606 (c.18+11734_18+11735delTT), 16498376 (c.18+10964_18+10965delAA), 16499457 (c.18+9879_18+9884delAGGAGG), 16500227 (c.18+9113_18+9114delCC), 16500642 (c.18+8699delT), 16502031 (c.18+7309_18+7310delAG), 16503442 (c.18+5892_18+5899delCGTGTGTG), 16504944 (c.18+4395_18+4397delCCA), 16505517 (c.18+3821_18+3824delGTAA), 16506081 (c.18+3258_18+3260delAAG), 16511237 (c.-49-1830delC), 16511533 (c.-49-2126delC), 16511967 (c.-49-2560delA), 16514015 (c.-49-4608delT), 16514404 (c.-49-4999_-49-4997delTTT), 16515429 (c.-50+4571delA), 16515784 (c.-50+4216delG), 16516696 (c.-50+3303_-50+3304delAT), -1kb 16224068 (c.5699_5704delAGAGTG), 16227787 (c.1984_1985delTT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	2
non-synonymous num	0
synonymous substitutions	16440376 (p.Lys87Lys), 16463087 (p.Thr42Thr),
non-synonymous substitutions
B6 transcript (ENSMUST00000162435)	MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTV GNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLV FEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL KKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSER GMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENK GWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFF SVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQAA LSALKQFSEQGLESIDGAVNVEKGSLEKQAKHLREKADNNQAKPASISQDCKKSKSAI*
MSMv4 transcript	MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTV GNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLV FEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL KKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSER GMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENK GWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHRVTSGTTLSYLSPKDMNQPSSSFF SVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSPCSSVQPSKQLEYLARIQGFQAA LSALKQFSEQGLESIDGAVNVEKGSLEKQAKHLREKADNNQAKPASISQDCKKSKSAI*
homology	100.00 (539 / 539)

Exon Detail Report

Gene Symbol (Gene ID)	Stau2 (ENSMUSG00000025920)
Transcript ID	ENSMUST00000162435


..........CAATATAATAGACTTGCAATGTCACAGAAGAGGGCATCAAGAGAAGAGTG
TGGTCTGCTGGAAGGAATTAGCTTCCCCGGGAGGCATTTTCTGACAGCTTTTTTTTTTAC
ATTTTTTCATAATCTGTTCATTGAGTGAAGAGAGAATAGATTGAAGGCAGAGCGAACGAA
CTTGTGGAAAGAACAGCCATGGAAGGCTTGTTTCCCTGATGTGAAGGGCCTGTAGTCGTT
TGTATCACTGAACACCTGAATGAGGCCTAAGTAGCTAGAAACCATTAATTAAGGGGTGGT
CCCCATTTAAGAAGGAATCCACATATTTGAGAAAACTAGTGGAAGTGAAAAGTGAGAAAG
GCACACGGGAAACATGAGAGACAAACGAAGAGCTTGCCTACACTGTATCACCGGAAACTA
CCATGTCAGGCTCTAGCTAGAGAGCTTTACAGGTATCTCGCCTATACATACAGTATCACG
TTTTTGTCTCTTTAAAAATTGTAAATCAGTGTATAAGGTAATAGATCCACAAATACTGCC
TCATTTGTAGAGTTGGTTTTAAAATATGACTGAAATCACAGGGCTCACAGACATATCCCA
GGCAGACAAGCCATACCAAGGAAACCCCAGGAAGAATAATGCCAGTCAGAATACACTAAT
AGTTCTATTTCTAGACTTCTTTTTCATATGATTTTTGGTGCCACTTATTTAAAATCCATT
GGTCTTAACTAGGCTGACGTTATCTGGCCATACCTAACCCATATCTAAACCAGGACAAAA
GAACAAGTAATTTGAGTTTTTTAGCACTCTTCAAAAACCAAGGATCTAGGACAGTGTTTT
AAGACGATCCTCATTTTTGGCTCTAAAGATTTTTTTTTTTTTGGTACGGGCACACAACTT
TAATATATTTATTATTCATTTTTTCCTGATGAATGATGTGGGCCGTAGAGCAGGTGATGG
GGGCTCGCTTGCGCTGCTTGCTACCCTCCTCCCCCTTCTTCCTCCTCCAG
TCTAGAAAGGTGCAGGATCCGCCGAATCCTACGTCGCACCGCAGTGGAACGGACGCGGGATGGTCGCGCGTCCCCAGCTAGGCAGAGGCGGGCAGTCAGCGAGCCGGGAAAG
GTAGGAGCAGAGCGTCGGGGACAGG..........TTATTTCTTTGTTTTCATTTTCCAG
TTTTGTGGAGCTGTGAGGGATACGGAAGTTTGATCAATATTGTCTTAACATGCTTCAGATAAATCAG
GTGAGTATGATTAAGGCGTGTCTTA..........GTTTTCTCTATCTGGTCTTTCCAAG
ATGTTTTCGGTGCAGCTGAGTCTTGGCGAGCAGACATGGGAATCCGAAGGGAGCAGTATAAAGAAGGCCCAACAAGCTGTTGCTAACAAAGCTTTGACTGAATCTACCCTTCCCAAACCAGTTCAGAAACCACCTAAAAGTAATGTCAATAATAACCCAG
GTATGGCATTGGTTTGTTTCCTTCC..........GTGTATCTCTAATGTTTTTAAACAG
GTAGTATAACTCCAACTGTGGAACTGAATGGGCTCGCTATGAAAAGGGGAGAGCCTGCCATCTACAGGCCACTAGATCCAAAACCATTCCCAAATTATAGAGCTAACTACAACTTCCGGGGCATGTACAATCAGAG
GTTTGTATGTCTTCTTTGGTTTTGT..........TAATGCTTGTGCTCTCTTTCTATAG
GTATCATTGCCCAATGCCCAAGATCTTTTATGTTCAGTTAACTGTAGGAAATAATGAATTCTTTGGTGAAGGGAAGACTCGACAAGCTGCCAGACACAATGCTGCGATGAAAGCGCTTCAAGCCCTACAGAATGAGCCAATTCCAGAAAAGTCTCCCCAG
GTGTGGCCCTGATGAGTGCGGCATT..........TTTTTTGCTTTTTGTTTTTACTTAG
AATGGTGAATCAGGAAAAGAAATGGATGACGATAAAGATGCAAATAAATCTGAAATAAGCTTAGTGTTTGAGATTGCGCTGAAGAGAAATATGCCTGTCAGTTTTGAG
GTATGTGTTCCTGTGCTTCTCTTTG..........TTAATATTTTGCTTGCATTTAATAG
GTTATTAAAGAAAGTGGACCACCACATATGAAGAGTTTTGTAACTCGGGTGTCAGTGGGAGAATTTTCTGCAGAAGGAGAGGGAAATAGCAAAAAACTCTCCAAGAAGCGTGCCGCAACCACTGTCTTACAGGAGCTTAAAAAACTCCCACCTCTTCCTGTGGTAGAGAAGCCAAAACTATTTTTTAAAAAACGCCCTAAAACAATAGTAAAG
GTAAGCATATACTTGTGACTATCCA..........TTCTGACGCTTTTCTTATGTTTTAG
GCTGGACCCGACTATGGTCAAGGAATGAACCCCATTAGCCGCCTGGCTCAGATCCAGCAAGCCAGAAAGGAAAAGGAGCCTGATTACATCCTACTCTCAGAACGAGGAATGCCTCGCCGTCGAGAGTTCGTAATGCAG
GTATTCTTAATCTTCGTACTAAATG..........TCATGAATTTCTTTAACCTCAATAG
GTCAAGGTAGGCAATGAAGTTGCGACTGGAACAGGACCCAATAAAAAGATAGCCAAAAAAAATGCTGCTGAAGCAATGCTGTTACAGCTTGGCTATAAAGCGTCCACCAGTCTTCAGGATCCGCTCGACAAG
GTAAGTGTGGGCCTTAGTGGACATG..........TGTAATAATTGATTTAACCTTTCAG
ACAGGTGAAAACAAAGGATGGAGTGGTCCAAAGCCTGGGTTTCCTGAACCAACAAATAACA
GTAAGTTACTATTTTGTGTGTGTGT..........CAGTGTACCTTTATTTTATTCATAG
CTCCAAAAGGAATTCTTCATCTTTCTCCTGATGTTTATCAAGAGATGGAAGCTAGCCGCCACAGAGTGACCTCTGGCACAACTCTAAGCTACTTATCTCCCAAAGATATGAACCAACCTTCAAGCTCTTTCTTCAGTGTGTCTCCCTCATCAACTAGTTCAGCCACAGTTGCCAGGGAACTCCTTATGAATGGAACATCTCCTACTGCTGAAGCCATAGGTTTAAAAGGAAGTTCTCCTACTTCCCCTTGTTCTTCAGTACAGCCTTCAAAACAACTGGAATATTTAGCAAGGATTCAAGGCTTTCAG
GTATGATTTTAAAGAAAAAAACAAA..........CTTCCCCATTTGTTTTCCCTTTTAG
GCAGCCTTAAGTGCCTTGAAACAGTTTTCTGAACAAGGACTGGAATCAATTGATGGGGCAGTGAATGTTGAAAAGGGTTCTCTTGAAAA
GTGAGTACTTTTGTATCTATACAAA..........TCTTGTTAATGTATTAATCTTTCAG
ACAAGCCAAGCATCTGCGGGAGAAAGCAGACAATAACCAGGCGAAGCCGGCCTCCATCTCTCAGGACTGCAAGAAATCAAAGTCGGCCATCTAGCAGCTCCCAGAACCCACGGCTGCCACTGCGTCCGTATAAACCTGTCAGCACGCACGAGGGTGTCTGTGTTCTAGGAAACGAATGACTAATAGCATTATGAGTCTTATGTGAAGACAACACTATTCTAACACAGGAGATAATGTACTTGGTACTGTTTACTCAACTGGGGGAAAATAAAACTTTGAGCATTTCCCTTGGAACTTGAGATCAGATCATAACTCACTTGCCCAGAGGCAGCAGAAATCTGATCCTACTACTGGAGCTTAAAAATAACAATTAATGAAAAGTGTTAGAAACAAGGCTACAGTTTTAAAATGGCTTGGTTCTGTCCTTGCAATTGCTTTGTCGTGGCAAGTGTGTTGTTCTACTCTCTCTTGTTTGAAACAATGCTTGACAATTCAGAAATTAACCACTGATGTGCTGTGGAATGTGATGCTTGTCCTCATATAGTCTCAGTTTCTCTTTTTATGCAGATATTTGTGACCTTCATCTTGCACATACAACCAAATTATTTTAAGGTGCATAGCACAAAGATGTATGCAAACAACTGTTTTAAATCAGGTCTGATAACTGATTTAAATATAAATAATACTAGGAACAAGTAGTTTCCATATATTTCGGAACTTTTAAAAAGACAAAATGAAACAAAACCGAGCAGTTATGGGTTTTGTTCTATAGGATGCCATCAGCCATCGAGGGGGCGTCTTGCCTCTGCCCATCGCTCCAGGAGTCTACGCTGTCGTGGAAATTGTGCCCACCCCCATCTGTGTGTTGTAGCCACTCACTGTTCACATCGAGTGTCTCTAGTAACTGCCTCTGGACTCGGAACAGTGAGTAGGATCAAAATAAATACTGTACATGGTGGGGAATGGAATGCCTGTTGGAGAAGCTTCTAGCCAATCACGCTCTGGACCAGCATGTTGGAATCCAGCGTGGGGCAAATGCAGTAAAGATTTG
TTCCGTTTCTGTATGAGTTGTTCCTTCAGTCCCTTCCTCCTGCCTTTTAAAATGTCAGCG
TTGTGAAATCTGTGGGGAAGGTCACCACCCAGCCTCACTGTCCTACCCAGTCATGGAATT
AAAAGTGACTGTATCTATGAAACTGCAGGTGGCCTCCTGGGCGACTGGGGCCTAAGGAGG
GCCTGGTCTGGCCAGCTTGTCACCTCATTGTTCAGGCTTTCTCCTTATTGATTTGCAAAC
ATTGCGAAATGAGAAAATACTGTAAGGTCTAACTACTCGGCCCAACCTGACAATAGGAAT
AGAATTATGTAAGATTTCACAAGCAAAACCACTACACATCTCGATCTGGCTGACTCACAC
GCGCGACTGGAGAATAAACAAACAGCGCCATAAGGAAATAACTCCGGGGTTAATGACTCC
CATGTGGGGAAGTCCGGCGGTATTGGGAGGGCTTGGTGCCCTTGGAGGAAGTAAGCTTGG
TTACATAAGGCTGGGTCCCAGTGAAAAGAACAACACGTTTGTAGAGTTGGGGTTCTCAGG
GGTGTTTGGGCACAGTCCTGCTGTGTAATCAAGGACACAGGGGCTCCTAACTCATTCCCT
TGGCAGGATGTGGGCCCTTGATCAGCAAGGACTTGGCCGCCTGAGGCTTCAGCACCTGGG
TGAGGTGAAAGCCCACTTCCTTCAGGGCCTCTGAAGTCATGCACAGTAAACACCGCAATC
TTCTACAACAACAGTGAGCTGGGCAGGTCTGTGGGAAGGTGGCAAGCTCAAGGGACACAA
AAGTCCTCAGTTCTCACCACTCAGGTATCCGAAGCATTTAACCAGGGCTGTCTGGCCAGC
TGAATCATTTCAAAACCCCCAGAGCAGCAGAGATGTCTGGAGACTGGACATTTGCATAAA
TATTGGTCCCTCATCCAATATCCTGCACCTCTACTTCTAGACCTGCCCAGAAAGGCACTG
GTGTAGTTCCTGGAGCAGGGATGCTTCTGTGCAGCTTCTG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Stau2 (ENSMUSG00000025920)
Transcript ID	ENSMUST00000162435

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 539 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........CAATATAATAGACTTGCAATGTCACAGAAGAGGGCATCAAGAGAAGAGTG TGGTCTGCTGGAAGGAATTAGCTTCCCCGGGAGGCATTTTCTGACAGCTTTTTTTTTTAC ATTTTTTCATAATCTGTTCATTGAGTGAAGAGAGAATAGATTGAAGGCAGAGCGAACGAA CTTGTGGAAAGAACAGCCATGGAAGGCTTGTTTCCCTGATGTGAAGGGCCTGTAGTCGTT TGTATCACTGAACACCTGAATGAGGCCTAAGTAGCTAGAAACCATTAATTAAGGGGTGGT CCCCATTTAAGAAGGAATCCACATATTTGAGAAAACTAGTGGAAGTGAAAAGTGAGAAAG GCACACGGGAAACATGAGAGACAAACGAAGAGCTTGCCTACACTGTATCACCGGAAACTA CCATGTCAGGCTCTAGCTAGAGAGCTTTACAGGTATCTCGCCTATACATACAGTATCACG TTTTTGTCTCTTTAAAAATTGTAAATCAGTGTATAAGGTAATAGATCCACAAATACTGCC TCATTTGTAGAGTTGGTTTTAAAATATGACTGAAATCACAGGGCTCACAGACATATCCCA GGCAGACAAGCCATACCAAGGAAACCCCAGGAAGAATAATGCCAGTCAGAATACACTAAT AGTTCTATTTCTAGACTTCTTTTTCATATGATTTTTGGTGCCACTTATTTAAAATCCATT GGTCTTAACTAGGCTGACGTTATCTGGCCATACCTAACCCATATCTAAACCAGGACAAAA GAACAAGTAATTTGAGTTTTTTAGCACTCTTCAAAAACCAAGGATCTAGGACAGTGTTTT AAGACGATCCTCATTTTTGGCTCTAAAGATTTTTTTTTTTTTGGTACGGGCACACAACTT TAATATATTTATTATTCATTTTTTCCTGATGAATGATGTGGGCCGTAGAGCAGGTGATGG GGGCTCGCTTGCGCTGCTTGCTACCCTCCTCCCCCTTCTTCCTCCTCCAG
1	EXON 1	16,520,001	16,520,112	-	-	112	TCTAGAAAGGTGCAGGATCCGCCGAATCCTACGTCGCACCGCAGTGGAACGGACGCGGGA TGGTCGCGCGTCCCCAGCTAGGCAGAGGCGGGCAGTCAGCGAGCCGGGAAAG
	INTRON 1 - 2	16,509,409	16,520,000			10,592	GTAGGAGCAGAGCGTCGGGGACAGG..........TTATTTCTTTGTTTTCATTTTCCAG
2	EXON 2	16,509,342	16,509,408	-	0	67	TTTTGTGGAGCTGTGAGGGATACGGAAGTTTGATCAATATTGTCTTAACATGCTTCAGAT AAATCAG
	INTRON 2 - 3	16,463,195	16,509,341			46,147	GTGAGTATGATTAAGGCGTGTCTTA..........GTTTTCTCTATCTGGTCTTTCCAAG
3	EXON 3	16,463,035	16,463,194	0	1	160	ATGTTTTCGGTGCAGCTGAGTCTTGGCGAGCAGACATGGGAATCCGAAGGGAGCAGTATA AAGAAGGCCCAACAAGCTGTTGCTAACAAAGCTTTGACTGAATCTACCCTTCCCAAACCA GTTCAGAAACCACCTAAAAGTAATGTCAATAATAACCCAG
	INTRON 3 - 4	16,440,459	16,463,034			22,576	GTATGGCATTGGTTTGTTTCCTTCC..........GTGTATCTCTAATGTTTTTAAACAG
4	EXON 4	16,440,323	16,440,458	1	2	136	GTAGTATAACTCCAACTGTGGAACTGAATGGGCTCGCTATGAAAAGGGGAGAGCCTGCCA TCTACAGGCCACTAGATCCAAAACCATTCCCAAATTATAGAGCTAACTACAACTTCCGGG GCATGTACAATCAGAG
	INTRON 4 - 5	16,394,211	16,440,322			46,112	GTTTGTATGTCTTCTTTGGTTTTGT..........TAATGCTTGTGCTCTCTTTCTATAG
5	EXON 5	16,394,051	16,394,210	2	0	160	GTATCATTGCCCAATGCCCAAGATCTTTTATGTTCAGTTAACTGTAGGAAATAATGAATT CTTTGGTGAAGGGAAGACTCGACAAGCTGCCAGACACAATGCTGCGATGAAAGCGCTTCA AGCCCTACAGAATGAGCCAATTCCAGAAAAGTCTCCCCAG
	INTRON 5 - 6	16,392,625	16,394,050			1,426	GTGTGGCCCTGATGAGTGCGGCATT..........TTTTTTGCTTTTTGTTTTTACTTAG
6	EXON 6	16,392,517	16,392,624	0	0	108	AATGGTGAATCAGGAAAAGAAATGGATGACGATAAAGATGCAAATAAATCTGAAATAAGC TTAGTGTTTGAGATTGCGCTGAAGAGAAATATGCCTGTCAGTTTTGAG
	INTRON 6 - 7	16,390,034	16,392,516			2,483	GTATGTGTTCCTGTGCTTCTCTTTG..........TTAATATTTTGCTTGCATTTAATAG
7	EXON 7	16,389,821	16,390,033	0	0	213	GTTATTAAAGAAAGTGGACCACCACATATGAAGAGTTTTGTAACTCGGGTGTCAGTGGGA GAATTTTCTGCAGAAGGAGAGGGAAATAGCAAAAAACTCTCCAAGAAGCGTGCCGCAACC ACTGTCTTACAGGAGCTTAAAAAACTCCCACCTCTTCCTGTGGTAGAGAAGCCAAAACTA TTTTTTAAAAAACGCCCTAAAACAATAGTAAAG
	INTRON 7 - 8	16,374,812	16,389,820			15,009	GTAAGCATATACTTGTGACTATCCA..........TTCTGACGCTTTTCTTATGTTTTAG
8	EXON 8	16,374,674	16,374,811	0	0	138	GCTGGACCCGACTATGGTCAAGGAATGAACCCCATTAGCCGCCTGGCTCAGATCCAGCAA GCCAGAAAGGAAAAGGAGCCTGATTACATCCTACTCTCAGAACGAGGAATGCCTCGCCGT CGAGAGTTCGTAATGCAG
	INTRON 8 - 9	16,369,887	16,374,673			4,787	GTATTCTTAATCTTCGTACTAAATG..........TCATGAATTTCTTTAACCTCAATAG
9	EXON 9	16,369,755	16,369,886	0	0	132	GTCAAGGTAGGCAATGAAGTTGCGACTGGAACAGGACCCAATAAAAAGATAGCCAAAAAA AATGCTGCTGAAGCAATGCTGTTACAGCTTGGCTATAAAGCGTCCACCAGTCTTCAGGAT CCGCTCGACAAG
	INTRON 9 - 10	16,366,140	16,369,754			3,615	GTAAGTGTGGGCCTTAGTGGACATG..........TGTAATAATTGATTTAACCTTTCAG
10	EXON 10	16,366,079	16,366,139	0	1	61	ACAGGTGAAAACAAAGGATGGAGTGGTCCAAAGCCTGGGTTTCCTGAACCAACAAATAAC A
	INTRON 10 - 11	16,346,012	16,366,078			20,067	GTAAGTTACTATTTTGTGTGTGTGT..........CAGTGTACCTTTATTTTATTCATAG
11	EXON 11	16,345,704	16,346,011	1	0	308	CTCCAAAAGGAATTCTTCATCTTTCTCCTGATGTTTATCAAGAGATGGAAGCTAGCCGCC ACAGAGTGACCTCTGGCACAACTCTAAGCTACTTATCTCCCAAAGATATGAACCAACCTT CAAGCTCTTTCTTCAGTGTGTCTCCCTCATCAACTAGTTCAGCCACAGTTGCCAGGGAAC TCCTTATGAATGGAACATCTCCTACTGCTGAAGCCATAGGTTTAAAAGGAAGTTCTCCTA CTTCCCCTTGTTCTTCAGTACAGCCTTCAAAACAACTGGAATATTTAGCAAGGATTCAAG GCTTTCAG
	INTRON 11 - 12	16,231,092	16,345,703			114,612	GTATGATTTTAAAGAAAAAAACAAA..........CTTCCCCATTTGTTTTCCCTTTTAG
12	EXON 12	16,231,003	16,231,091	0	2	89	GCAGCCTTAAGTGCCTTGAAACAGTTTTCTGAACAAGGACTGGAATCAATTGATGGGGCA GTGAATGTTGAAAAGGGTTCTCTTGAAAA
	INTRON 12 - 13	16,229,867	16,231,002			1,136	GTGAGTACTTTTGTATCTATACAAA..........TCTTGTTAATGTATTAATCTTTCAG
13	EXON 13	16,228,816	16,229,866	2	-	1,051	ACAAGCCAAGCATCTGCGGGAGAAAGCAGACAATAACCAGGCGAAGCCGGCCTCCATCTC TCAGGACTGCAAGAAATCAAAGTCGGCCATCTAGCAGCTCCCAGAACCCACGGCTGCCAC TGCGTCCGTATAAACCTGTCAGCACGCACGAGGGTGTCTGTGTTCTAGGAAACGAATGAC TAATAGCATTATGAGTCTTATGTGAAGACAACACTATTCTAACACAGGAGATAATGTACT TGGTACTGTTTACTCAACTGGGGGAAAATAAAACTTTGAGCATTTCCCTTGGAACTTGAG ATCAGATCATAACTCACTTGCCCAGAGGCAGCAGAAATCTGATCCTACTACTGGAGCTTA AAAATAACAATTAATGAAAAGTGTTAGAAACAAGGCTACAGTTTTAAAATGGCTTGGTTC TGTCCTTGCAATTGCTTTGTCGTGGCAAGTGTGTTGTTCTACTCTCTCTTGTTTGAAACA ATGCTTGACAATTCAGAAATTAACCACTGATGTGCTGTGGAATGTGATGCTTGTCCTCAT ATAGTCTCAGTTTCTCTTTTTATGCAGATATTTGTGACCTTCATCTTGCACATACAACCA AATTATTTTAAGGTGCATAGCACAAAGATGTATGCAAACAACTGTTTTAAATCAGGTCTG ATAACTGATTTAAATATAAATAATACTAGGAACAAGTAGTTTCCATATATTTCGGAACTT TTAAAAAGACAAAATGAAACAAAACCGAGCAGTTATGGGTTTTGTTCTATAGGATGCCAT CAGCCATCGAGGGGGCGTCTTGCCTCTGCCCATCGCTCCAGGAGTCTACGCTGTCGTGGA AATTGTGCCCACCCCCATCTGTGTGTTGTAGCCACTCACTGTTCACATCGAGTGTCTCTA GTAACTGCCTCTGGACTCGGAACAGTGAGTAGGATCAAAATAAATACTGTACATGGTGGG GAATGGAATGCCTGTTGGAGAAGCTTCTAGCCAATCACGCTCTGGACCAGCATGTTGGAA TCCAGCGTGGGGCAAATGCAGTAAAGATTTG
	3' upstream sequence						TTCCGTTTCTGTATGAGTTGTTCCTTCAGTCCCTTCCTCCTGCCTTTTAAAATGTCAGCG TTGTGAAATCTGTGGGGAAGGTCACCACCCAGCCTCACTGTCCTACCCAGTCATGGAATT AAAAGTGACTGTATCTATGAAACTGCAGGTGGCCTCCTGGGCGACTGGGGCCTAAGGAGG GCCTGGTCTGGCCAGCTTGTCACCTCATTGTTCAGGCTTTCTCCTTATTGATTTGCAAAC ATTGCGAAATGAGAAAATACTGTAAGGTCTAACTACTCGGCCCAACCTGACAATAGGAAT AGAATTATGTAAGATTTCACAAGCAAAACCACTACACATCTCGATCTGGCTGACTCACAC GCGCGACTGGAGAATAAACAAACAGCGCCATAAGGAAATAACTCCGGGGTTAATGACTCC CATGTGGGGAAGTCCGGCGGTATTGGGAGGGCTTGGTGCCCTTGGAGGAAGTAAGCTTGG TTACATAAGGCTGGGTCCCAGTGAAAAGAACAACACGTTTGTAGAGTTGGGGTTCTCAGG GGTGTTTGGGCACAGTCCTGCTGTGTAATCAAGGACACAGGGGCTCCTAACTCATTCCCT TGGCAGGATGTGGGCCCTTGATCAGCAAGGACTTGGCCGCCTGAGGCTTCAGCACCTGGG TGAGGTGAAAGCCCACTTCCTTCAGGGCCTCTGAAGTCATGCACAGTAAACACCGCAATC TTCTACAACAACAGTGAGCTGGGCAGGTCTGTGGGAAGGTGGCAAGCTCAAGGGACACAA AAGTCCTCAGTTCTCACCACTCAGGTATCCGAAGCATTTAACCAGGGCTGTCTGGCCAGC TGAATCATTTCAAAACCCCCAGAGCAGCAGAGATGTCTGGAGACTGGACATTTGCATAAA TATTGGTCCCTCATCCAATATCCTGCACCTCTACTTCTAGACCTGCCCAGAAAGGCACTG GTGTAGTTCCTGGAGCAGGGATGCTTCTGTGCAGCTTCTG..........