MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Nedd9 (ENSMUSG00000021365)

Cross Reference

CCDS	CCDS36640.2
MGI_trans_name	Nedd9-202
RefSeq_mRNA	NM_017464.5
RefSeq_mRNA_predicted	XM_006516874.2
RefSeq_peptide	NP_059492
RefSeq_peptide_predicted	XP_006516937.1
UCSC	uc007qfd.2
UniParc	UPI00000EB368

Definition

protein_id:ENSMUSP00000125773
translation:

MKYKNLMARALYDNVPECAEELAFRKGDILTVIEQNTGGLEGWWLCSLHGRQGIVPGNRV
KLLIGPVQETPGHEQPTPGPMHQTFGQQKLYQVPNSQAASRDTIYQVPPSYQNQGIYQVP
TGHGTPEQDVYQVPPSVQRNIGGTNGPLLSKKVITPVRTGHGYVYEYPSRYQKDVYDVPP
SHSTQGVYDIPPSSVKGPVFSVPVGEIKPQGVYDIPPTQGVYAIPPSACRDEAGLREKEY
DFPPPMKQDGKPDTRPEGVYDIPPTSTKTAGKDLHIKFPCDAPGGVEPMARRHQSFSLHH
APSQLGQSGDTQSDAYDVPRGVQFLEVPTETSEKANPEERDGVYDVPLHNPADAKGSRDV
VDGINRLSFSSTGSTRSNMSTSSTSSKESSLSASPSQDKRLRLDPDTAIEKLYRLQQTLE
MGVCSLMSLVTTDWRCYGYMERHINEIRTAVDKVELFLREYLHFAKGALANASCLPELVL
HNKMKRELQRVEDSHQILSQTSHDLNECSWSLNILAINKPQNKCDDLDRFVMVAKTVPDD
AKQLTTTISTYAETLFRADPANSHLKNGPNSIMNSSEYTHPGSQMQPLHPGDYKAQVHSK
PLPPSLSKDQPPDCGSSDGSERSWMDDYDYVHLQGKEEFERQQKELLEKENIMKQSKAQL
EHHQLSQFQLLEQEITKPVENDISKWKPSQSLPTTNNSVGAQDRQLLCFYYDQCETHFIS
LLNAIDALFSCVSSAQPPRIFVAHSKFVILSAHKLVFIGDTLTRQVAAQDIRNKVRNSSN
QLCEQLKTIVMATKMAALHYPSTTALQEMVHQVTDLSRNAQLFKRSLLEMATF

Chromosome

Length
Position(start - end)

47,202
41,311,661 - 41,358,864

Orient to Chromosome

minus

Link

Location : (13:41311661-41358864)
/

Detail Map

name	Nedd9 (ENSMUSG00000021365)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Nedd9 note : neural precursor cell expressed, developmentally down-regulated gene 9 [Source:MGI Symbol;Acc:MGI:97302]

name	Gm26877 (ENSMUSG00000097373)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm26877 note : predicted gene, 26877 [Source:MGI Symbol;Acc:MGI:5477371]

name	Nedd9 (ENSMUSG00000021365)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000021794

name	Nedd9 (ENSMUSG00000021365)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000163623

name	Nedd9 (ENSMUSG00000021365) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS49247.1 Uniprot/SWISSPROT:O35177 RefSeq_peptide:NP_001104794 RefSeq_mRNA:NM_001111324.2 UCSC:uc007qfe.3 Fantom:5830475M23 Fantom:9130233K18 Fantom:B230374N22 Fantom:C920025A21 Fantom:E230025G09 EMBL:AF009366 EMBL:AK030985 EMBL:AK033729 EMBL:AK046357 EMBL:AK054179 EMBL:AK083374 EMBL:BC004696 EMBL:BC053713 GO:GO:0000922 GO:GO:0005634 GO:GO:0005938 GO:GO:0007067 GO:GO:0007155 GO:GO:0040008 GO:GO:0051301 MGI_trans_name:Nedd9-201 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005737 goslim_goa:GO:0005856 goslim_goa:GO:0007049 goslim_goa:GO:0007067 goslim_goa:GO:0007155 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0051301 protein_id:AAB71663.1 protein_id:AAH04696.1 protein_id:AAH53713.1 protein_id:BAC27203.1 protein_id:BAC28451.1 protein_id:BAC32689.1 protein_id:BAC35682.1 protein_id:BAC38890.1 UniParc:UPI00000EB6A8
definition	note : transcript_id=ENSMUST00000021794 protein_id : ENSMUSP00000021794 translation : MWARNLMARALYDNVPECAEELAFRKGDILTVIEQNTGGLEGWWLCSLHGRQGIVPGNRVKLLIGPVQETPGHEQPTPGPMHQTFGQQKLYQVPNSQAASRDTIYQVPPSYQNQGIYQVPTGHGTPEQDVYQVPPSVQRNIGGTNGPLLSKKVITPVRTGHGYVYEYPSRYQKDVYDVPPSHSTQGVYDIPPSSVKGPVFSVPVGEIKPQGVYDIPPTQGVYAIPPSACRDEAGLREKEYDFPPPMKQDGKPDTRPEGVYDIPPTSTKTAGKDLHIKFPCDAPGGVEPMARRHQSFSLHHAPSQLGQSGDTQSDAYDVPRGVQFLEVPTETSEKANPEERDGVYDVPLHNPADAKGSRDVVDGINRLSFSSTGSTRSNMSTSSTSSKESSLSASPSQDKRLRLDPDTAIEKLYRLQQTLEMGVCSLMSLVTTDWRCYGYMERHINEIRTAVDKVELFLREYLHFAKGALANASCLPELVLHNKMKRELQRVEDSHQILSQTSHDLNECSWSLNILAINKPQNKCDDLDRFVMVAKTVPDDAKQLTTTISTYAETLFRADPANSHLKNGPNSIMNSSEYTHPGSQMQPLHPGDYKAQVHSKPLPPSLSKDQPPDCGSSDGSERSWMDDYDYVHLQGKEEFERQQKELLEKENIMKQSKAQLEHHQLSQFQLLEQEITKPVENDISKWKPSQSLPTTNNSVGAQDRQLLCFYYDQCETHFISLLNAIDALFSCVSSAQPPRIFVAHSKFVILSAHKLVFIGDTLTRQVAAQDIRNKVRNSSNQLCEQLKTIVMATKMAALHYPSTTALQEMVHQVTDLSRNAQLFKRSLLEMATF

name	Nedd9 (ENSMUSG00000021365) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS36640.2 RefSeq_peptide:NP_059492 RefSeq_mRNA:NM_017464.5 RefSeq_mRNA_predicted:XM_006516874.2 RefSeq_peptide_predicted:XP_006516937.1 UCSC:uc007qfd.2 MGI_trans_name:Nedd9-202 UniParc:UPI00000EB368
definition	note : transcript_id=ENSMUST00000163623 protein_id : ENSMUSP00000125773 translation : MKYKNLMARALYDNVPECAEELAFRKGDILTVIEQNTGGLEGWWLCSLHGRQGIVPGNRVKLLIGPVQETPGHEQPTPGPMHQTFGQQKLYQVPNSQAASRDTIYQVPPSYQNQGIYQVPTGHGTPEQDVYQVPPSVQRNIGGTNGPLLSKKVITPVRTGHGYVYEYPSRYQKDVYDVPPSHSTQGVYDIPPSSVKGPVFSVPVGEIKPQGVYDIPPTQGVYAIPPSACRDEAGLREKEYDFPPPMKQDGKPDTRPEGVYDIPPTSTKTAGKDLHIKFPCDAPGGVEPMARRHQSFSLHHAPSQLGQSGDTQSDAYDVPRGVQFLEVPTETSEKANPEERDGVYDVPLHNPADAKGSRDVVDGINRLSFSSTGSTRSNMSTSSTSSKESSLSASPSQDKRLRLDPDTAIEKLYRLQQTLEMGVCSLMSLVTTDWRCYGYMERHINEIRTAVDKVELFLREYLHFAKGALANASCLPELVLHNKMKRELQRVEDSHQILSQTSHDLNECSWSLNILAINKPQNKCDDLDRFVMVAKTVPDDAKQLTTTISTYAETLFRADPANSHLKNGPNSIMNSSEYTHPGSQMQPLHPGDYKAQVHSKPLPPSLSKDQPPDCGSSDGSERSWMDDYDYVHLQGKEEFERQQKELLEKENIMKQSKAQLEHHQLSQFQLLEQEITKPVENDISKWKPSQSLPTTNNSVGAQDRQLLCFYYDQCETHFISLLNAIDALFSCVSSAQPPRIFVAHSKFVILSAHKLVFIGDTLTRQVAAQDIRNKVRNSSNQLCEQLKTIVMATKMAALHYPSTTALQEMVHQVTDLSRNAQLFKRSLLEMATF

name
type	misc_feature
link
xref
definition	note : contig AC167669.1 1..197241(-1)

name	Gm26877 (ENSMUSG00000097373)
type	misc_RNA
link	VEGA Ensembl MGI
xref	UCSC:uc007qff.1 MGI_trans_name:Gm26877-201
definition	note : lincRNA note : transcript_id=ENSMUST00000180728

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Nedd9 (ENSMUSG00000021365)
Transcript ID	ENSMUST00000163623

Reports
substitution
cSNPs	13
Insertion	44
Deletion	45
SNPs	+1kb 41359029(c.-165C>G), 41359270(c.-406A>G), 41359930(c.-1066C>T), 41360036(c.-1172A>G), 41360161(c.-1297G>T), 41360221(c.-1357A>G), 41360309(c.-1445G>A), 41360310(c.-1446T>C), 41360319(c.-1455G>T), 41360345(c.-1481A>G), 41360376(c.-1512C>T), 41360540(c.-1676A>G), 41360551(c.-1687T>G), 41360569(c.-1705A>C), 41360591(c.-1727T>C), 41360633(c.-1769G>C), 41360883(c.-2019T>C), 41360911(c.-2047A>C), 41360915(c.-2051G>A), 41360946(c.-2082T>A), 41360959(c.-2095A>G), 41361018(c.-2154C>T), 41361021(c.-2157A>G), 41361126(c.-2262G>A), 41361137(c.-2273T>C), 41361213(c.-2349G>A), 41361214(c.-2350T>C), 41361246(c.-2382T>A), 41361303(c.-2439C>T), 41361338(c.-2474A>G), 41361448(c.-2584G>A), 41361476(c.-2612T>C), 41361549(c.-2685G>A), 41361575(c.-2711G>A), 41361656(c.-2792T>C), 41361807(c.-2943C>T), 41361953(c.-3089G>A), 41361976(c.-3112C>T), 41362062(c.-3198G>C), 41362120(c.-3256A>G), 41362180(c.-3316T>C), 41362232(c.-3368C>T), 41362270(c.-3406G>A), 41362279(c.-3415G>A), 41362296(c.-3432C>T), 41362324(c.-3460G>A), 41362398(c.-3534T>C), 41362399(c.-3535A>G), 41362410(c.-3546A>G), 41362411(c.-3547A>C), 41362440(c.-3576T>G), 41362476(c.-3612A>C), 41362510(c.-3646C>G), 41362608(c.-3744T>C), 41362625(c.-3761G>T), 41362900(c.-4036T>C), 41362901(c.-4037A>G), 41363155(c.-4291C>T), 41363370(c.-4506G>A), 41363372(c.-4508A>G), 41363403(c.-4539C>T), 41363437(c.-4573A>G), 41363626(c.-4762A>G), 41363774(c.-4910G>T), 41363973(c.-5109T>A), 5'UTR 41358925(c.-61C>T), CDS 41311799(c.2364G>A), 41312081(c.2082C>T), 41314411(c.1947G>A), 41316047(c.1629A>G), 41316133(c.1543T>C), 41316371(c.1305G>A), 41316449(c.1227A>T), 41316738(c.938G>A), 41318477(c.525C>T), 41338631(c.402A>G), 41338820(c.213C>T), 41338943(c.90A>G), 41339009(c.24A>G), 3'UTR 41310043(c.1618C>G), 41310754(c.907A>G), 41311175(c.486C>T), 41311542(c.119C>T), INTRON 41312315(c.1993-145A>G), 41312524(c.1993-354C>T), 41312562(c.1993-392T>A), 41312563(c.1993-393T>A), 41312783(c.1993-613C>T), 41312924(c.1993-754C>A), 41312931(c.1993-761A>G), 41312975(c.1993-805C>T), 41312985(c.1993-815C>T), 41313161(c.1993-991G>A), 41313196(c.1993-1026G>A), 41313207(c.1993-1037T>C), 41313253(c.1993-1083A>T), 41313274(c.1992+1092A>G), 41313408(c.1992+958T>C), 41313412(c.1992+954G>A), 41313456(c.1992+910G>C), 41313458(c.1992+908G>A), 41313467(c.1992+899G>A), 41313470(c.1992+896T>C), 41313508(c.1992+858T>A), 41313509(c.1992+857T>G), 41313529(c.1992+837T>C), 41313572(c.1992+794C>G), 41313587(c.1992+779G>A), 41313756(c.1992+610A>G), 41313920(c.1992+446A>C), 41314248(c.1992+118A>T), 41314543(c.1903-88A>G), 41314620(c.1903-165C>T), 41314887(c.1903-432A>G), 41314937(c.1903-482G>A), 41315003(c.1903-548G>A), 41315025(c.1903-570G>T), 41315162(c.1902+612A>G), 41315349(c.1902+425A>C), 41315360(c.1902+414A>G), 41315366(c.1902+408G>A), 41315368(c.1902+406T>A), 41315405(c.1902+369C>T), 41315450(c.1902+324G>T), 41315455(c.1902+319C>T), 41315539(c.1902+235A>G), 41315549(c.1902+225G>A), 41315558(c.1902+216G>A), 41315624(c.1902+150C>A), 41315666(c.1902+108C>T), 41315699(c.1902+75T>C), 41317023(c.661-8G>T), 41317042(c.661-27A>C), 41317062(c.661-47A>C), 41317187(c.661-172A>G), 41317216(c.661-201A>G), 41317229(c.661-214A>G), 41317332(c.661-317T>A), 41317387(c.661-372T>G), 41317461(c.660+401G>T), 41317635(c.660+227G>A), 41317704(c.660+158A>G), 41317800(c.660+62A>G), 41317811(c.660+51T>G), 41317841(c.660+21C>T), 41318074(c.559-111A>C), 41318108(c.559-145C>T), 41318286(c.558+158T>A), 41318313(c.558+131G>T), 41318585(c.457-40A>G), 41318687(c.457-142T>C), 41319101(c.457-556A>G), 41319127(c.457-582T>G), 41319152(c.457-607C>G), 41319429(c.457-884T>G), 41319524(c.457-979A>G), 41319529(c.457-984A>G), 41319810(c.457-1265G>A), 41319822(c.457-1277A>T), 41319886(c.457-1341A>G), 41319955(c.457-1410T>C), 41319963(c.457-1418C>A), 41320115(c.457-1570T>A), 41320222(c.457-1677A>G), 41320358(c.457-1813T>G), 41320500(c.457-1955T>C), 41320502(c.457-1957G>A), 41320514(c.457-1969C>A), 41320531(c.457-1986A>G), 41320575(c.457-2030A>C), 41320633(c.457-2088T>C), 41320770(c.457-2225T>A), 41320774(c.457-2229G>T), 41320775(c.457-2230T>C), 41320785(c.457-2240G>A), 41320822(c.457-2277A>G), 41320930(c.457-2385C>G), 41321066(c.457-2521C>T), 41322505(c.457-3960G>T), 41322543(c.457-3998T>C), 41322800(c.457-4255A>T), 41323145(c.457-4600T>C), 41323224(c.457-4679T>C), 41323318(c.457-4773A>G), 41323543(c.457-4998C>T), 41323964(c.457-5419G>A), 41324087(c.457-5542G>A), 41324249(c.457-5704G>A), 41324327(c.457-5782G>C), 41324423(c.457-5878C>A), 41324491(c.457-5946G>A), 41324574(c.457-6029A>G), 41324693(c.457-6148G>A), 41324733(c.457-6188T>C), 41324864(c.457-6319T>A), 41324887(c.457-6342G>A), 41325254(c.457-6709G>A), 41325654(c.457-7109C>T), 41326344(c.457-7799C>T), 41326506(c.457-7961A>G), 41326786(c.457-8241A>T), 41326807(c.457-8262G>A), 41327179(c.457-8634G>A), 41327180(c.457-8635G>C), 41327233(c.457-8688C>T), 41327456(c.457-8911T>A), 41327471(c.457-8926A>G), 41327589(c.457-9044T>G), 41327598(c.457-9053A>G), 41327616(c.457-9071G>C), 41327752(c.457-9207T>C), 41327755(c.457-9210A>G), 41327791(c.457-9246A>G), 41327841(c.457-9296G>A), 41327887(c.457-9342G>A), 41327935(c.457-9390A>G), 41328215(c.457-9670T>C), 41328555(c.457-10010A>G), 41329397(c.456+9180G>A), 41329558(c.456+9019C>A), 41329795(c.456+8782C>T), 41329955(c.456+8622T>C), 41330108(c.456+8469C>A), 41330353(c.456+8224A>G), 41330441(c.456+8136G>A), 41330526(c.456+8051G>A), 41330592(c.456+7985T>G), 41330695(c.456+7882T>G), 41330722(c.456+7855C>A), 41330814(c.456+7763G>A), 41330855(c.456+7722G>A), 41330886(c.456+7691C>T), 41330922(c.456+7655G>A), 41331020(c.456+7557A>G), 41331021(c.456+7556C>T), 41331167(c.456+7410A>G), 41331377(c.456+7200C>A), 41331378(c.456+7199A>G), 41331484(c.456+7093A>G), 41331658(c.456+6919C>T), 41331665(c.456+6912C>G), 41331782(c.456+6795C>A), 41331802(c.456+6775A>G), 41332132(c.456+6445G>A), 41332135(c.456+6442T>C), 41332272(c.456+6305G>C), 41332310(c.456+6267G>A), 41332557(c.456+6020A>G), 41332663(c.456+5914T>G), 41332711(c.456+5866A>G), 41333004(c.456+5573T>G), 41333006(c.456+5571G>C), 41333041(c.456+5536A>T), 41333258(c.456+5319T>G), 41333355(c.456+5222T>C), 41333441(c.456+5136C>A), 41333706(c.456+4871G>A), 41333720(c.456+4857A>G), 41333756(c.456+4821G>A), 41333847(c.456+4730A>G), 41333902(c.456+4675A>T), 41334464(c.456+4113G>A), 41334585(c.456+3992T>C), 41334652(c.456+3925A>T), 41334728(c.456+3849A>G), 41334933(c.456+3644G>A), 41335081(c.456+3496G>A), 41335789(c.456+2788A>G), 41335821(c.456+2756C>A), 41335889(c.456+2688G>A), 41335912(c.456+2665G>A), 41335917(c.456+2660A>G), 41335920(c.456+2657C>G), 41335928(c.456+2649A>G), 41335955(c.456+2622C>A), 41335975(c.456+2602G>A), 41336008(c.456+2569A>G), 41336111(c.456+2466A>C), 41336377(c.456+2200T>C), 41336752(c.456+1825G>A), 41336834(c.456+1743T>C), 41336845(c.456+1732G>T), 41337011(c.456+1566G>A), 41337021(c.456+1556G>A), 41337169(c.456+1408G>A), 41337191(c.456+1386A>G), 41337346(c.456+1231A>C), 41337416(c.456+1161G>A), 41337465(c.456+1112C>T), 41337529(c.456+1048G>C), 41337905(c.456+672T>G), 41337916(c.456+661A>G), 41338004(c.456+573A>G), 41338045(c.456+532C>A), 41338161(c.456+416C>T), 41338343(c.456+234T>C), 41338366(c.456+211G>A), 41338370(c.456+207C>T), 41338373(c.456+204A>G), 41338374(c.456+203T>C), 41338500(c.456+77A>C), 41338501(c.456+76A>C), 41338502(c.456+75A>T), 41338539(c.456+38C>T), 41339085(c.13-65T>C), 41339159(c.13-139A>T), 41339160(c.13-140A>G), 41339228(c.13-208A>C), 41339357(c.13-337G>A), 41339541(c.13-521A>C), 41339643(c.13-623A>G), 41339733(c.13-713G>T), 41339743(c.13-723T>C), 41339770(c.13-750A>G), 41339771(c.13-751C>T), 41339801(c.13-781A>G), 41340158(c.13-1138T>C), 41340194(c.13-1174C>T), 41340729(c.13-1709G>C), 41340771(c.13-1751G>A), 41340995(c.13-1975C>T), 41341038(c.13-2018C>A), 41341128(c.13-2108T>C), 41341427(c.13-2407A>G), 41341547(c.13-2527C>T), 41341626(c.13-2606C>T), 41341650(c.13-2630C>A), 41341733(c.13-2713G>A), 41341822(c.13-2802C>T), 41341847(c.13-2827A>G), 41341922(c.13-2902C>A), 41341991(c.13-2971G>A), 41341998(c.13-2978G>A), 41342009(c.13-2989T>C), 41342033(c.13-3013A>G), 41342041(c.13-3021A>G), 41342042(c.13-3022A>C), 41342044(c.13-3024A>C), 41342067(c.13-3047A>G), 41342277(c.13-3257A>G), 41342459(c.13-3439C>A), 41342880(c.13-3860T>C), 41343141(c.13-4121T>G), 41343416(c.13-4396C>T), 41343512(c.13-4492A>G), 41343587(c.13-4567A>G), 41343590(c.13-4570T>G), 41343766(c.13-4746T>C), 41343865(c.13-4845T>C), 41343876(c.13-4856C>A), 41343937(c.13-4917T>C), 41344053(c.13-5033T>C), 41344085(c.13-5065T>C), 41344229(c.13-5209A>G), 41344330(c.13-5310G>A), 41344331(c.13-5311G>A), 41344350(c.13-5330G>A), 41344376(c.13-5356A>G), 41344379(c.13-5359C>T), 41344390(c.13-5370T>G), 41344417(c.13-5397A>T), 41344603(c.13-5583G>A), 41344640(c.13-5620T>G), 41344826(c.13-5806C>T), 41344853(c.13-5833A>T), 41344910(c.13-5890T>C), 41344921(c.13-5901A>C), 41344922(c.13-5902G>A), 41344977(c.13-5957A>G), 41345023(c.13-6003T>C), 41345032(c.13-6012A>G), 41345343(c.13-6323T>C), 41345469(c.13-6449T>C), 41345643(c.13-6623C>T), 41346086(c.13-7066C>A), 41346106(c.13-7086C>T), 41346170(c.13-7150C>T), 41346252(c.13-7232C>T), 41346255(c.13-7235T>C), 41346479(c.13-7459A>G), 41346700(c.13-7680C>T), 41346709(c.13-7689T>C), 41346821(c.13-7801C>G), 41346864(c.13-7844A>G), 41346904(c.13-7884T>C), 41347195(c.13-8175A>G), 41347416(c.13-8396T>C), 41347494(c.13-8474T>C), 41347536(c.13-8516T>C), 41347590(c.13-8570T>G), 41347612(c.13-8592T>C), 41347831(c.13-8811A>G), 41347876(c.13-8856G>A), 41348031(c.13-9011T>C), 41348119(c.13-9099G>A), 41348134(c.13-9114C>T), 41348709(c.13-9689C>T), 41348789(c.13-9769T>G), 41348816(c.13-9796A>G), 41348869(c.13-9849T>C), 41348986(c.12+9867A>C), 41349028(c.12+9825C>T), 41349052(c.12+9801T>G), 41349102(c.12+9751A>C), 41349391(c.12+9462C>T), 41349403(c.12+9450G>A), 41349555(c.12+9298G>A), 41349735(c.12+9118T>C), 41349742(c.12+9111A>G), 41349798(c.12+9055A>T), 41349839(c.12+9014A>G), 41349932(c.12+8921A>G), 41349945(c.12+8908G>C), 41350161(c.12+8692T>C), 41350203(c.12+8650A>C), 41350449(c.12+8404C>T), 41350499(c.12+8354C>T), 41350539(c.12+8314C>T), 41350546(c.12+8307A>G), 41350611(c.12+8242T>C), 41350636(c.12+8217C>T), 41350894(c.12+7959G>C), 41350954(c.12+7899G>A), 41351035(c.12+7818C>T), 41351426(c.12+7427C>T), 41351427(c.12+7426C>T), 41351548(c.12+7305G>A), 41351629(c.12+7224T>C), 41351674(c.12+7179A>G), 41351682(c.12+7171G>A), 41351820(c.12+7033A>C), 41351830(c.12+7023G>A), 41351908(c.12+6945A>G), 41352033(c.12+6820T>C), 41352093(c.12+6760G>A), 41352109(c.12+6744T>C), 41352118(c.12+6735G>A), 41352241(c.12+6612G>A), 41352319(c.12+6534A>G), 41352855(c.12+5998T>C), 41352856(c.12+5997G>A), 41352859(c.12+5994C>T), 41352929(c.12+5924A>G), 41352942(c.12+5911T>C), 41352975(c.12+5878T>C), 41352976(c.12+5877G>A), 41353016(c.12+5837G>T), 41353047(c.12+5806A>G), 41353150(c.12+5703C>A), 41353206(c.12+5647G>C), 41353236(c.12+5617G>A), 41353312(c.12+5541C>A), 41353629(c.12+5224C>T), 41353652(c.12+5201G>A), 41353851(c.12+5002A>G), 41353961(c.12+4892A>G), 41353962(c.12+4891C>T), 41353973(c.12+4880A>G), 41353987(c.12+4866G>A), 41354141(c.12+4712C>T), 41354165(c.12+4688A>C), 41354203(c.12+4650G>T), 41354204(c.12+4649T>C), 41354292(c.12+4561C>T), 41354423(c.12+4430A>T), 41354764(c.12+4089C>T), 41355067(c.12+3786G>C), 41355088(c.12+3765T>C), 41355242(c.12+3611G>A), 41355607(c.12+3246A>G), 41355809(c.12+3044A>G), 41355859(c.12+2994T>C), 41355966(c.12+2887T>C), 41356093(c.12+2760A>G), 41356176(c.12+2677C>A), 41356391(c.12+2462G>A), 41356821(c.12+2032A>G), 41356981(c.12+1872A>G), 41357510(c.12+1343A>G), 41357683(c.12+1170A>C), 41358026(c.12+827T>A), 41358560(c.12+293C>A), 41358624(c.12+229G>T), 41358768(c.12+85G>T), -1kb 41304978(c.6683G>A), 41304979(c.6682C>T), 41305156(c.6505C>T), 41305303(c.6358C>A), 41305357(c.6304G>A), 41305379(c.6282G>A), 41305450(c.6211G>A), 41305470(c.6191C>T), 41305488(c.6173A>T), 41305489(c.6172A>T), 41305524(c.6137T>C), 41305542(c.6119C>T), 41305613(c.6048T>C), 41305722(c.5939C>G), 41305732(c.5929G>A), 41305736(c.5925C>G), 41305886(c.5775A>G), 41305969(c.5692G>A), 41305992(c.5669G>A), 41306111(c.5550G>A), 41306176(c.5485C>G), 41306274(c.5387G>A), 41306404(c.5257T>C), 41306520(c.5141G>A), 41306644(c.5017C>T), 41306741(c.4920T>C), 41306806(c.4855A>G), 41306972(c.4689G>A), 41307148(c.4513C>T), 41307493(c.4168A>G), 41307651(c.4010G>T), 41307706(c.3955G>C), 41307707(c.3954C>A), 41308003(c.3658C>T), 41308157(c.3504T>G), 41308172(c.3489T>C), 41308550(c.3111A>T), 41308600(c.3061T>C), 41308652(c.3009A>G), 41308774(c.2887A>G), 41308840(c.2821G>A), 41308954(c.2707T>C), 41309036(c.2625T>G), 41309210(c.2451T>G), 41309221(c.2440A>T), 41309358(c.2303G>T), 41309412(c.2249G>A), 41309522(c.2139T>C), 41309548(c.2113T>A), 41309744(c.1917C>T), 41309836(c.1825T>G), 41309856(c.1805G>A), 41309900(c.*1761T>C),
Insertions	+1kb 41359443 (c.-582_-580dupGGG), 41359739 (c.-876_-875insT), 41360889 (c.-2026_-2025insAGAGAT), 41361073 (c.-2210_-2209insT), 41361145 (c.-2282_-2281insTT), 41362788 (c.-3925_-3924insTTGGGAC), 41363351 (c.-4488_-4487insA), 41363595 (c.-4733_-4732dupTG), 5'UTR CDS 3'UTR 41310327 (c.1333dupT), INTRON 41312563 (c.1993-394_1993-393insAAA), 41323342 (c.457-4798dupG), 41325681 (c.457-7137dupT), 41327139 (c.457-8595_457-8594insTT), 41327149 (c.457-8605_457-8604insA), 41328397 (c.457-9853_457-9852insTT), 41333223 (c.456+5353_456+5354insT), 41333244 (c.456+5332dupA), 41333521 (c.456+5055_456+5056insA), 41334243 (c.456+4333_456+4334insTG), 41336250 (c.456+2326_456+2327insTCA), 41338502 (c.456+74dupC), 41339574 (c.13-555dupA), 41340660 (c.13-1641_13-1640insGGA), 41340678 (c.13-1659_13-1658insA), 41343498 (c.13-4479_13-4478insCA), 41346864 (c.13-7845_13-7844insT), 41347486 (c.13-8467_13-8466insCGT), 41347724 (c.13-8705_13-8704insACAACT), 41347815 (c.13-8796dupA), 41347822 (c.13-8803dupA), 41347978 (c.13-8959_13-8958insTAATTAAT), 41348614 (c.13-9595dupC), 41350207 (c.12+8644_12+8645dupTT), 41351995 (c.12+6857_12+6858insTCG), 41355329 (c.12+3523_12+3524insT), 41355609 (c.12+3243dupA), 41356830 (c.12+2022_12+2023insTATCT), 41357879 (c.12+973dupT), 41358708 (c.12+144_12+145insAG), -1kb 41304992 (c.6668_6669insTC), 41305036 (c.6624_6625insC), 41305042 (c.6618_6619insTC), 41306122 (c.5538_5539insCTGT), 41307909 (c.3751_*3752insGGT),
Deletions	+1kb 41362041 (c.-3179_-3178delGA), 41362871 (c.-4008delT), 41362877 (c.-4014delT), 41363352 (c.-4493_-4489delTGTAT), 5'UTR CDS 3'UTR 41310908 (c.752delT), INTRON 41315437 (c.1902+336delT), 41317407 (c.661-394_661-393delCA), 41317812 (c.660+47_660+49delGTG), 41318665 (c.457-125_457-121delCTTTT), 41320559 (c.457-2015delA), 41321082 (c.457-2538delA), 41322081 (c.457-3542_457-3537delAAAAAC), 41322349 (c.457-3805delA), 41322433 (c.457-3890_457-3889delAA), 41322439 (c.457-3896_457-3895delAA), 41322786 (c.457-4242delA), 41326848 (c.457-8305_457-8304delGT), 41327139 (c.457-8599_457-8595delTTTTA), 41327897 (c.457-9359_457-9353delGGTGGTT), 41328344 (c.457-9807_457-9800delCAAGTAAA), 41328527 (c.457-9988_457-9983delTCCAGC), 41331747 (c.456+6828_456+6829delTT), 41332539 (c.456+6037delT), 41333668 (c.456+4908delC), 41335581 (c.456+2994_456+2995delCT), 41339171 (c.13-152delT), 41346508 (c.13-7489delA), 41348350 (c.13-9338_13-9331delTCGTCATA), 41351191 (c.12+7661delC), 41351709 (c.12+7139_12+7143delAAAAA), 41351897 (c.12+6955delT), 41353506 (c.12+5339_12+5346delACATACAT), 41353629 (c.12+5218_12+5223delGAAAGT), 41354813 (c.12+4033_12+4039delCTTGTGT), 41356824 (c.12+2025_12+2028delACCA), 41357569 (c.12+1283delT), 41358043 (c.12+808_12+809delTA), 41358845 (c.12+6_12+7delAG), -1kb 41305807 (c.5853delA), 41306007 (c.5652_5653delTT), 41306445 (c.5215delG), 41307230 (c.4427_4430delAAAG), 41307651 (c.4009delA), 41308309 (c.3348_3351delAATA), 41308635 (c.*3025delA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	12
non-synonymous num	1
synonymous substitutions	41311799 (p.Thr788Thr), 41312081 (p.Thr694Thr), 41314411 (p.Lys649Lys), 41316047 (p.Gln543Gln), 41316133 (p.Leu515Leu), 41316371 (p.Arg435Arg), 41316449 (p.Ile409Ile), 41318477 (p.Val175Val), 41338631 (p.Pro134Pro), 41338820 (p.Pro71Pro), 41338943 (p.Leu30Leu), 41339009 (p.Ala8Ala),
non-synonymous substitutions	41316738 (p.Ser313Asn),
B6 transcript (ENSMUST00000163623)	MKYKNLMARALYDNVPECAEELAFRKGDILTVIEQNTGGLEGWWLCSLHGRQGIVPGNRV KLLIGPVQETPGHEQPTPGPMHQTFGQQKLYQVPNSQAASRDTIYQVPPSYQNQGIYQVP TGHGTPEQDVYQVPPSVQRNIGGTNGPLLSKKVITPVRTGHGYVYEYPSRYQKDVYDVPP SHSTQGVYDIPPSSVKGPVFSVPVGEIKPQGVYDIPPTQGVYAIPPSACRDEAGLREKEY DFPPPMKQDGKPDTRPEGVYDIPPTSTKTAGKDLHIKFPCDAPGGVEPMARRHQSFSLHH APSQLGQSGDTQSDAYDVPRGVQFLEVPTETSEKANPEERDGVYDVPLHNPADAKGSRDV VDGINRLSFSSTGSTRSNMSTSSTSSKESSLSASPSQDKRLRLDPDTAIEKLYRLQQTLE MGVCSLMSLVTTDWRCYGYMERHINEIRTAVDKVELFLREYLHFAKGALANASCLPELVL HNKMKRELQRVEDSHQILSQTSHDLNECSWSLNILAINKPQNKCDDLDRFVMVAKTVPDD AKQLTTTISTYAETLFRADPANSHLKNGPNSIMNSSEYTHPGSQMQPLHPGDYKAQVHSK PLPPSLSKDQPPDCGSSDGSERSWMDDYDYVHLQGKEEFERQQKELLEKENIMKQSKAQL EHHQLSQFQLLEQEITKPVENDISKWKPSQSLPTTNNSVGAQDRQLLCFYYDQCETHFIS LLNAIDALFSCVSSAQPPRIFVAHSKFVILSAHKLVFIGDTLTRQVAAQDIRNKVRNSSN QLCEQLKTIVMATKMAALHYPSTTALQEMVHQVTDLSRNAQLFKRSLLEMATF*
MSMv4 transcript	MKYKNLMARALYDNVPECAEELAFRKGDILTVIEQNTGGLEGWWLCSLHGRQGIVPGNRV KLLIGPVQETPGHEQPTPGPMHQTFGQQKLYQVPNSQAASRDTIYQVPPSYQNQGIYQVP TGHGTPEQDVYQVPPSVQRNIGGTNGPLLSKKVITPVRTGHGYVYEYPSRYQKDVYDVPP SHSTQGVYDIPPSSVKGPVFSVPVGEIKPQGVYDIPPTQGVYAIPPSACRDEAGLREKEY DFPPPMKQDGKPDTRPEGVYDIPPTSTKTAGKDLHIKFPCDAPGGVEPMARRHQSFSLHH APSQLGQSGDTQNDAYDVPRGVQFLEVPTETSEKANPEERDGVYDVPLHNPADAKGSRDV VDGINRLSFSSTGSTRSNMSTSSTSSKESSLSASPSQDKRLRLDPDTAIEKLYRLQQTLE MGVCSLMSLVTTDWRCYGYMERHINEIRTAVDKVELFLREYLHFAKGALANASCLPELVL HNKMKRELQRVEDSHQILSQTSHDLNECSWSLNILAINKPQNKCDDLDRFVMVAKTVPDD AKQLTTTISTYAETLFRADPANSHLKNGPNSIMNSSEYTHPGSQMQPLHPGDYKAQVHSK PLPPSLSKDQPPDCGSSDGSERSWMDDYDYVHLQGKEEFERQQKELLEKENIMKQSKAQL EHHQLSQFQLLEQEITKPVENDISKWKPSQSLPTTNNSVGAQDRQLLCFYYDQCETHFIS LLNAIDALFSCVSSAQPPRIFVAHSKFVILSAHKLVFIGDTLTRQVAAQDIRNKVRNSSN QLCEQLKTIVMATKMAALHYPSTTALQEMVHQVTDLSRNAQLFKRSLLEMATF*
homology	99.88 (834 / 834)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Nedd9 (ENSMUSG00000021365)
Transcript ID	ENSMUST00000163623


..........TGTCTTCTCCTGAGTGATTCTCTTTCTCTATAGAAATCTCAGAATGGAAC
CGCTCTACAAATCATGTCCCGTGCTCTGCCTGAAAGAGGCTGTTCTTTTTTTTTTTTTTT
TTTTTTTTTTTAAACCAGGCTTATCAAACAGAAGCGTTCTCCCTGAATAATAAGTGTGAG
TGGGCTAATGGGTCATTTGGGGGAGAGAGGTCAAAAGGAAAAGGCCTCGGTGTTCAAAAG
CGGAATCTGGCAATGCCAGCGGTCAAAGAGGAGAGTGCTGGCTGGACAGGCGTGATGTAT
CGGGTGTGTTCTATAGAACCTGCATGGGTTCCCACCTATCCTTTATCCTCGGAGGTCCTA
GTGAGAAGAACCGGGAAGGCCTGGTGCTTATGAGTGAGTTCCTTTTCATTGAGAAAGAAA
TGTTTTCCAGCTCCTAGCAGACTGACTTAGCAAAGTACTTTGAACACTTGGGGGTGAGGG
GAGCAGCCACAGAAAAGGGAAGGGGAAGAGAAAAGACAGGGAAAGAGAGCTATCAGCAGG
GGTGGTTAGTAAAAAAAAAAGGGGGGGGTACTGGAGACAGAAAACCCTTTGTTCCTCCAG
CTCGTTTCATGTAGAGATTGTAAGGTGAATGGCTTTGAAATGAAATGGGTTTATGAACTA
GTTGCTAGGTCACAGGAAGCGCGATCGTCAGACTGCTTTGTGAATTCGGATTCTTTAAAA
CTTAGGTTACTCTCAAAAGGAGCGTACCTCCTTTGTCTGGTTCCTATGTCTTTCCTCTTT
ATATTTTTATTTCTCCGGGTGGCTGGGGCCGCCTCCCCACTTTCTGTTTTCTCCTCCGCC
CTTTTGATAACGTGAAAAGAAATGATCGTATTACACGCTCTTTGTCGGAGGGTTTCAGAA
GTTAGAGGTGGGCGGGGTGGAGGCGTTACCTTCACCGCCACCAGCAGCCAATGGCGGCGC
GGTATGCAAACGAGGCCCGCGCGGTGCTGGTCTGGATCTGGGCTGTGAGC
TCAGAGACTCCGCAGTGCGCGGGAGGCGAAGGCTTCTCATTTCCATCCAGCCCAGCGCTCAATGGAGGGGCGGACTTTGCAGTGCCTCACTCACTGTGTGATTCGATAGGACCAGGGCTCATCAGATCACCGCCGAGATGAAGTACAAG
GTAAGAGTGCCTTGTACGCCGTCTC..........TGTTCCTCTCTTCTTCCCTTCCCAG
AATCTTATGGCGAGGGCCTTGTATGACAACGTCCCTGAGTGTGCTGAGGAGCTGGCCTTCCGCAAGGGAGACATCTTGACTGTCATAGAGCAGAACACAGGAGGGCTTGAGGGATGGTGGCTGTGTTCCCTCCACGGTCGCCAAGGCATTGTCCCAGGGAACCGGGTGAAGCTTCTGATTGGTCCAGTGCAAGAGACCCCTGGTCATGAGCAGCCTACTCCTGGACCTATGCATCAGACCTTTGGCCAACAGAAACTCTATCAAGTGCCAAATTCCCAGGCAGCATCTCGGGATACCATCTACCAAGTGCCACCCTCCTACCAGAATCAGGGAATTTACCAAGTACCCACTGGCCATGGCACTCCAGAACAAGATGTATATCAAGTACCGCCATCAGTTCAGAGGAACATTGGCGGCACTAATGGACCCCTTCTAAGCAAAAAG
GTAAGTGATGAACTAGAATGTTGTT..........CATCTTTGTGTATTCTTACCCACAG
GTGATCACCCCAGTGAGGACGGGCCATGGCTATGTGTACGAGTACCCATCCAGATACCAAAAGGATGTTTACGATGTCCCTCCTTCCCACAGCACTCAAGGG
GTAGGCAATGGGAACATCACCAGGG..........GGGTAACTTGAGTGTTTCTTTTCAG
GTATATGACATCCCTCCTTCCTCAGTAAAAGGCCCTGTGTTTTCAGTTCCAGTGGGAGAGATAAAACCTCAAGGGGTATATGACATTCCCCCCACCCAAGGG
GTAAGTGAACTGGAAAAACATAGTA..........AATGGCTTTTTACTTACTTTTTTAG
GTCTATGCCATTCCACCATCGGCTTGCCGAGATGAGGCAGGGCTCAGGGAAAAGGAATATGATTTCCCTCCTCCAATGAAGCAAGATGGAAAACCAGACACCAGACCTGAGGGGGTTTATGACATCCCTCCAACCAGCACCAAGACAGCAGGCAAGGACCTTCACATCAAATTCCCCTGTGATGCTCCAGGAGGTGTCGAACCAATGGCACGAAGACACCAGAGCTTTTCCCTGCACCATGCACCCTCTCAGCTGGGACAGTCTGGGGACACTCAGAATGATGCCTATGATGTCCCCCGGGGAGTTCAGTTTCTGGAGGTACCAACAGAAACCAGTGAAAAGGCAAATCCGGAGGAAAGAGACGGTGTCTACGATGTCCCTCTGCACAACCCAGCAGATGCCAAAGGCTCTCGGGACGTGGTAGATGGGATCAACAGACTGTCTTTCTCCAGCACTGGCAGTACCAGGAGTAACATGTCCACCTCTTCCACCTCCTCAAAGGAGTCTTCACTGTCAGCCTCCCCGTCTCAAGACAAAAGGCTCCGACTGGACCCAGACACAGCCATTGAGAAGCTCTATCGGCTCCAGCAGACCCTGGAGATGGGTGTGTGCAGCCTCATGTCACTGGTCACCACAGACTGGAGATGCTACGGATACATGGAAAGGCACATCAATGAGATCCGCACCGCGGTGGACAAAGTAGAGCTGTTCTTACGAGAATACCTCCATTTTGCCAAGGGAGCTTTAGCCAATGCCTCCTGCCTCCCAGAACTGGTCCTCCACAACAAAATGAAGCGGGAACTCCAAAGAGTAGAAGATTCCCACCAGATTCTAAGCCAAACCAGCCATGACTTGAATGAATGCAGCTGGTCCCTGAATATTCTAGCTATCAATAAGCCCCAAAATAAGTGTGATGACCTAGACCGGTTTGTGATGGTCGCCAAGACAGTGCCAGACGACGCCAAACAGCTGACCACCACCATCAGCACCTACGCGGAGACCCTCTTTAGAGCAGATCCTGCCAATTCCCATCTGAAGAATGGGCCCAACAGCATCATGAACTCAAGCGAGTACACACATCCGGGCTCCCAGATGCAGCCACTGCATCCTGGTGACTACAAAGCCCAGGTCCACAGTAAGCCGTTGCCTCCTAGTCTAAGCAAGGACCAGCCACCAGACTGCGGTAGCAGTGACGGTTCTGAGCGGAGTTGGATGGATGATTATGATTATGTTCACCTACAG
GTAAGACCTATAAACCACCCAGACT..........ACTGTCTTTGTTTTGAACACACCAG
GGCAAGGAGGAGTTTGAGCGACAGCAGAAGGAGCTCTTGGAAAAAGAGAACATCATGAAGCAGAGTAAGGCGCAGCTGGAGCATCACCAG
GTAGGTTTGAACACAGCAGACAGCA..........ATGAAACCTGTTCTCTTCCTTTTAG
CTGAGTCAGTTCCAGCTGTTGGAACAAGAGATCACCAAGCCTGTGGAGAATGACATCTCTAAATGGAAGCCCTCTCAGAGCCTCCCAACTACCAACAACAGTGTGGGTGCTCAGGATAGGCAGTTGCTTTGCTTCTACTATGACCAGTGCGAGACCCATTTCATTTCCCTACTCAACGCCATCGACGCCCTCTTCAGCTGCGTCAGCTCAGCCCAACCCCCACGGATCTTTGTGGCGCACAGCAAGTTTGTCATTCTTAGTGCGCACAAACTGGTGTTCATTGGAGACACTCTGACAAGGCAGGTGGCTGCCCAGGACATTCGCAACAAAGTCAGGAACTCCAGCAACCAGCTCTGCGAACAGCTCAAGACAATAGTGATGGCGACCAAAATGGCCGCCCTCCACTACCCCAGTACCACCGCCTTGCAGGAAATGGTGCACCAGGTGACAGACCTGTCCAGAAATGCTCAGCTGTTTAAGCGTTCCTTGCTGGAGATGGCCACCTTTTGAGAAGACAAAGAAGTGGAAGGAACTGGGTGAATAATTACTAAGGAAAACTGGAAATACTATCTAGTTTTTGTAAATGCTATCTATTTTTGTAGATATTTTATATGAAATTGAAATATTTTGATGTTTTTGTGAGTTAGTCGATTTTCATCAATTCAGGGAGCTGAAGCTTGGATTTATTTTGTTTCCCCTGTGTGGTTCTGATATAAACATATAAGTATCTAAGACATAAGTTGTACAGAACTGTGTCCACGTTTGTGTATGCCTACATATCCATATTTGTTTATCTGTGTGTCTGATACAGCCCATTAAAAACATGAATTGAGAAGCACCTTAGTGAGCACCTTCTAATGCTGCATTGTTTGGGTTTTGTAGAAAATTATACCACTTAGTTGTAATATTGCTCTTCATGTAGTAGTAGTCGTCTGAGCCCAGCACACCCAACTTTCTTGTCTGAAACCTCTTTCAAACTTGACTTGTCTTTAACATGGTGGTAAATCTGACCAACTTCTGGTTGAAGGGGGGCAGGGAAAGAAAGAAAGATTCAAAAAATATATTAACCTAAGGTTTCAGGTGCTAGAGAGAGGCAAAACATGTGTGCTGTACTAAGAGGCCATGTCTACAGTAGTTATTGTGTTATTTCAATTCTGAAAGGAACTACAATAAAGAGAGAACACTTGTTTCCCTGGGGCTACATTTGTGAGTGATTCAGTCATGGTTTTCTGAAGGATGTTTTTAGAGTTGAATTTTTTTTTAAAAAAAATTGCAACAGGAATTCATGAAGATACATCAGAACTGTGATTGTGGGCAAAAAGAAGGGCTGTTTCCAACAGGCAGTAGTTAAATCAAGACCTCTCTACCCTCATTCTCTAATGGAAATGGCCAGTTCCTTAGTCACTGAACTGTGGAGCCACCGGGCCCTGTCCTGCTCTCGCATTGCTTGATGGATCCTACACCAGTCTAAAAACTTACATAAGCAGACCAACACTCAAAACAGCTGCCAAGAGCTGACCTTCACGTCCCACTGTGGCTATGGACCTTGTGGATGTCAGCTAGTCACAGCCATGATCGTGTGGTCTGTCCCTTCACACCGGCTGTGTGGATACAGCCCAGGCACCAGATTCATCGTGGGCAGATAAACTACTTCCCTCTTCCTTTATGACCAACTCAAGAAATATAGTAGTCTCTGATCTATTTCATTCCAGCCTACTTGGAAATGTGTTTTTATTTGTTATGGATGTCTTGACTGAGTTAATGTTATTTGTTTTAAACAACCAAATTACAAAGGCAAGGAGGGGCTTAAGAAGGACATGTGATCTCAATGTGATTTTTTTTTAATAAATGGAAGATATCAAAGGAAAGGTGCTTTTCAAAACAAACTATAATTGTAATTCTCAAAGTTCTACATCGCCAGAAGATGAACAGCTGAGCTATTGGAGAGCAATTCACTGTGTCTGGCGTGTGGAAGAAGAGGGTCCTGAAGCATCAGTACCATTGCAGGAAGTCAGGAAGGGTATGCTTGTAGATCTTACTACACAATGTGTATATGTTATGTGATGGCTGCCTTGTCCTAACCTGATTGATGACATTCCACATTGTAAAAACCAAACTATTCAATTTGTACTGTTTATTGCCATCTTGTATATTTAAGCCATTAAATGTTTGGATATTTCTCTTTATAGCCACTGGGTTTCTTTTCCTTGTGTCTCTCTTATCACAGAATTAAATATTGACCCATCTGAGTATAA
AAAGTGAAATTATGACTTTTTTAATGTGTGCTATAGATCTGATTGTTTTTTAAGGAATAA
TATGTGTAGGCTACCCCAGGACCTTGGTATTGAAGAAAATTCTAGAGCATGTGGATGGCA
TCTAACTAAGTATCTGAAATTGTTTTTGTTTTTGTTTTTCAGTATCAAATGTCCACAGAC
AGGAGTTAACTACATAGTTAGTCATAGCTGGCCTGGAACTCTCTATGTAGACCAGACTGG
CAGAAATTGGCCTGTCTCTGCCTCCAGGTTGATTGTAATAAAGATGTGAACCACCACATC
TGGCTACAGCACCCACACATTTAATGTGGGTAGGACAGTTTCTATTTCTACTCTGTGGCT
ATGGCTAATCAAGTAGAGTGGACTTTTTTCAATCACTCTGGAATAGGCATAAAGAAATGG
TTCAACACAAATTATATTAGAAGAAAAAGATTCCTAACCATGAGAATTTACTATGGGCCA
TACTGTGGGCCATACTCCTTTTAATGTCCCTCCCTTTAATTCAGATAACCCTCTGCGATT
TAGAAAGCACTTTGAGTTCTGGAGAGATGGCTCAGTGGTTAAGAGCACGGACTGCTCTTC
CAGAGAACCTGAGTTCAATTCCCAGCAGCCACATTGGTGGCTCACAACCATCTATAATGA
GATCTGAAGATAGCTAGAGTGTACCCATATACATTAAAATATTGTGATTGCCATGAAGTA
TCTTAGAAGCAACAGAGGAGAGATTTCTTCTGACTTGCACTTTAGAGGGGACAGTCTGTC
CATCCTGGAAGGTCTGGATATTGACTTTGTTCCTGGCAGTGGGAGCTTGCAGCATGGCTT
GCTAGCATCTTGTTAGATCAAGAAGCAGATAGAGGGAGGGCTCAGCCAGGCTGCAAGTGG
GGCTAGTTTAATACTCATGAGGCCCACATCCACTCTAGGATCTCTGACTATAGAGCATCC
ACAACCTACCAAAATAATGATGATAGCTGAGACTACAATG..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TGTCTTCTCCTGAGTGATTCTCTTTCTCTATAGAAATCTCAGAATGGAAC CGCTCTACAAATCATGTCCCGTGCTCTGCCTGAAAGAGGCTGTTCTTTTTTTTTTTTTTT TTTTTTTTTTTAAACCAGGCTTATCAAACAGAAGCGTTCTCCCTGAATAATAAGTGTGAG TGGGCTAATGGGTCATTTGGGGGAGAGAGGTCAAAAGGAAAAGGCCTCGGTGTTCAAAAG CGGAATCTGGCAATGCCAGCGGTCAAAGAGGAGAGTGCTGGCTGGACAGGCGTGATGTAT CGGGTGTGTTCTATAGAACCTGCATGGGTTCCCACCTATCCTTTATCCTCGGAGGTCCTA GTGAGAAGAACCGGGAAGGCCTGGTGCTTATGAGTGAGTTCCTTTTCATTGAGAAAGAAA TGTTTTCCAGCTCCTAGCAGACTGACTTAGCAAAGTACTTTGAACACTTGGGGGTGAGGG GAGCAGCCACAGAAAAGGGAAGGGGAAGAGAAAAGACAGGGAAAGAGAGCTATCAGCAGG GGTGGTTAGTAAAAAAAAAAGGGGGGGGTACTGGAGACAGAAAACCCTTTGTTCCTCCAG CTCGTTTCATGTAGAGATTGTAAGGTGAATGGCTTTGAAATGAAATGGGTTTATGAACTA GTTGCTAGGTCACAGGAAGCGCGATCGTCAGACTGCTTTGTGAATTCGGATTCTTTAAAA CTTAGGTTACTCTCAAAAGGAGCGTACCTCCTTTGTCTGGTTCCTATGTCTTTCCTCTTT ATATTTTTATTTCTCCGGGTGGCTGGGGCCGCCTCCCCACTTTCTGTTTTCTCCTCCGCC CTTTTGATAACGTGAAAAGAAATGATCGTATTACACGCTCTTTGTCGGAGGGTTTCAGAA GTTAGAGGTGGGCGGGGTGGAGGCGTTACCTTCACCGCCACCAGCAGCCAATGGCGGCGC GGTATGCAAACGAGGCCCGCGCGGTGCTGGTCTGGATCTGGGCTGTGAGC
1	EXON 1	41,358,853	41,359,001	-	0	149	TCAGAGACTCCGCAGTGCGCGGGAGGCGAAGGCTTCTCATTTCCATCCAGCCCAGCGCTC AATGGAGGGGCGGACTTTGCAGTGCCTCACTCACTGTGTGATTCGATAGGACCAGGGCTC ATCAGATCACCGCCGAGATGAAGTACAAG
	INTRON 1 - 2	41,339,021	41,358,852			19,832	GTAAGAGTGCCTTGTACGCCGTCTC..........TGTTCCTCTCTTCTTCCCTTCCCAG
2	EXON 2	41,338,577	41,339,020	0	0	444	AATCTTATGGCGAGGGCCTTGTATGACAACGTCCCTGAGTGTGCTGAGGAGCTGGCCTTC CGCAAGGGAGACATCTTGACTGTCATAGAGCAGAACACAGGAGGGCTTGAGGGATGGTGG CTGTGTTCCCTCCACGGTCGCCAAGGCATTGTCCCAGGGAACCGGGTGAAGCTTCTGATT GGTCCAGTGCAAGAGACCCCTGGTCATGAGCAGCCTACTCCTGGACCTATGCATCAGACC TTTGGCCAACAGAAACTCTATCAAGTGCCAAATTCCCAGGCAGCATCTCGGGATACCATC TACCAAGTGCCACCCTCCTACCAGAATCAGGGAATTTACCAAGTACCCACTGGCCATGGC ACTCCAGAACAAGATGTATATCAAGTACCGCCATCAGTTCAGAGGAACATTGGCGGCACT AATGGACCCCTTCTAAGCAAAAAG
	INTRON 2 - 3	41,318,546	41,338,576			20,031	GTAAGTGATGAACTAGAATGTTGTT..........CATCTTTGTGTATTCTTACCCACAG
3	EXON 3	41,318,444	41,318,545	0	0	102	GTGATCACCCCAGTGAGGACGGGCCATGGCTATGTGTACGAGTACCCATCCAGATACCAA AAGGATGTTTACGATGTCCCTCCTTCCCACAGCACTCAAGGG
	INTRON 3 - 4	41,317,964	41,318,443			480	GTAGGCAATGGGAACATCACCAGGG..........GGGTAACTTGAGTGTTTCTTTTCAG
4	EXON 4	41,317,862	41,317,963	0	0	102	GTATATGACATCCCTCCTTCCTCAGTAAAAGGCCCTGTGTTTTCAGTTCCAGTGGGAGAG ATAAAACCTCAAGGGGTATATGACATTCCCCCCACCCAAGGG
	INTRON 4 - 5	41,317,016	41,317,861			846	GTAAGTGAACTGGAAAAACATAGTA..........AATGGCTTTTTACTTACTTTTTTAG
5	EXON 5	41,315,774	41,317,015	0	0	1,242	GTCTATGCCATTCCACCATCGGCTTGCCGAGATGAGGCAGGGCTCAGGGAAAAGGAATAT GATTTCCCTCCTCCAATGAAGCAAGATGGAAAACCAGACACCAGACCTGAGGGGGTTTAT GACATCCCTCCAACCAGCACCAAGACAGCAGGCAAGGACCTTCACATCAAATTCCCCTGT GATGCTCCAGGAGGTGTCGAACCAATGGCACGAAGACACCAGAGCTTTTCCCTGCACCAT GCACCCTCTCAGCTGGGACAGTCTGGGGACACTCAGAATGATGCCTATGATGTCCCCCGG GGAGTTCAGTTTCTGGAGGTACCAACAGAAACCAGTGAAAAGGCAAATCCGGAGGAAAGA GACGGTGTCTACGATGTCCCTCTGCACAACCCAGCAGATGCCAAAGGCTCTCGGGACGTG GTAGATGGGATCAACAGACTGTCTTTCTCCAGCACTGGCAGTACCAGGAGTAACATGTCC ACCTCTTCCACCTCCTCAAAGGAGTCTTCACTGTCAGCCTCCCCGTCTCAAGACAAAAGG CTCCGACTGGACCCAGACACAGCCATTGAGAAGCTCTATCGGCTCCAGCAGACCCTGGAG ATGGGTGTGTGCAGCCTCATGTCACTGGTCACCACAGACTGGAGATGCTACGGATACATG GAAAGGCACATCAATGAGATCCGCACCGCGGTGGACAAAGTAGAGCTGTTCTTACGAGAA TACCTCCATTTTGCCAAGGGAGCTTTAGCCAATGCCTCCTGCCTCCCAGAACTGGTCCTC CACAACAAAATGAAGCGGGAACTCCAAAGAGTAGAAGATTCCCACCAGATTCTAAGCCAA ACCAGCCATGACTTGAATGAATGCAGCTGGTCCCTGAATATTCTAGCTATCAATAAGCCC CAAAATAAGTGTGATGACCTAGACCGGTTTGTGATGGTCGCCAAGACAGTGCCAGACGAC GCCAAACAGCTGACCACCACCATCAGCACCTACGCGGAGACCCTCTTTAGAGCAGATCCT GCCAATTCCCATCTGAAGAATGGGCCCAACAGCATCATGAACTCAAGCGAGTACACACAT CCGGGCTCCCAGATGCAGCCACTGCATCCTGGTGACTACAAAGCCCAGGTCCACAGTAAG CCGTTGCCTCCTAGTCTAAGCAAGGACCAGCCACCAGACTGCGGTAGCAGTGACGGTTCT GAGCGGAGTTGGATGGATGATTATGATTATGTTCACCTACAG
	INTRON 5 - 6	41,314,456	41,315,773			1,318	GTAAGACCTATAAACCACCCAGACT..........ACTGTCTTTGTTTTGAACACACCAG
6	EXON 6	41,314,366	41,314,455	0	0	90	GGCAAGGAGGAGTTTGAGCGACAGCAGAAGGAGCTCTTGGAAAAAGAGAACATCATGAAG CAGAGTAAGGCGCAGCTGGAGCATCACCAG
	INTRON 6 - 7	41,312,171	41,314,365			2,195	GTAGGTTTGAACACAGCAGACAGCA..........ATGAAACCTGTTCTCTTCCTTTTAG
7	EXON 7	41,309,916	41,312,170	0	-	2,255	CTGAGTCAGTTCCAGCTGTTGGAACAAGAGATCACCAAGCCTGTGGAGAATGACATCTCT AAATGGAAGCCCTCTCAGAGCCTCCCAACTACCAACAACAGTGTGGGTGCTCAGGATAGG CAGTTGCTTTGCTTCTACTATGACCAGTGCGAGACCCATTTCATTTCCCTACTCAACGCC ATCGACGCCCTCTTCAGCTGCGTCAGCTCAGCCCAACCCCCACGGATCTTTGTGGCGCAC AGCAAGTTTGTCATTCTTAGTGCGCACAAACTGGTGTTCATTGGAGACACTCTGACAAGG CAGGTGGCTGCCCAGGACATTCGCAACAAAGTCAGGAACTCCAGCAACCAGCTCTGCGAA CAGCTCAAGACAATAGTGATGGCGACCAAAATGGCCGCCCTCCACTACCCCAGTACCACC GCCTTGCAGGAAATGGTGCACCAGGTGACAGACCTGTCCAGAAATGCTCAGCTGTTTAAG CGTTCCTTGCTGGAGATGGCCACCTTTTGAGAAGACAAAGAAGTGGAAGGAACTGGGTGA ATAATTACTAAGGAAAACTGGAAATACTATCTAGTTTTTGTAAATGCTATCTATTTTTGT AGATATTTTATATGAAATTGAAATATTTTGATGTTTTTGTGAGTTAGTCGATTTTCATCA ATTCAGGGAGCTGAAGCTTGGATTTATTTTGTTTCCCCTGTGTGGTTCTGATATAAACAT ATAAGTATCTAAGACATAAGTTGTACAGAACTGTGTCCACGTTTGTGTATGCCTACATAT CCATATTTGTTTATCTGTGTGTCTGATACAGCCCATTAAAAACATGAATTGAGAAGCACC TTAGTGAGCACCTTCTAATGCTGCATTGTTTGGGTTTTGTAGAAAATTATACCACTTAGT TGTAATATTGCTCTTCATGTAGTAGTAGTCGTCTGAGCCCAGCACACCCAACTTTCTTGT CTGAAACCTCTTTCAAACTTGACTTGTCTTTAACATGGTGGTAAATCTGACCAACTTCTG GTTGAAGGGGGGCAGGGAAAGAAAGAAAGATTCAAAAAATATATTAACCTAAGGTTTCAG GTGCTAGAGAGAGGCAAAACATGTGTGCTGTACTAAGAGGCCATGTCTACAGTAGTTATT GTGTTATTTCAATTCTGAAAGGAACTACAATAAAGAGAGAACACTTGTTTCCCTGGGGCT ACATTTGTGAGTGATTCAGTCATGGTTTTCTGAAGGATGTTTTTAGAGTTGAATTTTTTT TTAAAAAAAATTGCAACAGGAATTCATGAAGATACATCAGAACTGTGATTGTGGGCAAAA AGAAGGGCTGTTTCCAACAGGCAGTAGTTAAATCAAGACCTCTCTACCCTCATTCTCTAA TGGAAATGGCCAGTTCCTTAGTCACTGAACTGTGGAGCCACCGGGCCCTGTCCTGCTCTC GCATTGCTTGATGGATCCTACACCAGTCTAAAAACTTACATAAGCAGACCAACACTCAAA ACAGCTGCCAAGAGCTGACCTTCACGTCCCACTGTGGCTATGGACCTTGTGGATGTCAGC TAGTCACAGCCATGATCGTGTGGTCTGTCCCTTCACACCGGCTGTGTGGATACAGCCCAG GCACCAGATTCATCGTGGGCAGATAAACTACTTCCCTCTTCCTTTATGACCAACTCAAGA AATATAGTAGTCTCTGATCTATTTCATTCCAGCCTACTTGGAAATGTGTTTTTATTTGTT ATGGATGTCTTGACTGAGTTAATGTTATTTGTTTTAAACAACCAAATTACAAAGGCAAGG AGGGGCTTAAGAAGGACATGTGATCTCAATGTGATTTTTTTTTAATAAATGGAAGATATC AAAGGAAAGGTGCTTTTCAAAACAAACTATAATTGTAATTCTCAAAGTTCTACATCGCCA GAAGATGAACAGCTGAGCTATTGGAGAGCAATTCACTGTGTCTGGCGTGTGGAAGAAGAG GGTCCTGAAGCATCAGTACCATTGCAGGAAGTCAGGAAGGGTATGCTTGTAGATCTTACT ACACAATGTGTATATGTTATGTGATGGCTGCCTTGTCCTAACCTGATTGATGACATTCCA CATTGTAAAAACCAAACTATTCAATTTGTACTGTTTATTGCCATCTTGTATATTTAAGCC ATTAAATGTTTGGATATTTCTCTTTATAGCCACTGGGTTTCTTTTCCTTGTGTCTCTCTT ATCACAGAATTAAATATTGACCCATCTGAGTATAA
	3' upstream sequence						AAAGTGAAATTATGACTTTTTTAATGTGTGCTATAGATCTGATTGTTTTTTAAGGAATAA TATGTGTAGGCTACCCCAGGACCTTGGTATTGAAGAAAATTCTAGAGCATGTGGATGGCA TCTAACTAAGTATCTGAAATTGTTTTTGTTTTTGTTTTTCAGTATCAAATGTCCACAGAC AGGAGTTAACTACATAGTTAGTCATAGCTGGCCTGGAACTCTCTATGTAGACCAGACTGG CAGAAATTGGCCTGTCTCTGCCTCCAGGTTGATTGTAATAAAGATGTGAACCACCACATC TGGCTACAGCACCCACACATTTAATGTGGGTAGGACAGTTTCTATTTCTACTCTGTGGCT ATGGCTAATCAAGTAGAGTGGACTTTTTTCAATCACTCTGGAATAGGCATAAAGAAATGG TTCAACACAAATTATATTAGAAGAAAAAGATTCCTAACCATGAGAATTTACTATGGGCCA TACTGTGGGCCATACTCCTTTTAATGTCCCTCCCTTTAATTCAGATAACCCTCTGCGATT TAGAAAGCACTTTGAGTTCTGGAGAGATGGCTCAGTGGTTAAGAGCACGGACTGCTCTTC CAGAGAACCTGAGTTCAATTCCCAGCAGCCACATTGGTGGCTCACAACCATCTATAATGA GATCTGAAGATAGCTAGAGTGTACCCATATACATTAAAATATTGTGATTGCCATGAAGTA TCTTAGAAGCAACAGAGGAGAGATTTCTTCTGACTTGCACTTTAGAGGGGACAGTCTGTC CATCCTGGAAGGTCTGGATATTGACTTTGTTCCTGGCAGTGGGAGCTTGCAGCATGGCTT GCTAGCATCTTGTTAGATCAAGAAGCAGATAGAGGGAGGGCTCAGCCAGGCTGCAAGTGG GGCTAGTTTAATACTCATGAGGCCCACATCCACTCTAGGATCTCTGACTATAGAGCATCC ACAACCTACCAAAATAATGATGATAGCTGAGACTACAATG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Nedd9 (ENSMUSG00000021365)
Transcript ID	ENSMUST00000163623

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 834 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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