MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Tspan17 (ENSMUSG00000025875)

Cross Reference

EMBL	AC160106, AC162526
GO	GO:0016021, GO:0019899, GO:0072594
goslim_goa	GO:0003674, GO:0005575, GO:0008150, ...show all
MGI_trans_name	Tspan17-006
OTTP	OTTMUSP00000050783
OTTT	OTTMUST00000092047
UCSC	uc007qpl.2
UniParc	UPI0001F78F1C
Uniprot/SPTREMBL	E9QAJ5
Vega_transcript	OTTMUST00000092047, Tspan17-006

Vega_translation

214537, OTTMUSP00000050783

Definition

protein_id:ENSMUSP00000130765
translation:

MPGKHQQFQDPEVGCCGKYFLFGFNIVFWFSVFLGLIFFLELAAGILAFVFKDWIRDQLN
LFINNNVKAYRDDLDLQNLIDFAQEYEDVLNTQCGYDIRLKLELEQQGSIYTKGCVGQFE
KWLQDNLIVVAGVLVGIALLQVQPWLAHPPPA

Chromosome

Length
Position(start - end)

6,522
54,789,595 - 54,796,118

Orient to Chromosome

plus

Link

Location : (13:54789595-54796118)
/

Detail Map

name	Eif4e1b (ENSMUSG00000074895)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Eif4e1b note : eukaryotic translation initiation factor 4E family member 1B [Source:MGI Symbol;Acc:MGI:2685119]

name	Tspan17 (ENSMUSG00000025875)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Tspan17 note : tetraspanin 17 [Source:MGI Symbol;Acc:MGI:1921507]

name	Eif4e1b (ENSMUSG00000074895)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000132728

name	Eif4e1b (ENSMUSG00000074895)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000110003

name	Tspan17 (ENSMUSG00000025875)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000026993

name	Tspan17 (ENSMUSG00000025875)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000131692

name	Tspan17 (ENSMUSG00000025875)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000163796

name	Tspan17 (ENSMUSG00000025875)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000163915

name	Tspan17 (ENSMUSG00000025875)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000099503

name	Tspan17 (ENSMUSG00000025875)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000171859

name	Tspan17 (ENSMUSG00000025875)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000130568

name	Tspan17 (ENSMUSG00000025875)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000145574

name	Tspan17 (ENSMUSG00000025875) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS26536.1 RefSeq_peptide:NP_083117 RefSeq_mRNA:NM_028841.3 Vega_transcript:OTTMUST00000081270 Vega_transcript:Tspan17-001 Uniprot/SPTREMBL:Q3TAQ3 UCSC:uc007qpl.2 Fantom:F830004H06 EMBL:AC160106 EMBL:AC162526 EMBL:AK171691 EMBL:CH467070 GO:GO:0016021 GO:GO:0019899 GO:GO:0072594 MGI_trans_name:Tspan17-001 Vega_translation:214534 Vega_translation:OTTMUSP00000043443 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0019899 protein_id:BAE42615.1 protein_id:EDL01070.1 OTTP:OTTMUSP00000043443 OTTT:OTTMUST00000081270 UniParc:UPI000002271A
definition	note : transcript_id=ENSMUST00000026993 protein_id : ENSMUSP00000026993 translation : MPGKHQQFQDPEVGCCGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGGLDPVWLFVVVGGVMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELAAGILAFVFKDWIRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRDPAEDVLNTQCGYDIRLKLELEQQGSIYTKGCVGQFEKWLQDNLIVVAGVLVGIALLQIFGLCLAQNLVSDIKAVKANW

name	Tspan17 (ENSMUSG00000025875) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide_predicted:XP_006517477.1 Vega_transcript:OTTMUST00000081271 Vega_transcript:Tspan17-002 Uniprot/SPTREMBL:Q3TLW9 UCSC:uc007qpm.2 Fantom:G830027P05 EMBL:AC160106 EMBL:AC162526 EMBL:AK166272 EMBL:CH467070 GO:GO:0016021 GO:GO:0019899 GO:GO:0072594 MGI_trans_name:Tspan17-002 Vega_translation:214535 Vega_translation:OTTMUSP00000043444 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0019899 protein_id:BAE38673.1 protein_id:EDL01068.1 OTTP:OTTMUSP00000043444 OTTT:OTTMUST00000081271 UniParc:UPI00005B222E
definition	note : transcript_id=ENSMUST00000131692 protein_id : ENSMUSP00000115287 translation : MPGKHQQFQDPEVGCCGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGGLDPVWLFVVVGGVMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELAAGILAFVFKDWIRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRDPAEDVLNTQCGYDIRLKLELEQQGSIYTKGCVGQFEKWLQDNLIVVAGVLVGIALLQIFGLCLAQNLVSDIKAVKANWITLGDGYKRLNKQHF

name	Tspan17 (ENSMUSG00000025875) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000092046 Vega_transcript:Tspan17-007 Uniprot/SPTREMBL:E9PWC3 UCSC:uc007qpl.2 EMBL:AC160106 EMBL:AC162526 GO:GO:0016021 GO:GO:0019899 GO:GO:0072594 MGI_trans_name:Tspan17-007 Vega_translation:214536 Vega_translation:OTTMUSP00000050782 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0019899 OTTP:OTTMUSP00000050782 OTTT:OTTMUST00000092046 UniParc:UPI0001F78F1B
definition	note : transcript_id=ENSMUST00000163796 protein_id : ENSMUSP00000131671 translation : MPGKHQQFQDPEVGCCGKYFLFGFNIVFWFSVFLGLIFFLELAAGILAFVFKDWIRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRDPAEDVLNTQCGYDIRLKLELEQQGSIYTKGCVGQFEKWLQDNLIVVAGVLVGIALLQIFGLCLAQNL

name	Tspan17 (ENSMUSG00000025875) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000092047 Vega_transcript:Tspan17-006 Uniprot/SPTREMBL:E9QAJ5 UCSC:uc007qpl.2 EMBL:AC160106 EMBL:AC162526 GO:GO:0016021 GO:GO:0019899 GO:GO:0072594 MGI_trans_name:Tspan17-006 Vega_translation:214537 Vega_translation:OTTMUSP00000050783 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0019899 OTTP:OTTMUSP00000050783 OTTT:OTTMUST00000092047 UniParc:UPI0001F78F1C
definition	note : transcript_id=ENSMUST00000163915 protein_id : ENSMUSP00000130765 translation : MPGKHQQFQDPEVGCCGKYFLFGFNIVFWFSVFLGLIFFLELAAGILAFVFKDWIRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYEDVLNTQCGYDIRLKLELEQQGSIYTKGCVGQFEKWLQDNLIVVAGVLVGIALLQVQPWLAHPPPA

name	Tspan17 (ENSMUSG00000025875) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000092048 Vega_transcript:Tspan17-009 Uniprot/SPTREMBL:E9QN85 UCSC:uc007qpl.2 EMBL:AC160106 EMBL:AC162526 GO:GO:0016021 GO:GO:0019899 GO:GO:0072594 MGI_trans_name:Tspan17-009 Vega_translation:214538 Vega_translation:OTTMUSP00000050784 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0019899 OTTP:OTTMUSP00000050784 OTTT:OTTMUST00000092048 UniParc:UPI0001F78F1D
definition	note : transcript_id=ENSMUST00000099503 protein_id : ENSMUSP00000097102 translation : MPGKHQQFQDPEVGCCGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGGLDPVWLFVVVGGVMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELAAGILAFVFKDWIRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRDPAEDVLNTQCGYDIRLKLVRRELEQQGSIYTKGCVGQFEKWLQDNLIVVAGVLVGIALLQIFGLCLAQNLVSDIKAVKANW

name	Tspan17 (ENSMUSG00000025875) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000092049 Vega_transcript:Tspan17-008 Uniprot/SPTREMBL:F7CRB7 UCSC:uc007qpl.2 GO:GO:0016021 GO:GO:0019899 GO:GO:0072594 MGI_trans_name:Tspan17-008 Vega_translation:214539 Vega_translation:OTTMUSP00000050785 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0019899 OTTP:OTTMUSP00000050785 OTTT:OTTMUST00000092049 UniParc:UPI0001F78F1E
definition	codon_start : 2 note : transcript_id=ENSMUST00000171859 protein_id : ENSMUSP00000128568 translation : XKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGGLDPVWLFVVVGGVMSVLGFAGCIGALRENTFLLKFDWIRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRERCGV

name	Tspan17 (ENSMUSG00000025875) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081274 Vega_transcript:Tspan17-005 Uniprot/SPTREMBL:F6VW20 UCSC:uc007qpl.2 EMBL:AC160106 EMBL:AC162526 GO:GO:0016021 GO:GO:0019899 GO:GO:0072594 MGI_trans_name:Tspan17-005 Vega_translation:214540 Vega_translation:OTTMUSP00000043446 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0019899 OTTP:OTTMUSP00000043446 OTTT:OTTMUST00000081274 UniParc:UPI0001889D0B
definition	note : transcript_id=ENSMUST00000130568 protein_id : ENSMUSP00000123607 translation : GVLSNISALTDLGGLDPVWLFVVVGGVMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELAAGILAFVFKDWIRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRDPAMSSIPSVAMTSDSNWSSSSRAPSTPKAVWASLRSGYKTT

name	Tspan17 (ENSMUSG00000025875) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081272 Vega_transcript:Tspan17-003 Uniprot/SPTREMBL:F6R550 UCSC:uc007qpl.2 GO:GO:0016021 GO:GO:0019899 GO:GO:0072594 MGI_trans_name:Tspan17-003 Vega_translation:214541 Vega_translation:OTTMUSP00000043445 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0019899 OTTP:OTTMUSP00000043445 OTTT:OTTMUST00000081272 UniParc:UPI0001889D0A
definition	codon_start : 2 note : transcript_id=ENSMUST00000145574 protein_id : ENSMUSP00000119687 translation : XFLLKFFSVFLGLIFFLELAAGILAFVFKDWIRDQLNLFINNNVKAYRDDLDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRDPAEDVLNTQCGYDIRLKLELEQQGSIYTKGCVGQFEKWLQDNLIVVAGVLVGIALLQIFGLCLAQNLVSDIKAVKANWSLLSQTSPYSP

name
type	misc_feature
link
xref
definition	note : contig AC162526.3 61529..219418(1)

name
type	misc_feature
link
xref
definition	note : contig AC160106.2 1..152276(-1)

name	Tspan17 (ENSMUSG00000025875)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000081273 Vega_transcript:OTTMUST00000081273 MGI_trans_name:Tspan17-004 OTTT:OTTMUST00000081273
definition	note : retained_intron note : transcript_id=ENSMUST00000139574

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Tspan17 (ENSMUSG00000025875)
Transcript ID	ENSMUST00000163915

Reports
substitution
cSNPs	1
Insertion	3
Deletion	14
SNPs	-1kb 54784633(c.-4962A>T), 54784761(c.-4834G>A), 54784787(c.-4808G>A), 54784863(c.-4732G>A), 54784928(c.-4667G>T), 54785096(c.-4499C>T), 54785193(c.-4402G>A), 54785458(c.-4137G>A), 54785672(c.-3923C>T), 54785766(c.-3829T>C), 54785896(c.-3699G>T), 54786164(c.-3431T>C), 54786368(c.-3227G>T), 54786378(c.-3217T>C), 54786416(c.-3179A>G), 54786424(c.-3171G>A), 54786525(c.-3070G>A), 54786764(c.-2831A>G), 54786835(c.-2760C>T), 54786869(c.-2726T>C), 54786938(c.-2657T>C), 54786971(c.-2624C>T), 54787016(c.-2579A>G), 54787083(c.-2512T>A), 54787109(c.-2486C>T), 54787126(c.-2469T>G), 54787504(c.-2091A>T), 54787637(c.-1958C>T), 54787650(c.-1945C>T), 54787814(c.-1781G>C), 54788010(c.-1585T>C), 54788291(c.-1304A>G), 54788320(c.-1275A>G), 54788542(c.-1053A>G), 54788753(c.-842C>A), 54788754(c.-841T>G), 54788865(c.-730C>T), 54788960(c.-635A>G), 54788990(c.-605G>C), 5'UTR CDS 54793365(c.258C>T), 3'UTR INTRON 54789760(c.87+79C>T), 54789812(c.87+131C>T), 54790004(c.87+323A>G), 54790051(c.87+370C>T), 54790369(c.87+688C>T), 54790400(c.87+719G>T), 54790540(c.87+859T>G), 54790542(c.87+861G>A), 54790546(c.87+865A>G), 54790588(c.87+907G>A), 54790639(c.87+958C>G), 54790677(c.87+996C>T), 54790710(c.87+1029T>C), 54790719(c.87+1038C>A), 54790739(c.87+1058A>G), 54790824(c.87+1143G>A), 54790831(c.87+1150A>G), 54790992(c.87+1311G>T), 54791033(c.87+1352T>C), 54791069(c.87+1388G>A), 54791080(c.87+1399G>A), 54791305(c.87+1624A>C), 54791426(c.87+1745A>G), 54791500(c.88-1695T>C), 54791584(c.88-1611T>C), 54791648(c.88-1547G>A), 54791738(c.88-1457C>T), 54791756(c.88-1439C>T), 54791784(c.88-1411G>C), 54791826(c.88-1369C>G), 54791856(c.88-1339G>A), 54791946(c.88-1249A>G), 54791948(c.88-1247A>G), 54791949(c.88-1246C>T), 54791987(c.88-1208C>T), 54792074(c.88-1121C>T), 54792477(c.88-718T>C), 54792529(c.88-666T>C), 54792537(c.88-658C>T), 54792830(c.88-365T>C), 54793022(c.88-173G>A), 54793051(c.88-144G>A), 54793078(c.88-117A>G), 54793085(c.88-110G>A), 54793100(c.88-95G>T), 54793101(c.88-94A>T), 54793107(c.88-88A>G), 54793372(c.258+7G>A), 54793384(c.258+19C>T), 54793424(c.258+59C>G), 54793498(c.258+133A>G), 54793509(c.258+144G>A), 54793557(c.258+192G>A), 54793803(c.258+438C>A), 54793886(c.258+521C>T), 54793891(c.258+526A>G), 54793897(c.258+532C>T), 54793933(c.258+568T>C), 54794342(c.258+977A>T), 54794343(c.258+978A>C), 54794381(c.258+1016A>G), 54794421(c.259-990G>A), 54794505(c.259-906A>G), 54794522(c.259-889A>T), 54794524(c.259-887A>G), 54794575(c.259-836T>C), 54794777(c.259-634A>G), 54794995(c.259-416G>A), 54795028(c.259-383C>A), 54795046(c.259-365C>A), 54795314(c.259-97G>A), 54795356(c.259-55G>A), 54795366(c.259-45G>A), 54795368(c.259-43T>G), 54795394(c.259-17A>G), 54795619(c.306+161G>A), 54795829(c.307-137C>A), +1kb 54796320(c.202C>T), 54796883(c.765T>C), 54796920(c.802A>G), 54797581(c.1463A>C), 54797669(c.1551A>G), 54797670(c.1552A>G), 54797796(c.1678G>A), 54797833(c.1715T>C), 54797852(c.1734A>G), 54797876(c.1758C>T), 54797877(c.1759T>G), 54797879(c.1761G>A), 54797905(c.1787C>T), 54797913(c.1795G>A), 54797917(c.1799G>A), 54798139(c.2021C>A), 54798168(c.2050T>C), 54798228(c.2110G>A), 54798238(c.2120C>T), 54798321(c.2203G>A), 54798510(c.2392A>G), 54798588(c.2470A>G), 54798642(c.2524A>G), 54798684(c.2566T>C), 54798702(c.2584C>T), 54799299(c.3181A>C), 54799788(c.3670A>G), 54799961(c.3843A>G), 54799994(c.3876A>G), 54800002(c.3884C>T), 54800023(c.3905C>T), 54800040(c.3922C>T), 54800089(c.3971G>C), 54800169(c.4051G>A), 54800193(c.4075G>A), 54800199(c.4081C>T), 54800211(c.4093A>G), 54800265(c.4147C>T), 54800831(c.4713G>A), 54801048(c.4930C>A), 54801050(c.4932T>C), 54801061(c.4943T>G),
Insertions	-1kb 54785978 (c.-3617dupT), 5'UTR CDS 3'UTR INTRON 54792394 (c.88-798dupG), +1kb 54798624 (c.2506_2507insGG),
Deletions	-1kb 54785714 (c.-3880delG), 54787456 (c.-2138_-2131delACTATACT), 54787992 (c.-1602_-1599delTCTC), 54788162 (c.-1432_-1427delTCCCTC), 54788182 (c.-1412_-1411delCC), 54788190 (c.-1404_-1403delCC), 54788613 (c.-981_-977delTGGCA), 54788972 (c.-622_-619delAAAA), 5'UTR CDS 3'UTR INTRON 54790661 (c.87+982_87+985delGAGT), 54791329 (c.87+1653_87+1657delTAGAG), 54791340 (c.87+1660_87+1664delTAGAG), 54792688 (c.88-502_88-498delAGGGG), 54793400 (c.258+36delA), +1kb 54799789 (c.3672_3678delTCCTACA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	0
synonymous substitutions	54793365 (p.Tyr86Tyr),
non-synonymous substitutions
B6 transcript (ENSMUST00000163915)	MPGKHQQFQDPEVGCCGKYFLFGFNIVFWFSVFLGLIFFLELAAGILAFVFKDWIRDQLN LFINNNVKAYRDDLDLQNLIDFAQEYEDVLNTQCGYDIRLKLELEQQGSIYTKGCVGQFE KWLQDNLIVVAGVLVGIALLQVQPWLAHPPPA*
MSMv4 transcript	MPGKHQQFQDPEVGCCGKYFLFGFNIVFWFSVFLGLIFFLELAAGILAFVFKDWIRDQLN LFINNNVKAYRDDLDLQNLIDFAQEYEDVLNTQCGYDIRLKLELEQQGSIYTKGCVGQFE KWLQDNLIVVAGVLVGIALLQVQPWLAHPPPA*
homology	100.00 (153 / 153)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Tspan17 (ENSMUSG00000025875)
Transcript ID	ENSMUST00000163915

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AGGCAAAACAGAACAGGCGTGGCATGGCACGCCAGCCTGTTTGTATTCAA CTACACTGTGTGTGAATGCATGGCACTGTTCATTGGTCCCACTATTCCCAACCACTTATC CCTGGGGAGTGGACTCCTCTGGTTCTTGAATCTTAGACTGGAGATCCAAGGTAATTATTC ACACTTGGCTCACCAGCTTTGCCAGTTGGCTCATCTGGGGCCTCTGGAGGACTTGGGGAA CTTGAGAGAAGCTAACTGGAGGACGGACTTAGAGAGGAGATGGGGACTCTTCAGAGGTGG GGGTTGCAAGGGGTTGAGTGTGACTGGGGTGTAGCCAAAGCCTGGCCCAGAGGCAGGGTC TTGGGGAGAAGTGAGGCCTGTGGACCATAAAAAAAAAAAAAAGACCGATGTCTTGGGCGT GGCTCCAAGAAGGCCGACTGTGGCTCAGAACTGAGGCTGAGTAGGGCGGAGCTCCAGGAG GACTGAGGCCGGTTGGAGGCGGGGTTTGGGGCTCATCAGAGGCGGGACCCGGTTTAGAGG CGGAGCTCGAGAACAGAAGTTAGCTAGGGCAGAGCCTTGGGCGGGGCGTAGGCGGGACTG CGGGAGGACAGCGGCTAGGCATGGGCGGAGCCTGAGAGGATTAAGCCCGGCTGGGGGCGG AGTCGTGGTTATGGGCGGGGCCCGTGAGGACTGAACTTGACTGGGACGGGGTCGTGGGCG GGGCTCCAAGAAGACCGAGCCTTGCTGGGGCGGGGTGTGGACTGACACTGTGGGCGGGGC CGGAGCGCTGTTGGAGGGCGGGGTCGGATGAGGGCACCGCACTCCGGGTGTGGCTGTCCG AGCGCCGTGGGCGGTGCCACAGCGGGCGGGGCAGCCGGTGAGCTGTGTGGCTTTGACCAT GAAGCCGCAGCCACCGGGCTAGGCCCGGGGCTGCTCCAGGCCTGGGCGGCCCGCAGAGGG CTGGGCCGGTCACCGGCTCGGGTTCCCGGGACGGCAGGTGGCCGCTCACC
1	EXON 1	54,789,595	54,789,681	-	0	87	ATGCCCGGCAAGCACCAGCAATTCCAGGACCCTGAGGTCGGCTGCTGCGGGAAATACTTC CTGTTTGGCTTCAACATTGTCTTCTGG
	INTRON 1 - 2	54,789,682	54,793,194			3,513	GTGAGCGCGAGTCCGCTTCTCGCTC..........CATCATCTGTGTGCCCCCAACCCAG
2	EXON 2	54,793,195	54,793,365	0	0	171	TTCTCTGTGTTCCTCGGCCTCATCTTCTTCCTGGAGCTGGCCGCGGGGATCCTGGCCTTC GTCTTCAAGGATTGGATCCGAGACCAACTTAATCTCTTCATCAACAACAATGTCAAAGCC TACCGGGATGATCTCGACCTTCAGAACCTTATCGACTTTGCTCAGGAATAT
	INTRON 2 - 3	54,793,366	54,795,410			2,045	GTGAGTATGGGCCTCATGTGTGTGA..........TTGCTAATGGCCTGTCTCCCCTCAG
3	EXON 3	54,795,411	54,795,458	0	0	48	GAAGATGTCCTCAATACCCAGTGTGGCTATGACATCCGACTCAAACTG
	INTRON 3 - 4	54,795,459	54,795,965			507	GTGAGAAGGGTGGGGACAGGGTTGA..........CGAGCTTGGTCTCGTGTCTCCTCAG
4	EXON 4	54,795,966	54,796,118	0	-	153	GAGCTCGAGCAGCAGGGCTCCATCTACACCAAAGGCTGTGTGGGCCAGTTTGAGAAGTGG CTACAAGACAACCTGATCGTGGTGGCCGGGGTCTTGGTGGGGATCGCCCTCCTCCAGGTA CAGCCTTGGCTTGCCCACCCTCCTCCTGCCTGA
	3' upstream sequence						AGCTCTTTCTTCTTCCTCACCTGCTCTCTGTCTTGCAGATATTTGGCCTCTGCTTGGCCC AGAACCTCGTGAGTGACATCAAGGCGGTGAAGGCCAACTGGTGAGGCTGCCAGGGGTGAT GGCCATGTGCCTGGCCCGTGGGGCTCTAGTGGGGGCCTCCCAGGACACTCTGCCTCGCTC ACAATGGCAAGGCCTGTGGGATGTCTGTTACGACCTGAGCCGGAGGTTTTGTGACCTTGG TGCTCATTACCCACTGAGGAAACCATTGGGGACTAGACTGGGGCTGTTTGCCACAGAGCT CTGTGTCGGGGGTGTGTACCTGTGTGTGTGCATGCACACTCGTAAGTGCACCTGGAGTCT CTACCCTGCTGCTGTGAGGTGGTGGCCCTTCCAGAGCTCGTGGGGGGGGGGCAGATGGAG GGTAGGGCAGGCACCTGTGTCCCCTGGTCTACTGTGGGATGTATCTGTGTGTGGCTTAGG AGCCTGCTGTCTCAGACCTCTCCATACTCACCATGACTTTGAGCCTGCCTGGAGCTTGTC TTGGCCTCAGTGTCACAGCCTCTGAAATGGGTCCAAGAATTCTCTCTCTCGCTTGCCTCT CAGGATCACACTTGGCGATGGCTACAAACGACTCAATAAACAACACTTTGAAAAACAGTG GTGGTTTATGTTCACCGTCTTCGAAGGTTCTGTTGGCAGCGTGGCCTCTACAGAGCTCTC CAGTGAGGAGGACCCTGGCCTGAATCCAACCAAGGCCTCTTAGGCCTGGGTAGACTATGC ATTTGAGACAGCCTTTCAAACGGGTATATTGCCTTAAAGGTCACATCTCCTGTTCCCCCT GGGCAATGGCTGTGTCATCTACAGTGGGACACAGAGGCAGCTCCCCTGGTCTGTTCTATG TACCTGACCGCTAGTATCTGAGAGTTGACCTTTCCAACCTCTGTAGGTTACTCCTGGCAT ACACCTCAATGCTGTTATGTCTCAGCCTCAAGAAAGGCAT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Tspan17 (ENSMUSG00000025875)
Transcript ID	ENSMUST00000163915

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 153 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information