MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Rims1 (ENSMUSG00000041670)

Cross Reference

EMBL	AC117188, AC125522, AC130211, ...show all
GO	GO:0005515, GO:0006461, GO:0007269, ...show all
goslim_goa	GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name	Rims1-206
protein_id	AAH55294.1
Reactome	R-MMU-112310, R-MMU-112315, R-MMU-112316, ...show all
UCSC	uc007alr.1
UniParc	UPI00001B3C7E
Uniprot/SPTREMBL	Q7TPL9

Definition

protein_id:ENSMUSP00000131808
translation:

MAAEMRKMVRQPSRESTDGSINSYSSEGNLIFPGVRVGPDSQFSDFLDGLGPAQLVGRQT
LATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKT
RIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVI
GWYKLFPPSSLVDPTLTPLTRRASQSSLESSSGPPCIRS

Chromosome

Length
Position(start - end)

8,520
22,288,422 - 22,296,943

Orient to Chromosome

minus

Link

Location : (1:22288422-22296943)
/

Detail Map

name	Rims1 (ENSMUSG00000041670)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Rims1 note : regulating synaptic membrane exocytosis 1 [Source:MGI Symbol;Acc:MGI:2152971]

name	Rims1 (ENSMUSG00000041670)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000115273

name	Rims1 (ENSMUSG00000041670)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000081544

name	Rims1 (ENSMUSG00000041670)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000097811

name	Rims1 (ENSMUSG00000041670)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000097810

name	Rims1 (ENSMUSG00000041670)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000097809

name	Rims1 (ENSMUSG00000041670)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000164877

name	Rims1 (ENSMUSG00000041670)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000185942

name	Rims1 (ENSMUSG00000041670) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SPTREMBL:F6Y0S3 EMBL:AC117188 EMBL:AC125522 EMBL:AC130211 EMBL:AC147129 EMBL:AC174648 EMBL:CAAA01049396 EMBL:CAAA01187890 EMBL:CAAA01224532 GO:GO:0005515 GO:GO:0005622 GO:GO:0006461 GO:GO:0006886 GO:GO:0006887 GO:GO:0007269 GO:GO:0014069 GO:GO:0016020 GO:GO:0017137 GO:GO:0042391 GO:GO:0044325 GO:GO:0044822 GO:GO:0045202 GO:GO:0046872 GO:GO:0048169 GO:GO:0048786 GO:GO:0048791 GO:GO:1903861 MGI_trans_name:Rims1-205 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0006461 goslim_goa:GO:0006810 goslim_goa:GO:0007267 goslim_goa:GO:0008150 goslim_goa:GO:0016192 goslim_goa:GO:0019899 goslim_goa:GO:0022607 goslim_goa:GO:0030154 goslim_goa:GO:0043167 goslim_goa:GO:0048856 goslim_goa:GO:0065003 Reactome:R-MMU-112310 Reactome:R-MMU-112315 Reactome:R-MMU-112316 Reactome:R-MMU-181430 Reactome:R-MMU-210500 Reactome:R-MMU-264642 Reactome:R-MMU-888590 UniParc:UPI0000D8ABB5
definition	note : transcript_id=ENSMUST00000115273 protein_id : ENSMUSP00000110928 translation : MSSAVGPRGPRPPTVPPPMQELPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRDMAKPAACKTPRNAESQPHQPPLNIFRCVCVPRKPSSEEGGPDRNWRLHQQFESYKEQVRKIGEEARRYQGEHKDDAPTCGICHKTKFADGCGHLCSYCRTKFCARCGGRVSLRSNNKGKYVMWVCNLCRKQQEILTKSGAWFFGSGPQQPSQDGTLSDTATGAGSEVPREKKARLQERSRSQTPLSTAAVSSQDTASHGAPLDRNKGAEPSQQALGPEQKQASRSRSEPPRERKKAPGLSEQNGKGGQKSERKRVPKSVVQPGEGTADERERKERRETRRLEKGRSQDYPDRLEKREDGRVAEDEKQRKEEEGVSTPEYTSCEDVELESESVSEKGDLDYWLDPATWHSRETSPISSHPVTWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPESSHPPLESSSSSFESQKMERPSISVISPTSPGALKDAPQVLPGQLSVKLWYDKVGHQLIVNVLQATDLPPRVDGRPRNPYVKMYFLPDRSTISLGDQTALFHKTVSYTFNFQKYVIFFETNPFLEKPDLAYYKLSCSTMSFACRKPSGHTEVSVCLTVVQSQRISDSDISDYEVDDGIGVVPPVGYRASARESKATTLTVPEQQRTTHHRSRSVSPHRGDDQGRPRSRLPNVPLQRSLDEIHPTRRSRSPTRHHDASRSLADHRSRHAESQYSSEPDSELLMLPRAKRGRSAECLHMTSELQPSLDRARSASTNCLRPDTSLHSPERERTHRQGSPTQSPPADTSFGSRRGRQLPQVPVRSGSIEQASLVVEERTRQMKMKVHRFKQTTGSGSSQELDHEQYSKYNIHKDQYRSCDNASAKSSDSDVSDVSAISRASSTSRLSSTSFMSEQSERPRGRISSFTPKMQGRRMGTSGRAIIKSTSVSGEIYTLEHNDGSQSDTAVGTVGAGGKKRRSSLSAKVVAIVSRRSRSTSQLSQTESGHKKLKSTIQRSTETGMAAEMRKMVRQPSRESTDGSINSYSSEGNLIFPGVRVGPDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLTPLTRRASQSSLESSSGPPCIRS

name	Rims1 (ENSMUSG00000041670) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SPTREMBL:F6TZK4 EMBL:AC117188 EMBL:AC125522 EMBL:AC130211 EMBL:AC147129 EMBL:AC174648 EMBL:CAAA01049396 EMBL:CAAA01187890 EMBL:CAAA01224532 GO:GO:0005515 GO:GO:0005622 GO:GO:0006461 GO:GO:0006886 GO:GO:0006887 GO:GO:0007269 GO:GO:0014069 GO:GO:0016020 GO:GO:0017137 GO:GO:0042391 GO:GO:0044325 GO:GO:0044822 GO:GO:0045202 GO:GO:0046872 GO:GO:0048169 GO:GO:0048786 GO:GO:0048791 GO:GO:1903861 MGI_trans_name:Rims1-201 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0006461 goslim_goa:GO:0006810 goslim_goa:GO:0007267 goslim_goa:GO:0008150 goslim_goa:GO:0016192 goslim_goa:GO:0019899 goslim_goa:GO:0022607 goslim_goa:GO:0030154 goslim_goa:GO:0043167 goslim_goa:GO:0048856 goslim_goa:GO:0065003 Reactome:R-MMU-112310 Reactome:R-MMU-112315 Reactome:R-MMU-112316 Reactome:R-MMU-181430 Reactome:R-MMU-210500 Reactome:R-MMU-264642 Reactome:R-MMU-888590 UniParc:UPI0000D8ABB6
definition	note : transcript_id=ENSMUST00000081544 protein_id : ENSMUSP00000080259 translation : MSSAVGPRGPRPPTVPPPMQELPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRDMAKPAACKTPRNAESQPHQPPLNIFRCVCVPRKPSSEEGGPDRNWRLHQQFESYKEQVRKIGEEARRYQGEHKDDAPTCGICHKTKFADGCGHLCSYCRTKFCARCGGRVSLRSNNKGKYVMWVCNLCRKQQEILTKSGAWFFGSGPQQPSQDGTLSDTATGAGSEVPREKKARLQERSRSQTPLSTAAVSSQDTASHGAPLDRNKGAEPSQQALGPEQKQASRSRSEPPRERKKAPGLSEQNGKGGQKSERKRVPKSVVQPGEGTADERERKERRETRRLEKGRSQDYPDRLEKREDGRVAEDEKQRKEEEGVSTPEYTSCEDVELESESVSEKGDLDYWLDPATWHSRETSPISSHPVTWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPESSHPPLESSSSSFESQKMERPSISVISPTSPGALKDAPQVLPGQLSVKLWYDKVGHQLIVNVLQATDLPPRVDGRPRNPYVKMYFLPDRSTISLGDQTALFHKTVSYTFNFQKYVIFFETNPFLEKPDLAYYKLSCSTMSFACRKPSGHTEVSVCLTVVQSQRISDSDISDYEVDDGIGVVPPVGYRASARESKATTLTVPEQQRTTHHRSRSVSPHRGDDQGRPRSRLPNVPLQRSLDEIHPTRRSRSPTRHHDASRSLADHRSRHAESQYSSEPDRTHRQGSPTQSPPADTSFGSRRGRQLPQVPVRSGSIEQASLVVEERTRQMKMKVHRFKQTTGSGSSQELDHEQYSKYNIHKDQYRSCDNASAKSSDSDVSDVSAISRASSTSRLSSTSFMSEQSERPRGRISSFTPKMQGRRMGTSGRAIIKSTSVSGEIYTLEHNDGSQSDTAVGTVGAGGKKRRSSLSAKVVAIVSRRSRSTSQLSQTESGHKKLKSTIQRSTETGMAAEMRKMVRQPSRESTDGSINSYSSEGNLIFPGVRVGPDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLTPLTRRASQSSLESSSGPPCIRS

name	Rims1 (ENSMUSG00000041670) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SPTREMBL:F6VBR4 EMBL:AC117188 EMBL:AC125522 EMBL:AC130211 EMBL:AC147129 EMBL:AC174648 EMBL:CAAA01049396 EMBL:CAAA01187890 EMBL:CAAA01224532 GO:GO:0005515 GO:GO:0005622 GO:GO:0006461 GO:GO:0006461 GO:GO:0006886 GO:GO:0006887 GO:GO:0007269 GO:GO:0014069 GO:GO:0016020 GO:GO:0017137 GO:GO:0042391 GO:GO:0044325 GO:GO:0044822 GO:GO:0044822 GO:GO:0045202 GO:GO:0046872 GO:GO:0048169 GO:GO:0048786 GO:GO:0048791 GO:GO:1903861 GO:GO:1903861 MGI_trans_name:Rims1-204 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0006461 goslim_goa:GO:0006810 goslim_goa:GO:0007267 goslim_goa:GO:0008150 goslim_goa:GO:0016192 goslim_goa:GO:0019899 goslim_goa:GO:0022607 goslim_goa:GO:0030154 goslim_goa:GO:0043167 goslim_goa:GO:0048856 goslim_goa:GO:0065003 Reactome:R-MMU-112310 Reactome:R-MMU-112315 Reactome:R-MMU-112316 Reactome:R-MMU-181430 Reactome:R-MMU-210500 Reactome:R-MMU-264642 Reactome:R-MMU-888590 UniParc:UPI0000D8ABB2
definition	note : transcript_id=ENSMUST00000097811 protein_id : ENSMUSP00000095420 translation : MSSAVGPRGPRPPTVPPPMQELPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRDMAKPAACKTPRNAESQPHQPPLNIFRCVCVPRKPSSEEGGPDRNWRLHQQFESYKEQVRKIGEEARRYQGEHKDDAPTCGICHKTKFADGCGHLCSYCRTKFCARCGGRVSLRSNNVSKVVMWVCNLCRKQQEILTKSGAWFFGSGPQQPSQDGTLSDTATGAGSEVPREKKARLQERSRSQTPLSTAAVSSQDTASHGAPLDRNKGAEPSQQALGPEQKQASRSRSEPPRERKKAPGLSEQNGKGGQKSERKRVPKSVVQPGEGTADERERKERRETRRLEKGRSQDYPDRLEKREDGRVAEDEKQRKEEEGVSTPEYTSCEDVELESESVSEKGDLDYWLDPATWHSRETSPISSHPVTWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPESSHPPLESSSSSFESQKMERPSISVISPTSPGALKDAPQVLPGQLSVKLWYDKVGHQLIVNVLQATDLPPRVDGRPRNPYVKMYFLPDRSTISLGDQTALFHKTVSYTFNFQKYVIFFETNPFLEKPDLAYYKLSCSTMSFACRKPSGHTEVSVCLTVVQSQRISDSDISDYEVDDGIGVVPPVGYRASARESKATTLTVPEQQRTTHHRSRSVSPHRGDDQGRPRSRLPNVPLQRSLDEIHPTRRSRSPTRHHDASRSLADHRSRHAESQYSSEPDSELLMLPRAKRGRSAECLHMTSELQPSLDRARSASTNCLRPDTSLHSPERERGRWSPSLARRRPASPRIQIQHASPENDRHSRKSERSSIQKQSRKGTASDADRVLPPCLSRRGYAIPRATDQPVIRGKHTTRSRSSEHSSIRTLCSMHHLAPGGSAPPSPLLTRTHRQGSPTQSPPADTSFGSRRGRQLPQVPVRSGSIEQASLVVEERTRQMKMKVHRFKQTTGSGSSQELDHEQYSKYNIHKDQYRSCDNASAKSSDSDVSDVSAISRASSTSRLSSTSFMSEQSERPRGRISSFTPKMQGRRMGTSGRAIIKSTSVSGEIYTLEHNDGSQSDTAVGTVGAGGKKRRSSLSAKVVAIVSRRSRSTSQLSQTESGHKKLKSTIQRSTETGMAAEMRKMVRQPSRESTDGSINSYSSEGNLIFPGVRVGPDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLTPLTRRASQSSLESSSGPPCIRS

name	Rims1 (ENSMUSG00000041670) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SPTREMBL:F6VBT9 EMBL:AC117188 EMBL:AC125522 EMBL:AC130211 EMBL:AC147129 EMBL:AC174648 EMBL:CAAA01049396 EMBL:CAAA01187890 EMBL:CAAA01224532 GO:GO:0005515 GO:GO:0005622 GO:GO:0006461 GO:GO:0006886 GO:GO:0006887 GO:GO:0007269 GO:GO:0014069 GO:GO:0016020 GO:GO:0017137 GO:GO:0042391 GO:GO:0044325 GO:GO:0044822 GO:GO:0045202 GO:GO:0046872 GO:GO:0048169 GO:GO:0048786 GO:GO:0048791 GO:GO:1903861 MGI_trans_name:Rims1-203 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0006461 goslim_goa:GO:0006810 goslim_goa:GO:0007267 goslim_goa:GO:0008150 goslim_goa:GO:0016192 goslim_goa:GO:0019899 goslim_goa:GO:0022607 goslim_goa:GO:0030154 goslim_goa:GO:0043167 goslim_goa:GO:0048856 goslim_goa:GO:0065003 Reactome:R-MMU-112310 Reactome:R-MMU-112315 Reactome:R-MMU-112316 Reactome:R-MMU-181430 Reactome:R-MMU-210500 Reactome:R-MMU-264642 Reactome:R-MMU-888590 UniParc:UPI0000D8ABB3
definition	note : transcript_id=ENSMUST00000097810 protein_id : ENSMUSP00000095419 translation : MSSAVGPRGPRPPTVPPPMQELPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRDMAKPAACKTPRNAESQPHQPPLNIFRCVCVPRKPSSEEGGPDRNWRLHQQFESYKEQVRKIGEEARRYQGEHKDDAPTCGICHKTKFADGCGHLCSYCRTKFCARCGGRVSLRSNNVSKVVMWVCNLCRKQQEILTKSGAWFFGSGPQQPSQDGTLSDTATGAGSEVPREKKARLQERSRSQTPLSTAAVSSQDTASHGAPLDRNKGAEPSQQALGPEQKQASRSRSEPPRERKKAPGLSEQNGKGGQKSERKRVPKSVVQPGEGTADERERKERRETRRLEKGRSQDYPDRLEKREDGRVAEDEKQRKEEEGVSTPEYTSCEDVELESESVSEKGDLDYWLDPATWHSRETSPISSHPVTWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPESSHPPLESSSSSFESQKMERPSISVISPTSPGALKDAPQVLPGQLSVKLWYDKVGHQLIVNVLQATDLPPRVDGRPRNPYVKMYFLPDRSTISLGDQTALFHKTVSYTFNFQKYVIFFETNPFLEKPDLAYYKLSCSTMSFACRKPSGHTEVSVCLTVVQSQRISDSDISDYEVDDGIGVVPPVGYRASARESKATTLTVPEQQRTTHHRSRSVSPHRGDDQGRPRSRLPNVPLQRSLDEIHPTRRSRSPTRHHDASRSLADHRSRHAESQYSSEPDSELLMLPRAKRGRSAECLHMTSELQPSLDRARSASTNCLRPDTSLHSPERERHSRKSERSSIQKQSRKGTASDADRVLPPCLSRRGYAIPRATDQPVIRGKHTTRSRSSEHSSIRTLCSMHHLAPGGSAPPSPLLTRTHRQGSPTQSPPADTSFGSRRGRQLPQVPVRSGSIEQASLVVEERTRQMKMKVHRFKQTTGSGSSQELDHEQYSKYNIHKDQYRSCDNASAKSSDSDVSDVSAISRASSTSRLSSTSFMSEQSERPRGRISSFTPKMQGRRMGTSGRAIIKSTSVSGEIYTLEHNDGSQSDTAVGTVGAGGKKRRSSLSAKVVAIVSRRSRSTSQLSQTESGHKKLKSTIQRSTETGMAAEMRKMVRQPSRESTDGSINSYSSEGNLIFPGVRVGPDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLTPLTRRASQSSLESSSGPPCIRS

name	Rims1 (ENSMUSG00000041670) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SPTREMBL:F6VBV0 EMBL:AC117188 EMBL:AC125522 EMBL:AC130211 EMBL:AC147129 EMBL:AC174648 EMBL:CAAA01049396 EMBL:CAAA01187890 EMBL:CAAA01224532 GO:GO:0005515 GO:GO:0005622 GO:GO:0006461 GO:GO:0006886 GO:GO:0006887 GO:GO:0007269 GO:GO:0014069 GO:GO:0016020 GO:GO:0017137 GO:GO:0042391 GO:GO:0044325 GO:GO:0044822 GO:GO:0045202 GO:GO:0046872 GO:GO:0048169 GO:GO:0048786 GO:GO:0048791 GO:GO:1903861 MGI_trans_name:Rims1-202 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0006461 goslim_goa:GO:0006810 goslim_goa:GO:0007267 goslim_goa:GO:0008150 goslim_goa:GO:0016192 goslim_goa:GO:0019899 goslim_goa:GO:0022607 goslim_goa:GO:0030154 goslim_goa:GO:0043167 goslim_goa:GO:0048856 goslim_goa:GO:0065003 Reactome:R-MMU-112310 Reactome:R-MMU-112315 Reactome:R-MMU-112316 Reactome:R-MMU-181430 Reactome:R-MMU-210500 Reactome:R-MMU-264642 Reactome:R-MMU-888590 UniParc:UPI0000D8ABB4
definition	note : transcript_id=ENSMUST00000097809 protein_id : ENSMUSP00000095418 translation : MSSAVGPRGPRPPTVPPPMQELPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRDMAKPAACKTPRNAESQPHQPPLNIFRCVCVPRKPSSEEGGPDRNWRLHQQFESYKEQVRKIGEEARRYQGEHKDDAPTCGICHKTKFADGCGHLCSYCRTKFCARCGGRVSLRSNNKGKYVMWVCNLCRKQQEILTKSGAWFFGSGPQQPSQDGTLSDTATGAGSEVPREKKARLQERSRSQTPLSTAAVSSQDTASHGAPLDRNKGAEPSQQALGPEQKQASRSRSEPPRERKKAPGLSEQNGKGGQKSERKRVPKSVVQPGEGTADERERKERRETRRLEKGRSQDYPDRLEKREDGRVAEDEKQRKEEEGVSTPEYTSCEDVELESESVSEKGDLDYWLDPATWHSRETSPISSHPVTWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPESSHPPLESSSSSFESQKMERPSISVISPTSPGALKDAPQVLPGQLSVKLWYDKVGHQLIVNVLQATDLPPRVDGRPRNPYVKMYFLPDRSTISLGDQTALFHKTVSYTFNFQKYVIFFETNPFLEKPDLAYYKLSCSTMSFACRKPSGHTEVSVCLTVVQSQRISDSDISDYEVDDGIGVVPPVGYRASARESKATTLTVPEQQRTTHHRSRSVSPHRGDDQGRPRSRLPNVPLQRSLDEIHPTRRSRSPTRHHDASRSLADHRSRHAESQYSSEPDSELLMLPRAKRGRSAECLHMTSELQPSLDRARSASTNCLRPDTSLHSPERERHSRKSERSSIQKQSRKGTASDADRTHRQGSPTQSPPADTSFGSRRGRQLPQVPVRSGSIEQASLVVEERTRQMKMKVHRFKQTTGSGSSQELDHEQYSKYNIHKDQYRSCDNASAKSSDSDVSDVSAISRASSTSRLSSTSFMSEQSERPRGRISSFTPKMQGRRMGTSGRAIIKSTSVSGEIYTLEHNDGSQSDTAVGTVGAGGKKRRSSLSAKVVAIVSRRSRSTSQLSQTESGHKKLKSTIQRSTETGMAAEMRKMVRQPSRESTDGSINSYSSEGNLIFPGVRVGPDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLTPLTRRASQSSLESSSGPPCIRS

name	Rims1 (ENSMUSG00000041670) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Uniprot/SPTREMBL:Q7TPL9 UCSC:uc007alr.1 EMBL:AC117188 EMBL:AC125522 EMBL:AC130211 EMBL:AC147129 EMBL:AC174648 EMBL:BC055294 EMBL:CAAA01049396 EMBL:CAAA01187890 EMBL:CAAA01224532 GO:GO:0005515 GO:GO:0006461 GO:GO:0007269 GO:GO:0014069 GO:GO:0042391 GO:GO:0044325 GO:GO:0044822 GO:GO:0045202 GO:GO:0048169 GO:GO:0048791 GO:GO:1903861 MGI_trans_name:Rims1-206 goslim_goa:GO:0003674 goslim_goa:GO:0003723 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0006461 goslim_goa:GO:0006810 goslim_goa:GO:0007267 goslim_goa:GO:0008150 goslim_goa:GO:0022607 goslim_goa:GO:0030154 goslim_goa:GO:0048856 goslim_goa:GO:0065003 protein_id:AAH55294.1 Reactome:R-MMU-112310 Reactome:R-MMU-112315 Reactome:R-MMU-112316 Reactome:R-MMU-181430 Reactome:R-MMU-210500 Reactome:R-MMU-264642 Reactome:R-MMU-888590 UniParc:UPI00001B3C7E
definition	note : transcript_id=ENSMUST00000164877 protein_id : ENSMUSP00000131808 translation : MAAEMRKMVRQPSRESTDGSINSYSSEGNLIFPGVRVGPDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLTPLTRRASQSSLESSSGPPCIRS

name	Rims1 (ENSMUSG00000041670) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	RefSeq_peptide:NP_001012641.1 RefSeq_peptide:NP_001012642.1 RefSeq_peptide:NP_444500.1 RefSeq_peptide:NP_898839.2 RefSeq_mRNA:NM_001012623.1 RefSeq_mRNA:NM_001012624.1 RefSeq_mRNA:NM_053270.1 RefSeq_mRNA:NM_183018.2 Vega_transcript:OTTMUST00000120202 Vega_transcript:Rims1-002 Uniprot/SPTREMBL:A0A087WSA4 UCSC:uc029qni.1 GO:GO:0005515 GO:GO:0006461 GO:GO:0006887 GO:GO:0007269 GO:GO:0014069 GO:GO:0016020 GO:GO:0017137 GO:GO:0042391 GO:GO:0044325 GO:GO:0044822 GO:GO:0045202 GO:GO:0048169 GO:GO:0048786 GO:GO:0048791 GO:GO:1903861 MGI_trans_name:Rims1-002 Vega_translation:178830 Vega_translation:OTTMUSP00000066641 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0016192 goslim_goa:GO:0019899 OTTP:OTTMUSP00000066641 OTTT:OTTMUST00000120202 UniParc:UPI0004621193
definition	codon_start : 3 note : transcript_id=ENSMUST00000185942 protein_id : ENSMUSP00000140963 translation : XSQRISDSDISDYEVDDGIGVVPPVGYRASARESKATTLTVPEQQRTTHHRSRSVSPHRGDDQGRPRSRLPNVPLQRSLDEIHPTRRSRSPTRHHDASRSLADHRSRHAESQYSSEPDSELLMLPRAKRGRSAECLHMTSELQPSLDRARSASTNCLRPDTSLHSPERERGRWSPSLARRRPASPRIQIQHASPENDRHSRKSERSSIQKQSRKGTASDADRVLPPCLSRRGYAIPRATDQPVIRGKHTTRSRSSEHSSIRTLCSMHHLAPGGSAPPSPLLTRTHRQGSPTQSPPADTSFGSRRGRQLPQVPVRSGSIEQASLVVEERTRQMKMKVHRFKQTTGSGSSQELDHEQYSKYNIHKDQYRSCDNASAKSSDSDVSDVSAISRASSTSRLSSTSFMSEQSERPRGRISSFTPKMQGRRMGTSGRAIIKSTSVSGEIYTLEHNDGSQSDTAVGTVGAGGKKRRSSLSAKVVAIVSRRSRSTSQLSQTESGHKKLKSTIQRSTETGMAAEMRKMVRQPSRESTDGSINSYSSEGNLIFPGVRVGPDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLTPLTRRASQSSLESSSGPPCIRS

name
type	misc_feature
link
xref
definition	note : contig AC130211.3 52935..182051(1)

name
type	misc_feature
link
xref
definition	note : contig AC125522.4 37331..100480(1)

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Rims1 (ENSMUSG00000041670)
Transcript ID	ENSMUST00000164877

Reports
substitution
cSNPs	0
Insertion	19
Deletion	26
SNPs	+1kb 22315956(c.-19013A>G), 22316066(c.-19123C>G), 22316237(c.-19294A>T), 22316254(c.-19311T>C), 22316257(c.-19314T>C), 22316291(c.-19348T>A), 22316511(c.-19568C>T), 22316574(c.-19631A>G), 22316588(c.-19645A>G), 22316747(c.-19804G>A), 22316752(c.-19809T>C), 22316753(c.-19810G>A), 22316754(c.-19811G>A), 22316855(c.-19912A>T), 22316902(c.-19959G>A), 22316933(c.-19990G>T), 22317001(c.-20058A>G), 22317125(c.-20182A>G), 22317130(c.-20187C>T), 22317136(c.-20193C>T), 22317139(c.-20196A>C), 22317196(c.-20253A>C), 22317477(c.-20534T>C), 22317549(c.-20606A>G), 22317647(c.-20704C>A), 22317755(c.-20812A>G), 22317914(c.-20971C>T), 22318087(c.-21144A>G), 22318148(c.-21205T>C), 22318262(c.-21319G>A), 22318357(c.-21414T>C), 22318407(c.-21464T>C), 22318413(c.-21470T>C), 22318428(c.-21485G>A), 22318451(c.-21508G>C), 22318468(c.-21525G>A), 22318499(c.-21556T>C), 22318509(c.-21566T>A), 22318545(c.-21602T>A), 22318582(c.-21639T>G), 22318616(c.-21673A>G), 22318617(c.-21674C>T), 22318641(c.-21698T>A), 22318647(c.-21704T>A), 22318661(c.-21718A>G), 22318687(c.-21744A>G), 22318699(c.-21756G>T), 22318841(c.-21898A>T), 22318874(c.-21931C>T), 22319082(c.-22139G>A), 22319085(c.-22142T>G), 22319183(c.-22240C>T), 22319292(c.-22349C>T), 22319312(c.-22369A>C), 22319350(c.-22407C>T), 22319529(c.-22586T>C), 22320094(c.-23151G>T), 22320097(c.-23154C>T), 22320115(c.-23172G>A), 22320445(c.-23502C>T), 22320489(c.-23546A>G), 5'UTR CDS 3'UTR 22287287(c.1135T>C), 22287400(c.1022T>C), 22287651(c.771A>C), 22287843(c.579T>C), 22287994(c.428T>G), 22288150(c.272G>A), 22288195(c.227C>T), 22288359(c.63A>G), INTRON 22288741(c.442-101C>A), 22288798(c.442-158A>G), 22288889(c.442-249A>T), 22288950(c.442-310G>A), 22288962(c.442-322T>C), 22289026(c.442-386T>C), 22289041(c.442-401A>T), 22289136(c.442-496A>G), 22289138(c.442-498C>T), 22289167(c.442-527C>A), 22289902(c.441+158G>A), 22290226(c.302-27T>C), 22290287(c.302-88A>G), 22290292(c.302-93C>A), 22290297(c.302-98A>C), 22290344(c.302-145T>G), 22290408(c.302-209T>C), 22290459(c.302-260A>G), 22290530(c.302-331A>G), 22290595(c.302-396T>A), 22290722(c.301+291A>G), 22290775(c.301+238A>C), 22290789(c.301+224G>T), 22290886(c.301+127A>G), 22291221(c.200-107C>A), 22291223(c.200-109T>C), 22291440(c.200-326A>G), 22291450(c.200-336T>C), 22291457(c.200-343A>G), 22291459(c.200-345G>T), 22291522(c.200-408A>G), 22291563(c.200-449G>A), 22291573(c.200-459T>G), 22291710(c.200-596G>C), 22291734(c.200-620A>G), 22291741(c.200-627C>A), 22291783(c.200-669C>T), 22291839(c.200-725T>G), 22291874(c.200-760G>A), 22291929(c.200-815A>G), 22292111(c.199+711T>C), 22292559(c.199+263T>A), 22292604(c.199+218G>C), 22292976(c.87-42T>C), 22292987(c.87-53G>A), 22293015(c.87-81C>T), 22293063(c.87-129C>T), 22293094(c.87-160C>T), 22293120(c.87-186G>A), 22293129(c.87-195T>C), 22293142(c.87-208C>T), 22293352(c.87-418C>G), 22293360(c.87-426T>C), 22293572(c.87-638T>G), 22293781(c.87-847T>C), 22293794(c.87-860G>C), 22293802(c.87-868G>A), 22293827(c.87-893A>C), 22293895(c.87-961C>T), 22293988(c.87-1054A>G), 22294069(c.87-1135G>C), 22294083(c.87-1149C>T), 22294087(c.87-1153A>G), 22294090(c.87-1156C>T), 22294116(c.87-1182A>G), 22294226(c.87-1292G>A), 22294337(c.87-1403A>G), 22294422(c.87-1488A>G), 22294472(c.87-1538G>A), 22294606(c.87-1672G>A), 22294624(c.87-1690G>A), 22294629(c.87-1695G>C), 22294649(c.87-1715T>C), 22294651(c.87-1717C>A), 22294662(c.87-1728G>T), 22294914(c.86+1944T>C), 22297072(c.-53-76C>T), 22297088(c.-53-92A>C), 22297136(c.-53-140T>C), 22297279(c.-53-283T>G), 22297549(c.-53-553A>G), 22297625(c.-53-629T>C), 22297683(c.-53-687C>A), 22297733(c.-53-737A>G), 22297734(c.-53-738C>T), 22297786(c.-53-790C>T), 22297844(c.-53-848A>G), 22297879(c.-53-883C>T), 22297966(c.-53-970T>A), 22297969(c.-53-973G>A), 22297980(c.-53-984G>A), 22298016(c.-53-1020T>C), 22298017(c.-53-1021A>T), 22298094(c.-53-1098C>T), 22298118(c.-53-1122C>T), 22298259(c.-53-1263C>T), 22298379(c.-53-1383G>A), 22298418(c.-53-1422A>G), 22298492(c.-53-1496A>G), 22298499(c.-53-1503T>C), 22298714(c.-53-1718A>G), 22299472(c.-53-2476A>G), 22299480(c.-53-2484T>C), 22299485(c.-53-2489G>A), 22299509(c.-53-2513A>T), 22299523(c.-53-2527T>C), 22299570(c.-53-2574G>A), 22299719(c.-53-2723A>T), 22299724(c.-53-2728T>C), 22299793(c.-53-2797A>G), 22299827(c.-53-2831A>G), 22299926(c.-53-2930T>C), 22300410(c.-53-3414A>G), 22300559(c.-53-3563A>T), 22300694(c.-53-3698C>T), 22300698(c.-53-3702T>A), 22300724(c.-53-3728G>T), 22300791(c.-53-3795A>T), 22300933(c.-53-3937C>T), 22301065(c.-53-4069A>G), 22301066(c.-53-4070G>A), 22301870(c.-53-4874A>G), 22302029(c.-53-5033C>A), 22302049(c.-53-5053C>A), 22302102(c.-53-5106G>T), 22302134(c.-53-5138A>G), 22302157(c.-53-5161C>A), 22302193(c.-53-5197C>T), 22302241(c.-53-5245C>T), 22302734(c.-53-5738T>C), 22303039(c.-53-6043T>C), 22303043(c.-53-6047C>T), 22303131(c.-53-6135A>G), 22303369(c.-53-6373C>T), 22303511(c.-53-6515G>T), 22303513(c.-53-6517A>C), 22304254(c.-53-7258G>A), 22304341(c.-53-7345A>T), 22304350(c.-53-7354C>T), 22304371(c.-53-7375G>C), 22304372(c.-53-7376A>G), 22304429(c.-53-7433T>C), 22304436(c.-53-7440C>T), 22304441(c.-53-7445A>C), 22304487(c.-53-7491G>C), 22304634(c.-53-7638G>A), 22304711(c.-53-7715G>A), 22304727(c.-53-7731C>A), 22304739(c.-53-7743G>A), 22304742(c.-53-7746T>G), 22304760(c.-53-7764G>A), 22304799(c.-53-7803C>T), 22304981(c.-53-7985G>A), 22305069(c.-53-8073C>A), 22305171(c.-53-8175G>A), 22305225(c.-53-8229T>C), 22305227(c.-53-8231A>G), 22305233(c.-53-8237T>G), 22305308(c.-53-8312C>T), 22305350(c.-53-8354A>G), 22305390(c.-53-8394C>T), 22305431(c.-53-8435A>G), 22305524(c.-53-8528G>T), 22305528(c.-53-8532G>C), 22305606(c.-53-8610C>T), 22305779(c.-53-8783G>A), 22305906(c.-53-8910G>A), 22305973(c.-53-8977T>G), 22305974(c.-53-8978C>T), 22305990(c.-53-8994G>T), 22306037(c.-53-9041C>A), 22306287(c.-53-9291A>G), 22306507(c.-54+9225A>T), 22306611(c.-54+9121T>C), 22306773(c.-54+8959T>C), 22306952(c.-54+8780G>T), 22306968(c.-54+8764A>G), 22307049(c.-54+8683T>C), 22307050(c.-54+8682A>G), 22307078(c.-54+8654C>T), 22307118(c.-54+8614A>C), 22307148(c.-54+8584G>A), 22307238(c.-54+8494T>G), 22307241(c.-54+8491T>A), 22307273(c.-54+8459G>A), 22307293(c.-54+8439A>G), 22307350(c.-54+8382G>T), 22307380(c.-54+8352G>A), 22307437(c.-54+8295G>A), 22307481(c.-54+8251T>C), 22307531(c.-54+8201A>G), 22307539(c.-54+8193G>A), 22307632(c.-54+8100A>C), 22307689(c.-54+8043G>T), 22307693(c.-54+8039T>G), 22307757(c.-54+7975G>A), 22307758(c.-54+7974A>C), 22307779(c.-54+7953G>A), 22307788(c.-54+7944C>T), 22307846(c.-54+7886T>A), 22307884(c.-54+7848T>G), 22307928(c.-54+7804G>A), 22308041(c.-54+7691T>G), 22308044(c.-54+7688G>C), 22308059(c.-54+7673G>A), 22308204(c.-54+7528C>T), 22308206(c.-54+7526C>A), 22308263(c.-54+7469G>T), 22308271(c.-54+7461C>G), 22308303(c.-54+7429T>G), 22308318(c.-54+7414G>A), 22308403(c.-54+7329A>G), 22308460(c.-54+7272T>G), 22308481(c.-54+7251T>C), 22308519(c.-54+7213G>T), 22308554(c.-54+7178A>G), 22308578(c.-54+7154G>A), 22308632(c.-54+7100T>C), 22308875(c.-54+6857C>A), 22308919(c.-54+6813C>T), 22309279(c.-54+6453G>A), 22309440(c.-54+6292C>T), 22309520(c.-54+6212A>G), 22309521(c.-54+6211G>A), 22309557(c.-54+6175A>T), 22309570(c.-54+6162A>G), 22309571(c.-54+6161C>T), 22309611(c.-54+6121T>C), 22309932(c.-54+5800C>T), 22309938(c.-54+5794A>G), 22310010(c.-54+5722G>A), 22310083(c.-54+5649C>T), 22310122(c.-54+5610C>T), 22310237(c.-54+5495G>C), 22310244(c.-54+5488C>T), 22310272(c.-54+5460T>C), 22310459(c.-54+5273A>T), 22310599(c.-54+5133C>T), 22310745(c.-54+4987C>T), 22310805(c.-54+4927T>C), 22310891(c.-54+4841T>C), 22310951(c.-54+4781T>G), 22310990(c.-54+4742T>C), 22310999(c.-54+4733G>T), 22311051(c.-54+4681C>T), 22311067(c.-54+4665A>G), 22311074(c.-54+4658T>C), 22311102(c.-54+4630C>A), 22311221(c.-54+4511C>T), 22311429(c.-54+4303G>A), 22311437(c.-54+4295C>T), 22311440(c.-54+4292A>G), 22311441(c.-54+4291A>T), 22311610(c.-54+4122T>C), 22311614(c.-54+4118T>C), 22311639(c.-54+4093A>G), 22311648(c.-54+4084A>C), 22311956(c.-54+3776A>G), 22311964(c.-54+3768T>C), 22312100(c.-54+3632T>C), 22312208(c.-54+3524G>A), 22312604(c.-54+3128A>C), 22312620(c.-54+3112C>A), 22312635(c.-54+3097A>T), 22312638(c.-54+3094T>C), 22312735(c.-54+2997C>T), 22312737(c.-54+2995C>T), 22312749(c.-54+2983T>C), 22312764(c.-54+2968T>C), 22312797(c.-54+2935T>C), 22312857(c.-54+2875T>C), 22312937(c.-54+2795G>A), 22313077(c.-54+2655T>C), 22313091(c.-54+2641G>A), 22313146(c.-54+2586C>T), 22313160(c.-54+2572G>A), 22313181(c.-54+2551T>A), 22313211(c.-54+2521A>G), 22313238(c.-54+2494A>G), 22313684(c.-54+2048C>T), 22313752(c.-54+1980T>C), 22313777(c.-54+1955A>G), 22313823(c.-54+1909G>C), 22314114(c.-54+1618G>A), 22314173(c.-54+1559C>T), 22314214(c.-54+1518T>G), 22314800(c.-54+932T>C), 22315011(c.-54+721T>C), 22315097(c.-54+635T>A), 22315125(c.-54+607T>A), 22315282(c.-54+450A>C), 22315313(c.-54+419T>C), 22315354(c.-54+378G>A), 22315410(c.-54+322C>T), 22315475(c.-54+257T>C), 22315480(c.-54+252C>A), 22315532(c.-54+200T>C), 22315550(c.-54+182G>T), 22315617(c.-54+115T>G), 22315682(c.-54+50A>T), -1kb 22284008(c.4414A>G), 22284220(c.4202T>G), 22284237(c.4185G>C), 22284372(c.4050T>C), 22284375(c.4047T>C), 22284411(c.4011G>A), 22284412(c.4010A>G), 22284442(c.3980A>G), 22284557(c.3865G>T), 22284600(c.3822C>T), 22284730(c.3692T>C), 22284743(c.3679T>C), 22284750(c.3672A>G), 22284855(c.3567A>T), 22284963(c.3459A>G), 22285124(c.3298T>G), 22285206(c.3216A>G), 22285207(c.3215C>T), 22285209(c.3213G>A), 22285266(c.3156T>A), 22285274(c.3148C>T), 22285295(c.3127C>T), 22285333(c.3089C>G), 22285362(c.3060A>G), 22285499(c.2923T>C), 22285546(c.2876G>A), 22285574(c.2848G>A), 22285638(c.2784T>G), 22285697(c.2725G>A), 22285882(c.2540G>A), 22285921(c.2501T>G), 22285928(c.2494C>A), 22285965(c.2457T>A), 22286133(c.2289C>T), 22286168(c.2254T>C), 22286190(c.2232G>A), 22286305(c.2117G>A), 22286475(c.1947G>A), 22286488(c.1934T>C), 22286657(c.1765A>G),
Insertions	+1kb 5'UTR CDS 3'UTR 22286920 (c.1500_1501dupCA), 22287141 (c.1280dupT), 22287944 (c.477dupT), 22288127 (c.294dupA), INTRON 22288810 (c.442-172_442-171dupGT), 22289415 (c.441+644dupA), 22290818 (c.301+194_301+195insCC), 22291970 (c.199+851_199+852insG), 22295102 (c.86+1755_86+1756insTCTC), 22295230 (c.86+1627_86+1628insA), 22300051 (c.-53-3062_-53-3056dupTCTACCC), 22301144 (c.-53-4149_-53-4148insG), 22302102 (c.-53-5107_-53-5106insTA), 22304882 (c.-53-7887_-53-7886insAT), 22307239 (c.-54+8492_-54+8493insC), 22307511 (c.-54+8220dupT), -1kb 22284799 (c.3622_3623insTAA), 22285312 (c.3109_3110insAAT), 22285931 (c.2490_*2491insTAA),
Deletions	+1kb 22318441 (c.-21500_-21499delGA), 22318819 (c.-21878_-21877delTT), 22319352 (c.-22417_-22410delTTCTTAAA), 22319436 (c.-22496_-22494delTTG), 5'UTR CDS 3'UTR 22287402 (c.1019delA), 22287863 (c.558delT), 22287871 (c.549_550delTG), INTRON 22290531 (c.302-333delA), 22291419 (c.200-314_200-306delCCCCCCACA), 22291992 (c.199+829delG), 22291996 (c.199+825delG), 22293413 (c.87-482_87-480delCTA), 22294335 (c.87-1402delA), 22299442 (c.-53-2447delG), 22303068 (c.-53-6078_-53-6073delACACAC), 22303118 (c.-53-6123delA), 22304941 (c.-53-7948_-53-7946delGAA), 22308490 (c.-54+7240_-54+7241delAG), 22308545 (c.-54+7186delC), 22308549 (c.-54+7182delC), 22311799 (c.-54+3932delT), 22314010 (c.-54+1721delC), 22314841 (c.-54+890delA), 22315239 (c.-54+492delA), -1kb 22284200 (c.4219_4221delGTT), 22284676 (c.3743_3745delACC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000164877)	MAAEMRKMVRQPSRESTDGSINSYSSEGNLIFPGVRVGPDSQFSDFLDGLGPAQLVGRQT LATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKT RIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVI GWYKLFPPSSLVDPTLTPLTRRASQSSLESSSGPPCIRS*
MSMv4 transcript	MAAEMRKMVRQPSRESTDGSINSYSSEGNLIFPGVRVGPDSQFSDFLDGLGPAQLVGRQT LATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKT RIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVI GWYKLFPPSSLVDPTLTPLTRRASQSSLESSSGPPCIRS*
homology	100.00 (220 / 220)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Rims1 (ENSMUSG00000041670)
Transcript ID	ENSMUST00000164877


..........TGAACTGCTCAGTGCTGCAGTTCTCCCTCCCAGGGTAGGGTAGTCCACAA
GAACTTACACGGGATCTAAACAGCTTTTATTCGGGGAAATTTGTTTTGATTAATGGTTGT
AATTTTGACACTTTGGAGTACTAACTTTCCTAAGCTCCCCTGGCCGTACTTGGGAACTAC
AGCAGACCATGAGTATTCTGATGAGGGTCCACGGAAGTATGTCTGAAGCTCAAAGAGCAG
AGGGCAGGTATAGGAAAGTTCAAGTTCACATGAGAAATTAAGTTCAGCCTCTGCCCTCCC
TTGCTGCTTGTCTCCTGGCAGAGGATGGCTTGGGTAGGAAAGGACACGAGAAAAGCACCC
GGAGTCTAGAAGTATCTAATAAGGACGTCTTAAAAGTCATGATTTTGACAATTTAAGTCA
GTATAAGTTAAATGTGTTTTACAAGCACCAAGTGGATTTGATGAAAAATATTGATAAGAA
AATATCTTCTGACCCCATGAAAATCTTTCCAACAGGTTCATACTAGAAATTAAGCTTTAG
TTCTGAGCTGTGCTTCAGCGCCGCTTACATGGTCAGAGTCACTCAGTAAAGCCTGCTTGA
GATTAATTTTATTTGCGTATCTCCATTGCACAGCTTGTTTAAAATGTGACGGCATAACAG
CTTTCAGTTCGTAGCTGTTTAGCAGTTTCCACATTTATTTGTTGATACATAGAAGATTGC
CCAATGACTTTGTTCTTAATGCCCCCATTGTATAATAAGCTGTAGAAAAGGCATTCTTGA
TAGAAGCAATTTAATCATGCTGTGTTTCTGTGTGAGAAAGAGAGAGGGAGGGAGCAGGAG
GGAGAAAGAGGAAGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
AGTGTTATTTCACTGAGAGGTCTGATAAATACCCACCCAGAGACAGTAGGAGTCATTCAA
GCATTCACACTAGGTCACTCAAAGACAGAAGGAGCCTTCCAGCATTCAGG
CTAGGTCACAGCTTCTTTGCTCTTCTCCTGGGAAGGACTCCCTGCTGCTGCTTAATTGATTCAAGACAAGCAAG
GTAAGTCAGTGCTCCCTGCTTGTAT..........CCTGTTTCCACTCTCCCCCCATCAG
AGTCCGGCCACAAGAAGTTAAAAAGCACCATTCAGAGGAGTACGGAAACGGGAATGGCGGCTGAAATGCGGAAGATGGTGAGACAGCCCAGCCGGGAGTCCACGGATGGCAGCATCAACAGTTATAGCTCAGAAGGAAA
GTAAGTGACATGATGTCTTTGCTGC..........TTTTGCTCTTATGTGTTTGCTATAG
CTTAATATTTCCTGGAGTTCGCGTGGGACCTGACAGTCAGTTCAGTGATTTCCTTGATGGATTGGGGCCAGCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCCAGCCATGG
GTAAGGATTCTTTTTCTGCAGTTTA..........CATTTTCTTTGGTCTTCACTTGCAG
GCGATATCCAAATCGGGATGGAGGATAAGAAGGGTCAGTTGGAGGTTGAGGTTATCAGAGCCCGGAGCCTTACACAAAAACCTGGCTCCAAATCTACACCTG
GTAAGGAAAAGTTGCACCATTTTGG..........TATATGTCTGCTCATCTTGGTCTAG
CTCCCTATGTGAAAGTTTATCTTTTGGAAAATGGAGCCTGTATTGCCAAAAAGAAGACAAGAATTGCACGGAAAACTCTCGATCCCTTGTATCAGCAGTCCCTGGTTTTTGATGAAAGTCCACAGGGTAAAGTTCTTCAG
GTCAGTAAACTTTGCTTGGTTAATT..........TTACAATATATTTCTCTATCTGCAG
GTGATTGTCTGGGGTGACTATGGAAGAATGGACCACAAATGCTTTATGGGTGTGGCTCAAATCTTGTTGGAAGAACTTGATCTGTCCAGCATGGTGATTGGATGGTATAAATTGTTCCCTCCATCCTCCCTGGTGGATCCCACACTCACTCCCCTGACCCGCCGGGCTTCCCAATCATCACTGGAAAGTTCGTCTGGGCCTCCCTGCATCCGGTCATAGTAAACTCCTAACCTTCCAGCCAAACTCTACATTTCAGGATAATTATCAGAACCAGATATTTCGTGATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGTTGTTCGATAATTGTGTCCCAATTGTTGTTTAAAACATGGCTTCGTATGACAGAACAAGGCAGTCAATCACATTGCAGTAAGAATCGACATGCTAGTGAGAGCCACTGATACTTCTTGCAAATAGGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACACACACCAAACTGAACAAACTGGAAAGTCTCACTCTGTGAAAAGGTGTACTTCACACATTTCTGCACAGACCACAAGCAGTGTTGTTTCCCTGGTGTTTGAGATTCTTGAGTTCTTCTGAGTGCTTTCCTTGTTTGAGCGTTGTTTGCTGGTTTTTTTCCCCATTGTCTCTCTTTCTCTGTCTTCACTATATTTGTTCTTTCCACTAGTTTGTTTGTTTTGTTTTGTTTTGTTTTTCATTTTTTTGTCTTTGTCTTTCTCTGCTTCGTCATAACAGAGTTATGGTGTTCACAGAGACCCTTCCTTTCTTTTTTCCAAAAGCACCAAAAAAGGGCTGAAGCCGTCTCTGTAGCATTTTCCCCAAAGTTTTCAAAAGCTGGGCAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCTTGTATGTGGAATTTCCACACACACACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTGTTCCCATTCCAGATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACCTAGAACTGATGCTGGGGATGAAGGCTAACCACATAGTAGTGCTTTGGAAACCCTTTCCGAAATGCCTTTTTACTTCCTGATAACAAAAGAAAAAAAAATGTTCATGTGTAGAAACCATGCTCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTTTCAGCTATGCCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTCGTCTGCCCTGGAAAGAGCATAGTATGAGCTGTTTAATATTGCACTGGAAATTCCAGTTCATAAACTCTGCACTAAATTAATGTTTTTATTGGATTTCAGTTTACATTTCTTTAAGGTCAATGCAAGCACAAAGCTTGATTTTTTTAAATGCACAATATCTTACTTTGGGGGAAGAAAAAGAATACAGCCAAATACCAATTTGCATATTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTTGGTCCTGCAGCTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAACTTTTTGTGATTTCACAGTTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTTGT
ATAAAAAAATATGAAAAAGAAAGAAAAAAAGCAAAGAGACAAAAGGTTATTTAATAATGT
ATGTTAGCTCCATATAGGCTGGCTTGTATGTTGCATGTACTTGTACAGTTTGCTTGTTAA
TTACTATATTGAAATAACCAAGAAATCTAAGCCATCCATTTTTGTTATAGACATTTTGCA
GGTTTTAGCCAGACTCAGTATGTGGGTCTGGTGTGAAATGTCTATAGATGGACTTTATTT
TTTACCCTCTGGAAAACGTGATGTAGTATGGACCAAAATTCCTTCTAATAAATATTTTGG
TGTCGATTCCTCCTGTGGGGCTGTGACACATGTAGACACTGTGTAAACACTAGGTTTTAA
TCCATAGACATACTGCCTGCACCAAGTGAATCATTTATTATTATTTACACATGTCAGAAT
TCCCTGCCCATTATCCCACAGGGCACAGATTGACCACCACCCACCATGCTGTGCAGGAAG
AACTGAAGCACTTGGTGCACTTCTACTAGATTCCGTTCTGTCTTAGTGGCCAACAATCAA
CCGATTAAAATTGGGTAGTAATATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTG
TGCTTTTAAATGGACTTCCCACTCATGTATGTAAACATGTTTAATAAAACTTACTTTTCA
TGTCAGTTGGTAGCCATCTGCGTTCTATGTTTTGCCAGCTTTCCATTGTGGGTTCTTTGG
TGCAAAAGGAGAACCAGGTGTTGGGACAGGGAGGCTTGGGTTCGCTGTCTGCTGTGGGCA
TTTGATTGACCTGTCACTGCACTATATATGTCTTAACAGACAACCTGAAGGGTACTTTGC
ATTACATATGAGTATTCACTTTGTCAGCCTGTCTTAAGTGAGCACATGTCTATACTTCTG
AAAAGTGGTTTATTAAAGACAATAAATCTCAGTAAGAATCAAACGAAGGACGTTTCTCTG
CTGCTGTTTGAATGTGCTAATAAAAGCGACAACGCTGTCG..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TGAACTGCTCAGTGCTGCAGTTCTCCCTCCCAGGGTAGGGTAGTCCACAA GAACTTACACGGGATCTAAACAGCTTTTATTCGGGGAAATTTGTTTTGATTAATGGTTGT AATTTTGACACTTTGGAGTACTAACTTTCCTAAGCTCCCCTGGCCGTACTTGGGAACTAC AGCAGACCATGAGTATTCTGATGAGGGTCCACGGAAGTATGTCTGAAGCTCAAAGAGCAG AGGGCAGGTATAGGAAAGTTCAAGTTCACATGAGAAATTAAGTTCAGCCTCTGCCCTCCC TTGCTGCTTGTCTCCTGGCAGAGGATGGCTTGGGTAGGAAAGGACACGAGAAAAGCACCC GGAGTCTAGAAGTATCTAATAAGGACGTCTTAAAAGTCATGATTTTGACAATTTAAGTCA GTATAAGTTAAATGTGTTTTACAAGCACCAAGTGGATTTGATGAAAAATATTGATAAGAA AATATCTTCTGACCCCATGAAAATCTTTCCAACAGGTTCATACTAGAAATTAAGCTTTAG TTCTGAGCTGTGCTTCAGCGCCGCTTACATGGTCAGAGTCACTCAGTAAAGCCTGCTTGA GATTAATTTTATTTGCGTATCTCCATTGCACAGCTTGTTTAAAATGTGACGGCATAACAG CTTTCAGTTCGTAGCTGTTTAGCAGTTTCCACATTTATTTGTTGATACATAGAAGATTGC CCAATGACTTTGTTCTTAATGCCCCCATTGTATAATAAGCTGTAGAAAAGGCATTCTTGA TAGAAGCAATTTAATCATGCTGTGTTTCTGTGTGAGAAAGAGAGAGGGAGGGAGCAGGAG GGAGAAAGAGGAAGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA AGTGTTATTTCACTGAGAGGTCTGATAAATACCCACCCAGAGACAGTAGGAGTCATTCAA GCATTCACACTAGGTCACTCAAAGACAGAAGGAGCCTTCCAGCATTCAGG
1	EXON 1	22,315,732	22,315,805	-	-	74	CTAGGTCACAGCTTCTTTGCTCTTCTCCTGGGAAGGACTCCCTGCTGCTGCTTAATTGAT TCAAGACAAGCAAG
	INTRON 1 - 2	22,296,997	22,315,731			18,735	GTAAGTCAGTGCTCCCTGCTTGTAT..........CCTGTTTCCACTCTCCCCCCATCAG
2	EXON 2	22,296,858	22,296,996	-	2	139	AGTCCGGCCACAAGAAGTTAAAAAGCACCATTCAGAGGAGTACGGAAACGGGAATGGCGG CTGAAATGCGGAAGATGGTGAGACAGCCCAGCCGGGAGTCCACGGATGGCAGCATCAACA GTTATAGCTCAGAAGGAAA
	INTRON 2 - 3	22,292,935	22,296,857			3,923	GTAAGTGACATGATGTCTTTGCTGC..........TTTTGCTCTTATGTGTTTGCTATAG
3	EXON 3	22,292,822	22,292,934	2	1	113	CTTAATATTTCCTGGAGTTCGCGTGGGACCTGACAGTCAGTTCAGTGATTTCCTTGATGG ATTGGGGCCAGCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCCAGCCATGG
	INTRON 3 - 4	22,291,115	22,292,821			1,707	GTAAGGATTCTTTTTCTGCAGTTTA..........CATTTTCTTTGGTCTTCACTTGCAG
4	EXON 4	22,291,013	22,291,114	1	1	102	GCGATATCCAAATCGGGATGGAGGATAAGAAGGGTCAGTTGGAGGTTGAGGTTATCAGAG CCCGGAGCCTTACACAAAAACCTGGCTCCAAATCTACACCTG
	INTRON 4 - 5	22,290,200	22,291,012			813	GTAAGGAAAAGTTGCACCATTTTGG..........TATATGTCTGCTCATCTTGGTCTAG
5	EXON 5	22,290,060	22,290,199	1	0	140	CTCCCTATGTGAAAGTTTATCTTTTGGAAAATGGAGCCTGTATTGCCAAAAAGAAGACAA GAATTGCACGGAAAACTCTCGATCCCTTGTATCAGCAGTCCCTGGTTTTTGATGAAAGTC CACAGGGTAAAGTTCTTCAG
	INTRON 5 - 6	22,288,641	22,290,059			1,419	GTCAGTAAACTTTGCTTGGTTAATT..........TTACAATATATTTCTCTATCTGCAG
6	EXON 6	22,286,915	22,288,640	0	-	1,726	GTGATTGTCTGGGGTGACTATGGAAGAATGGACCACAAATGCTTTATGGGTGTGGCTCAA ATCTTGTTGGAAGAACTTGATCTGTCCAGCATGGTGATTGGATGGTATAAATTGTTCCCT CCATCCTCCCTGGTGGATCCCACACTCACTCCCCTGACCCGCCGGGCTTCCCAATCATCA CTGGAAAGTTCGTCTGGGCCTCCCTGCATCCGGTCATAGTAAACTCCTAACCTTCCAGCC AAACTCTACATTTCAGGATAATTATCAGAACCAGATATTTCGTGATCAAGAGCATTGTTG GAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGTTGTTCGATAATTGTGTCCCAATT GTTGTTTAAAACATGGCTTCGTATGACAGAACAAGGCAGTCAATCACATTGCAGTAAGAA TCGACATGCTAGTGAGAGCCACTGATACTTCTTGCAAATAGGAAAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAAGGAAACCTCAAGTTCACACAC ACACCAAACTGAACAAACTGGAAAGTCTCACTCTGTGAAAAGGTGTACTTCACACATTTC TGCACAGACCACAAGCAGTGTTGTTTCCCTGGTGTTTGAGATTCTTGAGTTCTTCTGAGT GCTTTCCTTGTTTGAGCGTTGTTTGCTGGTTTTTTTCCCCATTGTCTCTCTTTCTCTGTC TTCACTATATTTGTTCTTTCCACTAGTTTGTTTGTTTTGTTTTGTTTTGTTTTTCATTTT TTTGTCTTTGTCTTTCTCTGCTTCGTCATAACAGAGTTATGGTGTTCACAGAGACCCTTC CTTTCTTTTTTCCAAAAGCACCAAAAAAGGGCTGAAGCCGTCTCTGTAGCATTTTCCCCA AAGTTTTCAAAAGCTGGGCAAGGTAAAGCCAGGGAAGGGTATCAGCGGCAGCCAGTTTAC AGTTCTTCCAAGTCTTGTATGTGGAATTTCCACACACACACACACACACACACAGACAGT AAAAATCATCACCCAAACTAGTAGTTGCAGAATCACTTCTCAGTGAAGAGCGTATCTGTT CCCATTCCAGATAATTCATTGCTATTTTCCATTGTTTGGCACAGAAGACTTTGAAGGACC TAGAACTGATGCTGGGGATGAAGGCTAACCACATAGTAGTGCTTTGGAAACCCTTTCCGA AATGCCTTTTTACTTCCTGATAACAAAAGAAAAAAAAATGTTCATGTGTAGAAACCATGC TCTCAACTCCCCAAAATGGTGACTAAGAATGGATTTGAGCCTAAGACACTTTCAGCTATG CCCAGGCTTCTCAGCCATGCCCCAGAGTAGACTCGTCTGCCCTGGAAAGAGCATAGTATG AGCTGTTTAATATTGCACTGGAAATTCCAGTTCATAAACTCTGCACTAAATTAATGTTTT TATTGGATTTCAGTTTACATTTCTTTAAGGTCAATGCAAGCACAAAGCTTGATTTTTTTA AATGCACAATATCTTACTTTGGGGGAAGAAAAAGAATACAGCCAAATACCAATTTGCATA TTCTTCATAATTTCCCTTGTGACCTGTGTATGTGCTGCAGGCGCCTGCTTGGTCCTGCAG CTGCATCAATATGCACCCCCTCTCCTTTTATGAGTCGTTCAACTTTTTGTGATTTCACAG TTAGAGCAGCATGACCTGGAGCTGTTCAAAGCTGCATGCATTTTGT
	3' upstream sequence						ATAAAAAAATATGAAAAAGAAAGAAAAAAAGCAAAGAGACAAAAGGTTATTTAATAATGT ATGTTAGCTCCATATAGGCTGGCTTGTATGTTGCATGTACTTGTACAGTTTGCTTGTTAA TTACTATATTGAAATAACCAAGAAATCTAAGCCATCCATTTTTGTTATAGACATTTTGCA GGTTTTAGCCAGACTCAGTATGTGGGTCTGGTGTGAAATGTCTATAGATGGACTTTATTT TTTACCCTCTGGAAAACGTGATGTAGTATGGACCAAAATTCCTTCTAATAAATATTTTGG TGTCGATTCCTCCTGTGGGGCTGTGACACATGTAGACACTGTGTAAACACTAGGTTTTAA TCCATAGACATACTGCCTGCACCAAGTGAATCATTTATTATTATTTACACATGTCAGAAT TCCCTGCCCATTATCCCACAGGGCACAGATTGACCACCACCCACCATGCTGTGCAGGAAG AACTGAAGCACTTGGTGCACTTCTACTAGATTCCGTTCTGTCTTAGTGGCCAACAATCAA CCGATTAAAATTGGGTAGTAATATCTTTCTATCTTGACCACTTGTCTTAACAACCCCTTG TGCTTTTAAATGGACTTCCCACTCATGTATGTAAACATGTTTAATAAAACTTACTTTTCA TGTCAGTTGGTAGCCATCTGCGTTCTATGTTTTGCCAGCTTTCCATTGTGGGTTCTTTGG TGCAAAAGGAGAACCAGGTGTTGGGACAGGGAGGCTTGGGTTCGCTGTCTGCTGTGGGCA TTTGATTGACCTGTCACTGCACTATATATGTCTTAACAGACAACCTGAAGGGTACTTTGC ATTACATATGAGTATTCACTTTGTCAGCCTGTCTTAAGTGAGCACATGTCTATACTTCTG AAAAGTGGTTTATTAAAGACAATAAATCTCAGTAAGAATCAAACGAAGGACGTTTCTCTG CTGCTGTTTGAATGTGCTAATAAAAGCGACAACGCTGTCG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Rims1 (ENSMUSG00000041670)
Transcript ID	ENSMUST00000164877

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 220 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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