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Target CDS Information

Gene Symbol (Gene ID) Fam63a (ENSMUSG00000038712)
Cross Reference
CCDS CCDS17611.1
EMBL AB075603, AK036838, AK169673, ...show all
Fantom 9930017F13, E430005P13
GO GO:0003674, GO:0005634, GO:0005654, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Fam63a-201
protein_id AAH39762.1, AAH51048.1, AAH57901.1, ...show all
UCSC uc008qjd.2
UniParc UPI00000E9541
Uniprot/SWISSPROT Q76LS9
Definition protein_id:ENSMUSP00000127839
translation:
MEQPQTENPAPSKATSAETVESENHEALSGPEKHPQDKDGADADGAAGEQEPGDQTLPPA
QDGENLECPPPEASSSPPGPACGTSPKVETAEVCSRPQELPQSPRIQQPELDFYCVKWIP
WKGERTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELLTHLGNCLLSIKPQ
EKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSIFDLLGIPLYHGW
LVDPQSPEAVSAVGKLSYNQLVEKIITCKHSSDSNLVTEGLVAEQFLETTAAQLTYHGLC
ELTAAATEDELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFC
DSDFHLSHSLGKSHGAEGGGGSPEKQLQVDQQQQQPQGTLGLSDLELAQQLQQEEYQQQQ
AVQPVRTRAPSPQGRGATSGRPAGERRQRSKTESDCVLL

Chromosome 3
Length
Position(start - end)
7,782
95,287,948 - 95,295,731
Orient to Chromosome plus
Link Location : (3:95287948-95295731)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Fam63a (ENSMUSG00000038712)
Transcript ID ENSMUST00000168223
Reports
substitution
cSNPs0
Insertion8
Deletion11
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000168223)
MEQPQTENPAPSKATSAETVESENHEALSGPEKHPQDKDGADADGAAGEQEPGDQTLPPA
QDGENLECPPPEASSSPPGPACGTSPKVETAEVCSRPQELPQSPRIQQPELDFYCVKWIP
WKGERTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELLTHLGNCLLSIKPQ
EKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSIFDLLGIPLYHGW
LVDPQSPEAVSAVGKLSYNQLVEKIITCKHSSDSNLVTEGLVAEQFLETTAAQLTYHGLC
ELTAAATEDELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFC
DSDFHLSHSLGKSHGAEGGGGSPEKQLQVDQQQQQPQGTLGLSDLELAQQLQQEEYQQQQ
AVQPVRTRAPSPQGRGATSGRPAGERRQRSKTESDCVLL*
MSMv4 transcript
MEQPQTENPAPSKATSAETVESENHEALSGPEKHPQDKDGADADGAAGEQEPGDQTLPPA
QDGENLECPPPEASSSPPGPACGTSPKVETAEVCSRPQELPQSPRIQQPELDFYCVKWIP
WKGERTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELLTHLGNCLLSIKPQ
EKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSIFDLLGIPLYHGW
LVDPQSPEAVSAVGKLSYNQLVEKIITCKHSSDSNLVTEGLVAEQFLETTAAQLTYHGLC
ELTAAATEDELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFC
DSDFHLSHSLGKSHGAEGGGGSPEKQLQVDQQQQQPQGTLGLSDLELAQQLQQEEYQQQQ
AVQPVRTRAPSPQGRGATSGRPAGERRQRSKTESDCVLL*
homology100.00 (460 / 460)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Fam63a (ENSMUSG00000038712)
Transcript ID ENSMUST00000168223
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TCAATCAATCCATCCAGAGTCCTTGGAGGAACAAGATTTCTTCTTCCTTA
CCAGCTTGGCACAAAATTTAAGAACATGGTGTTACTTTTTTTTTTTTTTTACATTTTCAT
CTACCAGACCATATGATGACTACTCTCTGGTCCCTGGGGTGAGCAGGACAAAGGTAGCTT
GTCCTTAAGGACACCAGCCATGTGCTCAGAGTGTTCTCTGAAGGGACAAGGTTTGGTGGT
GGATATGGGGTCTGTAACTGACAAGGGTACCTTTAACGAGGCAGCCTAAACATCACCCTG
TTAATAACAATAAGGGTTGTGTGGTTTTGCTCACTGGTTTGGTTTGTTTGCTTGGGAAGC
TACACCAGGGCGTTACACCAGCCCACTGTGGGATAGTTTTAATTTTTCTCTTCAGCCCTC
TTCTTCCTTCTTGGCTTCACTTACACTTAACCTTTCTGTTCTGCCTTTTCTAAAAAAAAA
AAAAATGTTTTATTCTATTTTGTGTGTGAGTATTTTGCCTGTGTGTCTGTGCCAGGAGAG
GGTAGTGGACTCCCCACTACCCCCCCTCCCCCAGCCATGGAGTTGAGGTGGCTATGAGGG
GTACTGTGGGTGCTGGAAGTTAACCTCTGGAAGAACAGCCAGTGGTCTGAGCCGTCGCTG
TAGACCTCTCTGTCTTTTCCCTCATTCTCTATGATTTTCTCTTTCAGGGAAGAAGCCAGC
TGCACCCAGTATCTCCATCCTTTCCAAGCCTGATAACCCATGTCCAGTCGGCCCCATCTG
GTCACAGCAAGTCAGAGGTGGAATGAGCTGAATCCTGTTTATACACTCTGAGAAAAACTT
AATCTGGAGCCAGAGTAGCCTACACAGTTCTCTTTGACTTTTCTTGTTCCCTTTGCTCTG
TAATTCAGTGACCTTGTAGGCCCAGTCTCTCTTCTACACACTAGAATAGCCATAGGCAAG
GTCTCTGAGGTCTCAGAACACTTCACTCCCCTCAGCTGACTGTACCCACT
1 EXON 1 95,287,948 95,288,400 - 0 453
ATGGAACAACCTCAGACTGAGAACCCAGCCCCTAGTAAGGCCACTAGTGCAGAAACTGTT
GAATCTGAAAACCATGAGGCCCTGTCTGGACCAGAGAAGCATCCTCAGGACAAGGATGGT
GCAGATGCTGATGGAGCAGCTGGAGAACAGGAGCCAGGAGACCAAACTTTGCCACCAGCC
CAGGATGGTGAAAATCTTGAGTGTCCTCCTCCTGAAGCTAGCTCAAGTCCTCCTGGGCCA
GCTTGTGGGACGTCACCTAAGGTAGAGACAGCAGAGGTGTGTTCCAGGCCACAGGAACTT
CCCCAGTCCCCCAGGATCCAACAGCCTGAGCTAGATTTCTACTGTGTCAAGTGGATCCCC
TGGAAGGGAGAACGGACCCCGATCATCACCCAGAGCACCAATGGTCCGTGTCCTCTTCTA
GCCATCATGAACATCCTTTTTCTTCAGTGGAAG
INTRON 1 - 2 95,288,401 95,291,021 2,621
GTGAGTGCAGAGCGTGAGGTGCTGG..........CATGTGACCACCCTTCCTTCTTCAG
2 EXON 2 95,291,022 95,291,079 0 1 58
GTGAAGCTGCCCCCTCAGAAGGAAGTGATCACATCAGATGAGCTCCTGACACACCTTG
INTRON 2 - 3 95,291,080 95,291,479 400
GTGAGTGATGTAGTAAGGGGAAACC..........GGCTGATGAGTTTCCTGTCTTACAG
3 EXON 3 95,291,480 95,291,544 1 0 65
GAAACTGCCTTCTGTCCATCAAACCCCAAGAGAAGTCTGAGGGCCTTCAACTTAACTTTC
AGCAG
INTRON 3 - 4 95,291,545 95,292,124 580
GTGAGGCAAGAGGGCAGTGGATGAG..........GCCATCTTGTCTTTTCTCCCACCAG
4 EXON 4 95,292,125 95,292,283 0 0 159
AATGTGGACGATGCAATGACGGTGCTCCCGAAACTGGCCACAGGTCTGGACGTCAATGTG
CGATTCACGGGCGTCTCCGACTTTGAGTATACGCCGGAATGCAGCATCTTTGACTTGCTG
GGAATACCTCTATACCATGGCTGGCTGGTGGATCCACAG
INTRON 4 - 5 95,292,284 95,292,624 341
GTGAGGACAGCAGGCCCTGGTGAAT..........TGCTGTACCCCATTCTACTCCCCAG
5 EXON 5 95,292,625 95,292,727 0 1 103
AGTCCCGAGGCTGTGAGTGCTGTTGGGAAACTGAGTTACAACCAGCTGGTAGAGAAGATC
ATCACCTGTAAACACTCTAGTGACTCCAACCTCGTGACAGAAG
INTRON 5 - 6 95,292,728 95,293,624 897
GTAATGGTGATAGCCCCTTTCCTTG..........TCTCCTGGTTTATGCGTTCTGGCAG
6 EXON 6 95,293,625 95,293,767 1 0 143
GCTTGGTTGCGGAGCAGTTCCTGGAGACCACTGCGGCACAGTTGACCTACCATGGCCTGT
GCGAGCTCACAGCAGCTGCCACGGAAGATGAACTTAGTGTCTTCTTTCGAAACAACCACT
TCAGCACGATGACTAAGCACAAG
INTRON 6 - 7 95,293,768 95,294,794 1,027
GTGACGGGACTCTGGAGGAGGGGAG..........CTCTGGCTGTCTCTCCCTTTTGCAG
7 EXON 7 95,294,795 95,294,986 0 0 192
AGTCACCTGTACCTACTGGTCACTGACCAAGGTTTTCTACAGGAGGAGCAGGTGGTATGG
GAGAGCTTGCATAACGTGGATGGTGACAGCTGCTTTTGTGACTCGGACTTCCACCTAAGT
CATTCCCTAGGCAAAAGCCATGGAGCAGAAGGTGGGGGTGGCTCTCCAGAGAAGCAGCTG
CAAGTGGACCAG
INTRON 7 - 8 95,294,987 95,295,299 313
GTGTGTGGGGCCTTTTGGAATGGCA..........CTACCTTATTGCCTTATCCCTGCAG
8 EXON 8 95,295,300 95,295,425 0 0 126
CAGCAGCAGCAGCCACAAGGCACGTTGGGCCTCAGTGACCTGGAACTGGCCCAACAACTT
CAACAAGAAGAGTATCAACAACAGCAAGCAGTTCAACCTGTGCGAACAAGGGCTCCTTCG
CCCCAG
INTRON 8 - 9 95,295,426 95,295,650 225
GTGAGCGTGCCCTTCTTTGGTCGGC..........TAACTAATTGCTAAATCTCACACAG
9 EXON 9 95,295,651 95,296,163 0 - 513
GGGAGAGGAGCCACATCTGGACGTCCAGCTGGAGAGCGGCGGCAGAGGTCAAAGACTGAG
TCAGACTGTGTTCTGCTCTGACTCTGCCCCCTACAGCCAGCTCAGGCTGTGACTTGCAGG
ATCCCACCCCATCTCAATCCCTGAGACACAGAGAATAACCTATATGCACTGTTGGGGATC
AGAACAGACAATAGGTGCCAAGGTCAGACTTGGTACCATCTTTGCCCTTGTACTGCTATC
TTCTCTTCCTCTCTTCCAAGGCCACATAGGTGTGGGTGGGTGAAAATCTCTGGTGCCCAA
CCCCCTTTCCTGGAATAGTCCCGTGGATATATGGACCCAGGCTGCTTGCTGGTCAAGACA
CCTATCTGGAAAGCATCTCTCTTGTGTCCCTGCCTGTTTGCTCCTGGGCTACCCCACAGA
CCCTGCCGTCTTTGTTTTAGGGTTTGGTTTGAGTTTCTATCTTTATTATTTTTAATGCCT
TCCTAGAGGTTTGGAAATAAAACTTCTTTCCTG
3' upstream sequence
AGATTTGCGTTCCTACCTTGGAGCAGTGGAGTAAAATATTTGACCCGGTTGAGGAATGTG
AACAGGGGAGGAGCCAGGGAGGCGACAGGTTGCCTGTCATTTCTCACAGAGCCAGCAGGG
GGAACCCAAATGTTGGCTCTTCCGCTCTTTCTTTTTACTGTTCTTAATTATGTGAGATTT
CCTGGGGAGGAGATCCAGGAGTGGGGTGTGTTGGTAACTGTTAAGTGCAGTACTGGGGTA
AAAACAGGATTCCTGTTGAATGGCTGAGCATACTTCAAAGGCACCTCAACTCCATGGCCT
CCTCCTGATCCATGGCCTCCTCCACCCAGACTTTAACCAGGAAACAAAAAGATGGTGAAC
TGCCAAAACATTTGACTCCCAGGGAGATGTTCTGGCCTTAGGAGGGATTGAGCAGGGCAG
AGACTGTCAGAGAACTCCCGTTACTCCTCTCTAGAATGGAGCTGGAAGATGCCAGTCTGA
GAAGAGGGAAATCCAAAGGAACTCAGAGGTCCAGCCTCGAGAGGAGGCCAGGGTGCATGG
TGTTCCTTGGGGTTCTTCCATGTTTTCAACCAAATATGGGAATCTCAGCGGTTTCGAGTG
TCGCGTCAGGGTGGGTCAGGAAGGTCTCAGATATCTTCAGCTCTACACAGGGCCAGTAGT
GCTGAACGACAATCCCCTCTGACTACATCCTGCAGGTAAGGGAATGAGTGTTAGAAAAAC
TCATTACTGCCACCTCCTCCACCAAACAGTCTAACCTCACCTCCTGCTGATACATAGCTC
ATCCTCAAGGAAAGACATTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCATGCCTGGAGTC
CCACACTCAATGGAAGGAAAGGGGGTGGAGGGAAGAGCTAGGATGCTAGGGTAAGAAGTA
GCTAAGTTTAGTCAGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAG
GCAAGCGGATCTCTGGGTTCGAGGTCAGCCTGGTCTACAG..........

Sequence Detail Report

Gene Symbol (Gene ID) Fam63a (ENSMUSG00000038712)
Transcript ID ENSMUST00000168223
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 460 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information