top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Inpp4a (ENSMUSG00000026113)
Cross Reference
EMBL AC084390, AC133096
GO GO:0006798, GO:0016316, GO:0036092
goslim_goa GO:0003674, GO:0006629, GO:0008150, ...show all
MGI_trans_name Inpp4a-201
UCSC uc011wjq.2, uc011wjr.2
UniParc UPI00005644E6
Uniprot/SPTREMBL F6R4N2
Definition protein_id:ENSMUSP00000130443
translation:
MCVCFACRVCELEELGELSPCWESLRRQIVTQYQTIILTYQENLTDLHQYKGPSFKASSL
KADKKLEFVPTNLHIQRMRVQDDGGSDQNYDVVTIGAPAAHCQGFKSGGLRKKLHKFEEA
KKQEWESCGTSSSGQSIIYIPQDITRAKEIIAQINTLKTQVSYYAERLSRAAKDRSATGL
ERTLAILADKTRQLVTVCDCKLLANSIHGLNAARPDYIASKASPTSTEEEQVMLRNDQDT
LMARWAGRSSRSSLQVDWHEEEWEKVWLNVDKSLECIIQRVDKLLQKERLHGEGCEDAFP
CSSTCSSKKGEWSEALYPLLTTLTDCVAMMSDKAKAAMVFLLMQDSAPTIASYLSLQYRR
DVVFCQTLTALICGFIIKLRNCLHDGGFLRQLYTIGLLAQFESLLSTYGEELAMLEDMSL
GIMDLRNVTFKVTQATSNASNDMLPVITGNRDGFNVRIPLPGPLFDSLPREIQSGMLLRV
QPVLFNVGINEQQTLAERFGDTSLQEVINVESLVRLNSYFEQFKEVLPEDCLPRSRSQTC
LPELLRFLGQNVHARKNKNVDILWQAAEVCRRLNGVRFTSCKSAKDRTAMSVTLEQCLIL
QHEHGMAPQVFTQALECMRSIGTREVVTQKNLSGLVPIRDLRLDPSLLCSIPLLALSPNL
LIVWLFLSIAYLVTKLRCK

Chromosome 1
Length
Position(start - end)
34,293
37,369,335 - 37,403,629
Orient to Chromosome plus
Link Location : (1:37369335-37403629)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Inpp4a (ENSMUSG00000026113)
Transcript ID ENSMUST00000168546
Reports
substitution
cSNPs5
Insertion19
Deletion20
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num4
non-synonymous num1
synonymous substitutions 37380023 (p.Asp297Asp), 37388870 (p.Ile395Ile), 37388909 (p.Tyr408Tyr), 37390104 (p.Arg470Arg),
non-synonymous substitutions 37389746 (p.Asn441Ser),
B6 transcript
(ENSMUST00000168546)
MCVCFACRVCELEELGELSPCWESLRRQIVTQYQTIILTYQENLTDLHQYKGPSFKASSL
KADKKLEFVPTNLHIQRMRVQDDGGSDQNYDVVTIGAPAAHCQGFKSGGLRKKLHKFEEA
KKQEWESCGTSSSGQSIIYIPQDITRAKEIIAQINTLKTQVSYYAERLSRAAKDRSATGL
ERTLAILADKTRQLVTVCDCKLLANSIHGLNAARPDYIASKASPTSTEEEQVMLRNDQDT
LMARWAGRSSRSSLQVDWHEEEWEKVWLNVDKSLECIIQRVDKLLQKERLHGEGCEDAFP
CSSTCSSKKGEWSEALYPLLTTLTDCVAMMSDKAKAAMVFLLMQDSAPTIASYLSLQYRR
DVVFCQTLTALICGFIIKLRNCLHDGGFLRQLYTIGLLAQFESLLSTYGEELAMLEDMSL
GIMDLRNVTFKVTQATSNASNDMLPVITGNRDGFNVRIPLPGPLFDSLPREIQSGMLLRV
QPVLFNVGINEQQTLAERFGDTSLQEVINVESLVRLNSYFEQFKEVLPEDCLPRSRSQTC
LPELLRFLGQNVHARKNKNVDILWQAAEVCRRLNGVRFTSCKSAKDRTAMSVTLEQCLIL
QHEHGMAPQVFTQALECMRSIGTREVVTQKNLSGLVPIRDLRLDPSLLCSIPLLALSPNL
LIVWLFLSIAYLVTKLRCK*
MSMv4 transcript
MCVCFACRVCELEELGELSPCWESLRRQIVTQYQTIILTYQENLTDLHQYKGPSFKASSL
KADKKLEFVPTNLHIQRMRVQDDGGSDQNYDVVTIGAPAAHCQGFKSGGLRKKLHKFEEA
KKQEWESCGTSSSGQSIIYIPQDITRAKEIIAQINTLKTQVSYYAERLSRAAKDRSATGL
ERTLAILADKTRQLVTVCDCKLLANSIHGLNAARPDYIASKASPTSTEEEQVMLRNDQDT
LMARWAGRSSRSSLQVDWHEEEWEKVWLNVDKSLECIIQRVDKLLQKERLHGEGCEDAFP
CSSTCSSKKGEWSEALYPLLTTLTDCVAMMSDKAKAAMVFLLMQDSAPTIASYLSLQYRR
DVVFCQTLTALICGFIIKLRNCLHDGGFLRQLYTIGLLAQFESLLSTYGEELAMLEDMSL
GIMDLRNVTFKVTQATSNASSDMLPVITGNRDGFNVRIPLPGPLFDSLPREIQSGMLLRV
QPVLFNVGINEQQTLAERFGDTSLQEVINVESLVRLNSYFEQFKEVLPEDCLPRSRSQTC
LPELLRFLGQNVHARKNKNVDILWQAAEVCRRLNGVRFTSCKSAKDRTAMSVTLEQCLIL
QHEHGMAPQVFTQALECMRSIGTREVVTQKNLSGLVPIRDLRLDPSLLCSIPLLALSPNL
LIVWLFLSIAYLVTKLRCK*
homology99.85 (680 / 680)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Inpp4a (ENSMUSG00000026113)
Transcript ID ENSMUST00000168546
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCAGTGGGTCTGCAGCCGTTTCACCCACAGCCTATCTTCTTGCATTCCCA
CCTCAGTGTTTGGTGGTGCCATCTGCCGCATGTACCGCTTCCCAACTACTGATGGTAACC
ACCTACGGATCCTGGAGCAGATGGCAGAGAGCGTCCTCTCCCTGCACGTGCCTCGGCAGT
TTGTGAAGCTACTGCTGGAGGAAGATGCAGCCAGGTGAGGCCAAGGGGATGGACACTCAC
CACTCATGAGCACGTGCCTACGACAGGCTGAGTGCAGACCCAGGCTCTTCCCTTGCTGGC
CCCATGGCCCCAGCCATCTGAAGCCTGTTTGCTCCTCTGACTTACAGTTTGGTGGGCAAG
AATTTACGGGGCTGAGCTTGAAGCCCCAGAGGCTTGGCTAACATCAGCCTATCTTCCCTT
CTTTCTCTCTCTTTTCCTTCTAATCCCTCCTGTTTGGAACCATAGAGATGAGAGCTCAGA
GGATGGCCCTACAGAGTCCTCCCCTCCCACAGAGCCAATCTTTTATCCCGAGGTATATTT
CTCAGTTCCAAAGAAGGCTGAGACTATTTCCTCTCTGTCTCAGACTGTGACCTCCACAGC
TTTTTCTAAATCAGCATTAGTGATTAACATCATGTGTGTTACTGCTTCAAAGAGCTTCTT
CATTGGGCAGGTGCTTTAGAGCCAGCTAAGGTGTTGGCAGCAACTGTACAGGCAGGGCTG
ACACCCAGTGTAGGCAGCAAGCATGCTCAGATGGGAGATGGGGCTCTCCCAGAAGTGTGA
GACTGTCGCTGTGTTCTTGACATGGAAAGGAGGTTGTTGGGAAGAGGGTGGGGAGGTGAG
TGGTTTCTCACATCTCCCGTCCTTCTCTTCTGGAGTAATGCATCGTTCCGCAGAGAACCA
GACCAGTGCTGGAATGAGTGTTCAAGGTCACCAGGCAGAGCTCCTCCTCAGCTGCTTCTC
TCCTCCCCACATTCGCTGCTGGCCTTGAGCATTTACCTCGGCTCCTGTAG
1 EXON 1 37,369,221 37,369,488 - 1 268
TTTCTCTGCGTGCTTCCTGTGTGCACAGTGATCTCTCCCATCATCCTGTGAGGATGGCAG
TGGCACTGCTGGCCTGGTCCTAACTGCAGGGAGGTGAGCCAGCCCTGTGGCCTGATGTGT
GTGTGTTTTGCTTGCAGGGTATGTGAGTTGGAAGAGTTGGGGGAGCTGTCCCCTTGCTGG
GAGAGCCTCCGGCGCCAGATTGTCACCCAGTATCAGACTATCATCCTCACCTACCAGGAG
AATCTGACTGACCTCCATCAGTACAAAG
INTRON 1 - 2 37,369,489 37,371,701 2,213
GTGGGTGTGGCCCTGTCTTCCCAGG..........GCTGCTCTCTTGTTTTATTTCTTAG
2 EXON 2 37,371,702 37,371,806 1 1 105
GTCCTTCCTTTAAAGCAAGCAGTTTGAAAGCAGATAAAAAGTTAGAATTTGTTCCCACAA
ACCTGCACATACAACGGATGCGAGTTCAAGATGATGGAGGCTCAG
INTRON 2 - 3 37,371,807 37,372,310 504
GTACTTGCTTTTCTCACCCCATTGC..........CGGAGGAAAGCTTTCTGTTGCTCAG
3 EXON 3 37,372,311 37,372,419 1 2 109
ATCAGAACTACGATGTCGTCACTATTGGAGCCCCAGCAGCACACTGCCAAGGTTTTAAGT
CAGGAGGTCTTCGAAAAAAGCTGCACAAGTTTGAAGAGGCCAAGAAACA
INTRON 3 - 4 37,372,420 37,372,592 173
GTAAGTGAAGGAAGGTATCTGTGGT..........TCTGTGTGTGTGTGGCTGAGGGGAG
4 EXON 4 37,372,593 37,372,598 2 2 6
GGAGTG
INTRON 4 - 5 37,372,599 37,377,516 4,918
GTGAGGCGCCTGGCCACTAGTCTAG..........TACCAAGAAAACCCCTCTATTTTAG
5 EXON 5 37,377,517 37,377,528 2 2 12
GGAGAGTTGTGG
INTRON 5 - 6 37,377,529 37,377,577 49
GTGGCTTGGATGACTTGGAGAGCCCCTTAGGACCTGTTGTTCCTTTTAG
6 EXON 6 37,377,578 37,377,761 2 0 184
TACATCTTCTAGTGGCCAGTCCATCATCTACATACCACAGGACATCACCCGAGCCAAGGA
GATCATTGCCCAGATCAACACCCTAAAAACCCAGGTCAGCTACTACGCGGAACGGCTCTC
AAGGGCTGCGAAGGACAGGTCAGCTACTGGCCTTGAGAGGACTCTCGCCATCTTGGCAGA
CAAG
INTRON 6 - 7 37,377,762 37,378,840 1,079
GTAGGAGGGGCTGCCCAGTTGCGTG..........AGCCCTGGTTTGTGTGAACCTGCAG
7 EXON 7 37,378,841 37,379,059 0 0 219
ACTCGGCAGTTGGTGACTGTCTGTGACTGTAAGCTGCTGGCCAACTCCATCCATGGGCTG
AATGCAGCTCGGCCCGACTACATCGCTTCCAAGGCCTCCCCTACCTCGACTGAGGAGGAG
CAGGTGATGCTTCGGAATGACCAGGACACCCTGATGGCCAGGTGGGCGGGGAGAAGCAGC
CGGTCTTCCCTGCAGGTGGACTGGCATGAGGAGGAGTGG
INTRON 7 - 8 37,379,060 37,379,921 862
GTGAGTCTGCTGCCCCTGCCTGGGG..........CCCAGACAGTCTTGTTGGTTTGAAG
8 EXON 8 37,379,922 37,380,060 0 1 139
GAGAAAGTGTGGCTGAATGTGGACAAGAGCCTGGAGTGCATCATTCAGCGGGTGGACAAG
CTGCTGCAGAAGGAGCGTCTGCATGGGGAGGGCTGCGAGGACGCTTTCCCCTGTTCGAGC
ACCTGCTCCAGCAAGAAAG
INTRON 8 - 9 37,380,061 37,387,697 7,637
GTAACCGGGACAGCCAAGCCTACTG..........TAACAAGCCTCTCGCTCATGTGCAG
9 EXON 9 37,387,698 37,387,870 1 0 173
GTGAGTGGAGCGAGGCCCTTTACCCTCTGCTGACCACCCTCACAGACTGTGTGGCCATGA
TGAGCGACAAGGCCAAGGCAGCCATGGTCTTCCTGCTCATGCAGGACAGTGCCCCCACCA
TTGCCTCGTACCTCAGCCTGCAGTATCGCCGTGACGTCGTCTTCTGCCAAACC
INTRON 9 - 10 37,387,871 37,388,786 916
GTAAGGCCCCAGAGGACACAGAGCG..........CACCGTTGCCCTGTTTCATCCACAG
10 EXON 10 37,388,787 37,388,910 0 1 124
CTGACAGCCCTCATCTGTGGCTTTATCATCAAGCTGAGGAACTGCCTGCACGACGGTGGC
TTCCTGCGGCAGCTCTACACCATTGGCCTTCTGGCCCAGTTTGAGAGCCTGCTGAGCACC
TATG
INTRON 10 - 11 37,388,911 37,389,649 739
GTGAGACCCCAGTTTGGAGGTGACC..........ATCACCCCTCTCTGATTCATTTCAG
11 EXON 11 37,389,650 37,389,776 1 2 127
GAGAGGAGTTGGCCATGTTGGAGGACATGAGCCTTGGAATCATGGACCTGAGGAATGTGA
CCTTTAAAGTCACTCAGGCCACTTCGAATGCATCAAGTGACATGCTGCCGGTCATCACAG
GAAACCG
INTRON 11 - 12 37,389,777 37,390,048 272
GTAAGATCATCTAACACTCTGCCAG..........ACTTTGCATTTCCTCTCTTCACTAG
12 EXON 12 37,390,049 37,390,189 2 2 141
GGATGGCTTTAACGTGCGGATCCCTCTGCCAGGCCCACTGTTTGACTCCCTCCCCCGAGA
GATCCAGAGTGGCATGCTGCTGCGGGTGCAGCCTGTCCTCTTCAACGTGGGCATCAATGA
GCAACAGACACTGGCTGAGAG
INTRON 12 - 13 37,390,190 37,392,942 2,753
GTGTGTGCCGGTGCCTGCACAGCTG..........CACTGATGCCCTGATTCTCCCCAAG
13 EXON 13 37,392,943 37,393,040 2 1 98
GTTTGGAGATACGTCCTTACAAGAAGTTATCAATGTGGAGAGCTTGGTGCGGTTAAATTC
CTACTTTGAGCAGTTTAAGGAGGTTTTGCCGGAGGACT
INTRON 13 - 14 37,393,041 37,396,069 3,029
GTGAGTATCCCTTCCCTCGGAATGT..........GCCCCTCTTCCCTCTTCTCATCCAG
14 EXON 14 37,396,070 37,396,182 1 0 113
GTCTACCTCGATCTCGGAGTCAGACCTGCCTTCCAGAGCTGCTGCGGTTCCTGGGACAGA
ATGTCCATGCACGCAAGAATAAGAATGTGGACATCCTCTGGCAAGCTGCTGAG
INTRON 14 - 15 37,396,183 37,398,765 2,583
GTACTCGTCATAGTGCAGAAGAGTT..........CCTAAGAGCCTTTTTCCTGCTGCAG
15 EXON 15 37,398,766 37,398,920 0 2 155
GTCTGTCGCCGCCTTAACGGGGTCCGATTCACCAGCTGCAAGAGTGCCAAGGACCGCACA
GCCATGTCGGTGACCCTGGAGCAGTGTCTGATCCTGCAGCACGAGCACGGCATGGCCCCG
CAGGTCTTCACACAAGCCCTGGAGTGCATGCGCAG
INTRON 15 - 16 37,398,921 37,403,448 4,528
GTGAGTGAGGCTGCTGCCAGGCTGC..........TCTCCCAACTTTTTCCTTTTCACAG
16 EXON 16 37,403,449 37,404,439 2 - 991
CATTGGAACACGGGAGGTAGTCACCCAGAAGAACTTGAGCGGCCTGGTGCCCATCCGAGA
CTTAAGGCTAGACCCCAGCCTTCTCTGTTCCATTCCTTTATTAGCTCTAAGCCCCAATCT
ACTGATTGTGTGGCTCTTTCTGAGCATAGCGTACCTGGTGACCAAATTGCGTTGCAAATA
GATATCATTATGAAAAATTAGTCACGAGGCAGACAAAAGTGCCCGAATATATCCAGCCAC
CGTGTACCAAACTGGACAGAAGGAAGGTGTCAAAGCAAGGTCTGCCGAGAAATATCTCAT
GCCTTACAGTTTGATGTTCTGTTCTTCCGAATTGTATATACCTGCCAAATTCTTCCATCA
AGAGGACTCGTTCATTTCAATTGTGTAGCGTCTTCAGTGCTTGTAACATGTTCTTCTGGT
GCCTGTGACTGCAATATTTAGCTGGCCTGGGATTCCTTGTACCAAATATCTTCTGATGTA
TAACTATTTATTACCTGTACATCTTGTGTGCCCTGTTTCAAGAGAAAGGGATGCTGTCTG
AAAAGAATTTGTATATTTGATACTATTCCTTAAGTGTATCGCTAACCTTCCTTGCCTTTT
AACGAAAAAGAGATGCTTATCAACCAGTTGATCTAGATGCCCCCATGTAATAGGACTGTA
CTTCCTACTTACCTTTCACAGCGTAGTCCTGGGAGTGCAATAGCAAACAGTCTGCAGAGT
AACACTTGTTCACCTTCATTTCTTTCCCCTGGGTGACGATGCAGCTGTGGATGCAGGCAT
ACATGCCACCGAGTCCAACACATTACCTGTTGCATGTGACTTCAGGGTTGTTCCTAATCC
AAGCACTAGTGAGGGGTATAAACTTTTTCTTGAAATAACATTTTTTAATTTAAAAACTGT
ATGTTTAATTCCAGATAAAGTCTAGATATCTTTTTTTTCTTTTACTATTAAGTAAGGTTA
ATAGTGAACAAAAATAAAAATGTCCTAAAAC
3' upstream sequence
AACACTGTGGGTTAAGTGTTGGCAATTGGGAGACTTGGGGCTGTGAGGAAGAGGAGTCAC
TCTGGTTTTGCCGCTGCTGCCCTTCTTTTGAACATGGTACTGCTCCTAAAACAGGGTGAC
TAGTAACCCTGACATTTATGTGTGTCAGAGAGGACTTGTTCTCTATAAAAGTAGCCCACT
AGCCTTGTGTGAGACAGTGAATGGCTTCTCCATTGTCTGGTTCATATTAGGCCATGTTTC
CGATTTTGACCTCCAGTTGGATGAAGGGAGTTTCTTTTCTTGAGTCTTGTGAAAAACCTG
GAGTGCCTTAGAGAAGCCAGAGTTTCTAGTACTTGATATTCTCATGTTCCCAAACCCACC
CACCATAAATCTAGCCCTTGTATTCTCTCCCCAAGATCCCCTGATCATACTTGGAGGATT
TCCCCTGGGCTGGATTCCTCTAAAAGAGTAAGTAAAGTCTAAGAGCCGCAGAAGCAGTTA
GTAGTGAAAACCAGATGCCAGACTGAACCTATAAATTGGGCTGGATAAGCCTGTCCTTTG
CAGATCCGAGCACTGCAGGATCCCAGGGCAGGCCTCACCTCTGTGTCTCCACATAAGCAG
GTCTCCATGTCACTCCTAGTATAAGCATAGTGACAGCTCTGTTGCATCTTTCAGTTTAGT
GTCTCACCCATTGCCAGCTGACATTAGTCACCAGACAGACAGTCAATGATTCTTTGATAG
ATGCCCTTCCACCTCAAAGCATGTGCTTCAAGCCTCTAAGACCATTTTGTTTGCTTCATT
TGCATAGGGGAGAAAGAGTCCATAGCTTCCTTCCATCTGCATTCCACGGCCTCCTGGTTG
CTACCCTCCTGATACTATGGAGATGACTCAGGAAGGCATCATTTCCAGGGTTGTGCTGTG
GCCAAGCAGAGAGAGACCATAGACAGTGAGGGCGGCCTGCAGAGGAACTACAGAGACAGC
ACCCTCTGTCCCCTAGAGACCAGGATGTCCATAGCTCTTT..........

Sequence Detail Report

Gene Symbol (Gene ID) Inpp4a (ENSMUSG00000026113)
Transcript ID ENSMUST00000168546
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 680 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information