MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

C2cd4d (ENSMUSG00000091648)

Cross Reference

CCDS	CCDS50983.1
EMBL	AC164562
GO	GO:0003674, GO:0005509, GO:0005544, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0005623, ...show all
MGI_trans_name	C2cd4d-001
OTTP	OTTMUSP00000070079
OTTT	OTTMUST00000130870
RefSeq_mRNA	NM_001136117.1
RefSeq_peptide	NP_001129589
UCSC	uc012ctl.1

UniParc	UPI00004775A7
Uniprot/SWISSPROT	P0CG09
Vega_transcript	C2cd4d-001, OTTMUST00000130870
Vega_translation	187948, OTTMUSP00000070079

Definition

protein_id:ENSMUSP00000128182
translation:

MWLLEKAGYRVRTAEARALQAHPSLVPKRQARGSPSRCNPNVLTPDRIPQFFIPPRLRDP
RGAEGRVDRNPGGRNLPVACSLPHLAGREGWAFLPESPHTRRRESLFHGPRGLAAGLAPA
QSRLHVSAPDLRLCRAPDSDTASSPDSSPCGSPHTPRPQSLSPDEASSADTSPYAPRRAP
PLFHLDFLCCQLRPTKDSVLRLGPRGGQLRLSTEYQAGPGRLRLRLVSAEGLPRPRTRPG
SGGGGCCVILRLQPRVRPGAQRSRVVQSSCNPIFNEDFFFEGLRPPDLAVRSLRAKVLDR
GAGLRRDVLLGECETPLIALLPPLAGGLGPGSSLAPTHLSL

Chromosome

Length
Position(start - end)

1,024
94,363,429 - 94,364,454

Orient to Chromosome

plus

Link

Location : (3:94363429-94364454)
/

Detail Map

name	RP23-148G12.3 (ENSMUSG00000105708)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : RP23-148G12.3

name	C2cd4d (ENSMUSG00000091648)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : C2cd4d note : C2 calcium-dependent domain containing 4D [Source:MGI Symbol;Acc:MGI:2685505]

name	C2cd4d (ENSMUSG00000091648)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000169433

name	C2cd4d (ENSMUSG00000091648) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS50983.1 Uniprot/SWISSPROT:P0CG09 RefSeq_peptide:NP_001129589 RefSeq_mRNA:NM_001136117.1 Vega_transcript:C2cd4d-001 Vega_transcript:OTTMUST00000130870 UCSC:uc012ctl.1 EMBL:AC164562 GO:GO:0003674 GO:GO:0005509 GO:GO:0005544 GO:GO:0005575 GO:GO:0005886 GO:GO:0008150 MGI_trans_name:C2cd4d-001 Vega_translation:187948 Vega_translation:OTTMUSP00000070079 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005623 goslim_goa:GO:0005886 goslim_goa:GO:0008150 goslim_goa:GO:0008289 goslim_goa:GO:0043167 OTTP:OTTMUSP00000070079 OTTT:OTTMUST00000130870 UniParc:UPI00004775A7
definition	note : transcript_id=ENSMUST00000169433 protein_id : ENSMUSP00000128182 translation : MWLLEKAGYRVRTAEARALQAHPSLVPKRQARGSPSRCNPNVLTPDRIPQFFIPPRLRDPRGAEGRVDRNPGGRNLPVACSLPHLAGREGWAFLPESPHTRRRESLFHGPRGLAAGLAPAQSRLHVSAPDLRLCRAPDSDTASSPDSSPCGSPHTPRPQSLSPDEASSADTSPYAPRRAPPLFHLDFLCCQLRPTKDSVLRLGPRGGQLRLSTEYQAGPGRLRLRLVSAEGLPRPRTRPGSGGGGCCVILRLQPRVRPGAQRSRVVQSSCNPIFNEDFFFEGLRPPDLAVRSLRAKVLDRGAGLRRDVLLGECETPLIALLPPLAGGLGPGSSLAPTHLSL

name
type	misc_feature
link
xref
definition	note : contig AC164562.4 78103..202591(1)

name	RP23-148G12.3 (ENSMUSG00000105708)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000130868 Vega_transcript:OTTMUST00000130868 Clone_based_vega_transcript:RP23-148G12.3-001 OTTT:OTTMUST00000130868
definition	note : lincRNA note : transcript_id=ENSMUST00000200467

name	C2cd4d (ENSMUSG00000091648)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000130871 Vega_transcript:OTTMUST00000130871 MGI_trans_name:C2cd4d-002 OTTT:OTTMUST00000130871
definition	note : retained_intron note : transcript_id=ENSMUST00000197526

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	C2cd4d (ENSMUSG00000091648)
Transcript ID	ENSMUST00000169433

Reports
substitution
cSNPs	7
Insertion	3
Deletion	1
SNPs	-1kb 94358185(c.-5244A>C), 94358762(c.-4667T>C), 94358780(c.-4649G>A), 94358888(c.-4541A>G), 94359925(c.-3504C>T), 94359975(c.-3454A>G), 94360027(c.-3402T>C), 94360286(c.-3143C>T), 94360381(c.-3048A>G), 94360421(c.-3008G>C), 94361051(c.-2378C>T), 94361840(c.-1589T>G), 94361941(c.-1488A>G), 94362100(c.-1329C>A), 94362204(c.-1225C>T), 94362261(c.-1168C>T), 94362318(c.-1111A>G), 5'UTR 94363371(c.-58C>G), CDS 94363563(c.135C>G), 94363601(c.173G>C), 94363654(c.226C>A), 94364173(c.745A>G), 94364230(c.802A>G), 94364268(c.840C>T), 94364432(c.1004C>T), 3'UTR 94362461(c.-160G>A), 94362468(c.-153G>A), INTRON 94362560(c.-83+22G>A), 94362657(c.-83+119A>T), 94362680(c.-83+142C>T), 94362691(c.-83+153G>C), 94362775(c.-83+237A>T), 94362839(c.-83+301G>A), 94362847(c.-83+309G>A), 94362862(c.-83+324A>C), 94362926(c.-83+388T>A), 94362936(c.-83+398A>G), 94363110(c.-82-237C>T), 94363120(c.-82-227T>A), 94363185(c.-82-162T>C), 94363247(c.-82-100A>C), +1kb 94364847(c.393C>T), 94364894(c.440A>C), 94364915(c.461T>A), 94364973(c.519C>T), 94365139(c.685C>T), 94365227(c.773A>G), 94365479(c.1025C>T), 94365501(c.1047T>A), 94365810(c.1356C>G), 94366213(c.1759A>C), 94366440(c.1986G>T), 94366535(c.2081A>G), 94366755(c.2301C>T), 94367047(c.2593G>A), 94367080(c.2626C>T), 94367082(c.2628C>T), 94367397(c.2943C>T), 94367572(c.3118A>G), 94367929(c.3475A>C), 94368227(c.3773A>G), 94368519(c.4065G>A), 94368538(c.4084G>C), 94368708(c.4254G>T), 94368743(c.4289G>A),
Insertions	-1kb 94357902 (c.-5527_-5526insA), 94358431 (c.-4998_-4997insAGAT), 5'UTR CDS 3'UTR INTRON +1kb 94368599 (c.4145_4146insTC),
Deletions	-1kb 5'UTR CDS 3'UTR INTRON +1kb 94365512 (c.1059_1060delAA),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	2
non-synonymous num	5
synonymous substitutions	94363563 (p.Pro45Pro), 94364268 (p.Phe280Phe),
non-synonymous substitutions	94363601 (p.Arg58Pro), 94363654 (p.Leu76Ile), 94364173 (p.Ile249Val), 94364230 (p.Ser268Gly), 94364432 (p.Ala335Val),
B6 transcript (ENSMUST00000169433)	MWLLEKAGYRVRTAEARALQAHPSLVPKRQARGSPSRCNPNVLTPDRIPQFFIPPRLRDP RGAEGRVDRNPGGRNLPVACSLPHLAGREGWAFLPESPHTRRRESLFHGPRGLAAGLAPA QSRLHVSAPDLRLCRAPDSDTASSPDSSPCGSPHTPRPQSLSPDEASSADTSPYAPRRAP PLFHLDFLCCQLRPTKDSVLRLGPRGGQLRLSTEYQAGPGRLRLRLVSAEGLPRPRTRPG SGGGGCCVILRLQPRVRPGAQRSRVVQSSCNPIFNEDFFFEGLRPPDLAVRSLRAKVLDR GAGLRRDVLLGECETPLIALLPPLAGGLGPGSSLAPTHLSL*
MSMv4 transcript	MWLLEKAGYRVRTAEARALQAHPSLVPKRQARGSPSRCNPNVLTPDRIPQFFIPPRLPDP RGAEGRVDRNPGGRNIPVACSLPHLAGREGWAFLPESPHTRRRESLFHGPRGLAAGLAPA QSRLHVSAPDLRLCRAPDSDTASSPDSSPCGSPHTPRPQSLSPDEASSADTSPYAPRRAP PLFHLDFLCCQLRPTKDSVLRLGPRGGQLRLSTEYQAGPGRLRLRLVSAEGLPRPRTRPG SGGGGCCVVLRLQPRVRPGAQRSRVVQGSCNPIFNEDFFFEGLRPPDLAVRSLRAKVLDR GAGLRRDVLLGECETPLIALLPPLAGGLGPGSSLVPTHLSL*
homology	98.54 (342 / 342)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	C2cd4d (ENSMUSG00000091648)
Transcript ID	ENSMUST00000169433

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AGGAGAAACAGCCCATCCTAAGGAGGGAGGGAGAGTCTGTTTTTGAGGGA ATACGGTGGCAGGTGTGCCAGCAAAACTGATAACCTCATCTGCCCAGTGGCCAGCTATGC TTTCTAGAGCCTGCCAAAGATGGAGGATGTAAGTCAGCTGGTCCTCACTGTTGTAACCAG CTGTCCTTAGTGTCTTTATATCCAGAAATCCTGAACCTATTTCTTCCCTTTTTGGGGTAC GGGGTGGATATAATTTAGGGAACTAGTCATTGAAAATCATGATGTTGAGGAGTTACTGGG ATGGCTCCAGAGGAGTAGAAGATATGCTGGGTGTGGATACGGCTAAGGGTGGAAGATATG CTGGGAGTGGAAGATATGCTGGGTGTGGGTATGGCTAAGGGTGGGGTGGGGGGGGGGATG GTGGGGACAACAACTAGCCACTGGCCATTGATGACAGTGTCTGTTCTCTGCCCCACTCCC CCAACTTTAGCAGCAGGGGATCAGGTCCAGCAGGCTGCTGCTGGAAATCCAGCTCTGACT GTAGGAAGGAGTTAAAGAAGTCTTGTCGAAGGCCAGAGGGACAGACCCGTGTTTATCCAG GAAAAGAAGTCAGACGTAGGCAGCAGAGGCCCCTGCCAGCTCCTCCCTGAAACACTGAGC TAGGGGAGCAAGATAGAAAGAAAGCTGGTCCCCTACGGTTCTGCACTCTTTACAGCCAGA AGCTGCGACTGCCCATAGGTAAGGTCTACAATCTTAGAGCATTACTGAGCCAGATATGGG CTAGGAGTCCCTGGCAGACTACTGGCACTTTCATTGTTCATGGTGATTCCACGTAGGGGT GCACTGAGCTCACTGCAAAGAAGCCTTCCTGGGCCTGCACTGGGGGTGGCGGAGAATCAA TAGTGCCTTTGTGCTCTAAGGTTTCCTAAGGAAAAAGAGTGGACAGTAGGAGGAACCGCC TAACTGCTCAGCTCCGCCTTACAGCCTTGCTCTGTGGCTGCGGCCTGGCT
1	EXON 1	94,362,438	94,362,538	-	-	101	GAGAAGCTAGGGATAAAGAGGAGAGGAGAGAGGGTCTGTGCCTCATCGAAAGAAGGGAAT CTCCTTGGACTGGCCCTGCTTGTCTACTGGTCAGCAATCAG
	INTRON 1 - 2	94,362,539	94,363,346			808	GTGTGTTTCCGGCTGCCAGGAACAG..........TTCGCATCCTCTTCTGTTCTCTCAG
2	EXON 2	94,363,347	94,364,566	-	-	1,220	CGCACCTCAGGCCAGAGCCTCCAGGCGGGAGGCTGAACTTGGACCTTCTCCGCCTCGGTG TTCCTTTACCCCCACCCACTGCATGTGGCTCTTGGAGAAAGCCGGTTATAGGGTACGGAC CGCAGAGGCCCGGGCGCTGCAGGCGCACCCCAGCCTGGTCCCCAAGCGCCAGGCCCGGGG CTCGCCCTCGCGCTGCAACCCTAATGTCCTCACCCCGGACCGCATCCCACAGTTCTTCAT ACCGCCTCGGCTCCCGGACCCAAGAGGCGCCGAGGGCAGGGTGGACCGCAACCCGGGCGG CCGGAACATCCCGGTGGCCTGCTCGCTGCCGCACCTGGCGGGCCGCGAGGGCTGGGCCTT CCTGCCCGAGAGCCCGCACACGCGTCGCCGCGAGTCCTTGTTCCACGGGCCGCGCGGCCT GGCTGCAGGCCTGGCCCCGGCGCAGTCACGGCTGCACGTCTCGGCCCCCGACCTCCGCCT CTGCCGGGCCCCAGACAGCGACACGGCCTCGTCGCCGGACTCCTCGCCCTGCGGCTCCCC GCACACGCCCAGGCCGCAGTCCCTGTCCCCCGACGAGGCCAGCTCGGCGGACACTAGTCC GTACGCGCCGCGCCGTGCGCCACCGCTCTTCCACCTGGACTTCCTCTGCTGCCAACTGCG GCCGACCAAGGACAGCGTGCTGCGCCTGGGGCCCCGCGGCGGGCAGCTGCGCCTGTCCAC CGAGTACCAGGCGGGGCCCGGGCGGCTGAGGCTGCGCCTGGTGAGCGCCGAGGGGCTGCC TCGGCCGCGGACCCGCCCCGGGAGCGGTGGCGGCGGCTGCTGCGTGGTTCTGCGGCTGCA GCCGCGCGTTAGGCCTGGAGCTCAGCGGAGCCGGGTGGTCCAGGGCAGCTGCAACCCTAT CTTCAACGAAGACTTCTTCTTTGAGGGGCTGCGCCCGCCGGATCTGGCCGTCCGCAGTCT GAGGGCCAAAGTGCTGGACAGGGGCGCGGGGCTGCGCAGGGACGTGCTGCTGGGGGAATG TGAGACGCCCCTCATCGCCCTGCTGCCCCCACTGGCTGGAGGTCTAGGCCCTGGGTCCTC CCTGGTACCTACTCATCTCAGCCTGTAGACTGATAGACACCACAGCTTTCTTGGGAGGTT TCCACTGGGTCTGCAGACTTCATCCTTGCCACCTGCCCGGCATGTATTTATTTTTGTTAA TAAAACATCAGTTTGTCTCT
	3' upstream sequence						AGCTGCATGCTTTCCAGTGGGCACCAAAAACTCTAGGCTTTGCAGCAAGTCTTTTCCACC CAGCCCTTCCTTAAGCAGTGCTTGAGACCCGGAATCCCTGGAAGTGCTTGTTAAACATGG AGAGCCTAGAGTCCATCCCCAAGCGAGTCTGCTTCAAGAGTCCTAGATTGAGTTGGCTCT AGGTGCCTGTCTTAGCTTTATTTCCGTTGTTGTGATAAACTATCTCCCCATCACACACAC ACACACACACACACACACACACACACACACACAAAAGCAGTTTTTATGGAGAAAGGGTTC ATTTGGCTTACAATTCTAGATGATAGTCCACCATTGTGGAGAAGTTATAGCCAGGACTTG AAGCAGCTAGTCACTTCCACAGTGAGGAGCAGGGAGAGAGACAATATAAGCTGGAGAGCT GGTTCAGTGGTTAAATGCAAAGGACTCAAGTTCAGTTCCCAGCACCCACATCAGGCAGCT CATAACTGCCTATCAAACTACAGTTACAGGGGATCTAATGCCCTCTTGTGGCTTATAAAG GTCAGGTGGGTGGGTACGTGCATATGAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTAATGCCCAGGGGGAGTGGCACATGCCTTTAATCTCAGCACTCTAGAT GCAGAGGCAAGCAGAGGCAGGTGGATCTCTGTGAGTTCAAGGACAGTCTGGTCTAAAGAG TGAGTTAGGATAACCAAGGCAACAGAAAGAAACTTTATCTGGGGCTGGAGAGATGGTTCA GAGGTTAAGAGCACTGGCTGCTGCTCTTCCTGAGTTCAATTCCCAGCAACCACATGGTGG CTCATAACCATCTATAATGAGATCTGATCCCCTTCTGGCATGCAGGCACACATGTAAGCA GAATGCTGTATATACAATAAGTAAATGTGTTTTTAAAAAAGAAGAGAAAAAAAAAACTTT GTCTGGAAAAAAGAACAAAATAATAACAGAGCTTGGTGGC..........

Sequence Detail Report

Gene Symbol (Gene ID)	C2cd4d (ENSMUSG00000091648)
Transcript ID	ENSMUST00000169433

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 342 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information