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Target CDS Information

Gene Symbol (Gene ID) Rgs20 (ENSMUSG00000002459)
Cross Reference
EMBL AC102242, AC102311, AC157807
GO GO:0005096, GO:0005737, GO:0005794, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Rgs20-007
OTTP OTTMUSP00000050790
OTTT OTTMUST00000092053
UCSC uc007afk.3
UniParc UPI0001F79752
Uniprot/SPTREMBL E9Q1A3
Vega_transcript OTTMUST00000092053, Rgs20-007
Vega_translation 178622, OTTMUSP00000050790
Definition protein_id:ENSMUSP00000131165
translation:
MRTANGGPRARASPSASPADPGLPHCQKPRRPETPKSLP

Chromosome 1
Length
Position(start - end)
102,448
4,916,930 - 5,019,379
Orient to Chromosome minus
Link Location : (1:4916930-5019379)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rgs20 (ENSMUSG00000002459)
Transcript ID ENSMUST00000170566
Reports
substitution
cSNPs0
Insertion71
Deletion81
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000170566)
MRTANGGPRARASPSASPADPGLPHCQKPRRPETPKSLP*
MSMv4 transcript
MRTANGGPRARASPSASPADPGLPHCQKPRRPETPKSLP*
homology100.00 (40 / 40)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rgs20 (ENSMUSG00000002459)
Transcript ID ENSMUST00000170566
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CTCCTCTTCCCAGGAAGAGGGAGGAAATGACGTGATGTTATTTTTGTGTC
AGGTCACTTTGCTGCTTGAGTTTAGCCCTCCGAGCTCAGGCGCACTGCCCCAGGGGTTCA
CTTCAAGGGTTACTTCGCTAGCTGCGGCGACCCGGGCAAGGGGCATCCTCAGAGGTAGGC
GCCAGGTTCTGCAAATGCGCGGGGCTTCCCCTCCCACCGCCTGAGTCGCAAAAGAAAGGG
AGACTGCCGAGGGACTGAGAGAGACCGGAGTCCCGGCTTAGGCTTTCTTACATACACTCC
ACCCTGCCATCCCAATCGCCAGGTGGGGCCATCCGACTCTGGCTGGCTGGCCGGAACTGA
GTAGGACCACTGTTTAGAGTGGGAGAACAGATCTCTTAGAAAGGCTATACAAAGAGAGTT
GGGGGCGGATGTTAGTGGCGCTGAGGTCAAAGGGTTCAGTGGGGATTGCCCAGCAGGGGC
GGGCAGTTCACAGGCGCGAGACCCGGGGTACAAAGCACCAGCTCCTCTCGCGACCTTTCC
CCGTACCCCCAAGCATCTCTTCATTCACAAGGCCCCAGTACTCATTCACAAACTCTGGAT
CGCCCCCACCCCACGGCGTCCCCCGCAAGCTAAGGCCAGGGGATAAAGAGAAAGGGCCTT
ACAGGCACCCTCAAAGCTCGCTCCCGCCGCACCCATTATTTCGTTGCGATTATAAGAGAG
GAGCCAGGACCGGGGCTCCGCTCGCCCGATTTGGGACTAGGGAGTACCCCCAGCCTCCGA
GTGCTGCGTGCTGCCGCCAGAAGGAGGCGAGCCAGGGGATTGCCCTGCCCCAGGAAAGCG
AGCGAGCGCCGGGGCGGAGAGGAGTCAGAGAAGGGAAAGGAGGAGGAAGAGAGAAGAGCT
CCGGAGCTTAGACCCAGAAACGCAGGAAAGGGCGGGTGGCAGAGAGCCAGCGCGGGCGGA
GTAGGAACCGCTCTGACTAGTGTAAGAAAACTAAGGCACACTCTGGACGC
1 EXON 1 5,019,311 5,019,379 - 0 69
ATGCGCACGGCCAACGGAGGCCCGAGGGCCAGAGCTTCCCCTTCGGCTAGCCCAGCGGAC
CCTGGCCTG
INTRON 1 - 2 4,916,981 5,019,310 102,330
GTAAGTACCTGGCGTCCTCCTCGTC..........TAATTAATTGTCTTGTTTCTTACAG
2 EXON 2 4,916,897 4,916,980 0 - 84
CCTCACTGTCAGAAACCAAGAAGACCAGAGACCCCAAAGAGCCTCCCATGAAATCAGAAC
AGACATTCCAGCATGTGAAGAAAG
INTRON 2 - 3 4,912,549 4,916,896 4,348
GTGAACTCTTGCATTTTATTAGCTC..........TCCTTTTCGTTTGACAACTGCTCAG
3 EXON 3 4,912,314 4,912,548 - - 235
CCCCACGCCTACTCTGGAAGAAGTCTGTGCCTGGGCCCAGTCTTTTGATAACCTGATGGT
CACTCCAGCCGGAAGAAATGCATTCCGAGAATTTCTTCGAACAGAATTCAGTGAAGAAAA
CATGCTCTTCTGGATGGCCTGTGAAGAACTGAAAAGGGAAGCTAATAAAAGCACTATTGA
GGAGAAAGCAAGGATAATCTATGAGGACTATATTTCTATTCTCTCTCCTAAAGAG
INTRON 3 - 4 4,910,663 4,912,313 1,651
GTGTGTGTCTCATTAGAGCCATCGC..........AAATAATTGCTGCTTCTCTCCACAG
4 EXON 4 4,910,474 4,910,662 - - 189
GTCAGCTTGGACTCCCGAGTACGAGAGGTTATCAACAGAAACATGGTGGATCCATCCCAG
CACATATTCGATGACGCTCAACTGCAGATCTACACTCTAATGCACAGAGACTCCTATCCC
CGCTTCATGAACTCCACAGTCTATAAGGATTTGCTTACGTCCTTAGCTGAGAAAACAGTT
GAAGCATAG
3' upstream sequence
GTGGTTTCAAATATATTTATTATTAACAAAACAAGAAAATAACTCATGGACTACAGCTAG
CACAGGGAATTTAGAGATAGGATGTCTTGTGCTACAGTGATTCTTGGACTGTTGTAATAA
CAGATTCCTCCTCCACAGAAAGCTATAGATTCACAATGGAAACTACAACTGCCTTTAGTG
ATACTTATCAGAGAAAAAGGGGTGGGGGGTATGAGAAAAAAGGGGTGGGGGTAAGGCTGC
CTTAGAAAGATAGTGTGCTCACATTCACATAACAGTAGCATGTTCTCAAGGGCAGAGCAT
GTACTAGTCTCTGTTCTGCCTGCAGCACAGATGTACAAAGAGCAAATGGGAACACTTTCT
TTTGCATGAGTTCAATACTGTATTACCCTCCAAAGAAACAGCATTCAAATCTTTCTCAAC
TAACCCTTCCTTCATTCTGAATACTTCACTTGGTACCATGCTAGGACTGAGAGTCATATT
TCACAAAGATGTGACTATTCCTTGTAAAAAATGGAAAATCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCCCCCTCTC
TCTCTCCCTCTTTCCCTCCCTCCCTCTGTGCATGCATGCATCCAAGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATACGTACGTGTATCTGTTAT
GGTTGGTGGAACAAACCATGCTCTTGGTGGGTCACTCTCAGACATTTAGTAAGGAAAACA
ACACTTAAGTGAAAGGGTGACTGTATTATCAGAATCTATCAAGCTGAAGAGTGAATTCTG
AAGTCCAAAGCTTGTCATGTTCACAATTTCTCAAATAAACATATTTTAATTTTTAATGAA
AGATATGTGGATATTTTCATTCTGAAAACAACAAGAGTTTTCTCTCAATCTTGTATTATT
TTATCTGGCATTTCTGAGGAACACAGATCATGTAGGGATG..........

Sequence Detail Report

Gene Symbol (Gene ID) Rgs20 (ENSMUSG00000002459)
Transcript ID ENSMUST00000170566
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 40 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information