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Target CDS Information

Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Cross Reference
CCDS CCDS48218.1
EMBL AK034391, AK081222, AK081622, ...show all
Fantom 9330002C10, 9330185L09, C030011I11, ...show all
GO GO:0003674, GO:0005575, GO:0008150
goslim_goa GO:0003674, GO:0005575, GO:0008150
MGI_trans_name A830018L16Rik-201
protein_id BAC28694.1, BAC38170.1, BAC38273.1, ...show all
RefSeq_mRNA NM_001160371.2
RefSeq_peptide NP_001153843
UCSC uc007ahy.2
UniParc UPI0000F4C9AF
Uniprot/SWISSPROT Q8BZJ8
Definition protein_id:ENSMUSP00000132334
translation:
MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNQGQLQRALS
GSAALWAESESSEPKGTRRDFRSYDKPWQMNAKKPKKSKSDLAVSNISPPSPDSKSLPRS
VDHLKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETLAFNSSLLR
PRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDSWESEDSSSSPAGSLKMEPKTKGLKQQ
QQQHKKLLAAMLSQDSFESIHSPTPSVIEEDIDNEDDAMELLEQIFSV

Chromosome 1
Length
Position(start - end)
182,414
11,414,569 - 11,596,984
Orient to Chromosome plus
Link Location : (1:11414569-11596984)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Transcript ID ENSMUST00000171690
Reports
substitution
cSNPs3
Insertion96
Deletion145
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num0
synonymous substitutions 11518591 (p.Thr77Thr), 11588451 (p.Ala195Ala), 11588532 (p.Ser222Ser),
non-synonymous substitutions
B6 transcript
(ENSMUST00000171690)
MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNQGQLQRALS
GSAALWAESESSEPKGTRRDFRSYDKPWQMNAKKPKKSKSDLAVSNISPPSPDSKSLPRS
VDHLKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETLAFNSSLLR
PRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDSWESEDSSSSPAGSLKMEPKTKGLKQQ
QQQHKKLLAAMLSQDSFESIHSPTPSVIEEDIDNEDDAMELLEQIFSV*
MSMv4 transcript
MASRQQTRIQAYLEKNKIGPLFEELMTKLITETPDQPIPFLIDHLQSKQGNQGQLQRALS
GSAALWAESESSEPKGTRRDFRSYDKPWQMNAKKPKKSKSDLAVSNISPPSPDSKSLPRS
VDHLKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETLAFNSSLLR
PRVIGEWIGRAENDADPLAAEMLQPPVPRSKNDSWESEDSSSSPAGSLKMEPKTKGLKQQ
QQQHKKLLAAMLSQDSFESIHSPTPSVIEEDIDNEDDAMELLEQIFSV*
homology100.00 (289 / 289)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Transcript ID ENSMUST00000171690
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTCGAGTTATCAATAGTGGCTAATAGCCCAATTCCTCTAGTAGATTTCGT
GTATGTGAATTATTAAAGGCAATTATTATAATACTTCCTGGAACAATCCATTCTCATCTT
AACTATTGCACAATGCTTAGATAATTTAAAACGGAGAGAAAAAGCTTGGACAGATACAGG
TCACAGAAACCTGAACACAGTGCAGAAAAAGAAGAAATCTACACTGTCGCAGTTGGTTTT
AAAGAAACCCGTGCCTATTATTGTAGAGACAGCCAACAGTTTTAGTATAAACGTTCTGAT
TTGGCAATACAAAATGGTTTAGAACCAGACAACTCATCTTTGGGGTTTTAGTGCTTTATA
TCGTTTTTTGGTTTTTTAAATGCAAAGAACTCTACACGGAACCTTGTGATAACTGCAGAT
CTTAACCTTGAAAAGTCGTCTCATAGTAAGAAGGTATGAGGTAAAGTTGATGTGCTTCTG
AAGTATCTGGAGGAATAACTGTTGGGTGGGAGCTCAGAGCCCCTGAGCTGTAGCCAGAGG
TGTAGCAGACAGAGCTGAAGGTGTAGGCAAACTTGGAAGCAGAGAGAGCTGGCTTGCTTT
TGTTTCATCTCCCTGCCAAATGCCTAAGGGTTGCTTCCAGCCTTTGGGTGTCTGTACTTC
GGGAATTTTCAATCAGTTCTCAGGCAGCAACGCCGGTTGTGGCTGACTTGCTCAAGGCCA
AGATAGATATATCTGTTCCTTTCTTTTTTCTTTTTAACATAAGCAACTTTGTTTTCGCGG
CAAAACCCACCCATAGTTCTCATCTCCGGCTTTTTCTCATCCCAGGCTAGTGAAGGCAGA
GCGCTGGGCCAGGAGAAGATCAAGCTGAGTGGTTTGGAACTGCGGGTGTAGCTGCCAAGG
AGTAGCCAACAAGCACCAGATTTATGTGCACTTTGAAAGAAGCACCTTTACCATTGGCTT
TTTGAGCGGCTCTGTCGCTAGGGAGCGAGCACCGCCTCGGGGAGCAGCTT
1 EXON 1 11,414,105 11,414,637 - 0 533
GGGTGCTGGTTCCTGGCAGCCAGGAGCTGGGCGCACACCCTGGCGCGCTCTGGGCGGTTC
CGCGCGCTGTCGCCCCTGCGGCCCGCGCGGTCCCCCGCTCGGCTCGCGGAGGCGCTGCAC
AGACACTCGCCTTCGGCCACCGGCTCCTGCTGCTGCTGCCGCCCAGAGGACAGACCAGCC
TCTGCCCGCGATTTCGCCTCGGCGGCGGCGCTGCGGAAAGCGGAGAGCGGGTGGGCGCGA
GCTGCAGGATGCGATGTAGTTCTCTCCTTGCCTCGGAGTTGTCTGAGTTGGTAGAGCCTC
GCCCGGGTTCCCTGAGCCCTGCTCCCTTCGGGCTCGCTGCTAACGGAGTTGCTAGCCATC
GCTGTGCCAGAAAGCTCAGGCTCGGAGCTCCTGCCCTGGGGTAGAGTAGAGCTGTCCCCA
GCCGAGGCGCATTGTCTTCTCTCTGCTGACCCATCTGTTTTCTCATGGCATCTCGTCAAC
AAACCCGAATCCAGGCTTACCTGGAGAAAAACAAGATCGGTCCTCTGTTTGAG
INTRON 1 - 2 11,414,638 11,511,917 97,280
GTAAGGAGCCCTGGTGGGGAATGGT..........AATGCTTGTCTTGTTCTGTCTTTAG
2 EXON 2 11,511,918 11,512,065 0 1 148
GAATTAATGACCAAGTTAATAACTGAGACACCTGACCAGCCAATTCCATTTCTCATTGAC
CATCTTCAATCTAAACAAGGAAACCAAGGACAACTGCAAAGAGCTTTGTCAGGGTCAGCA
GCTCTCTGGGCAGAAAGTGAATCATCAG
INTRON 2 - 3 11,512,066 11,518,577 6,512
GTAATTGGGTGGAGGAAACCAAACT..........ATCTGTTTATATTTTGTTTTAACAG
3 EXON 3 11,518,578 11,518,709 1 1 132
AACCCAAAGGAACAAGAAGGGATTTTAGAAGCTATGATAAACCTTGGCAGATGAATGCAA
AGAAGCCTAAAAAATCAAAAAGTGATCTGGCTGTATCTAATATTTCTCCTCCATCACCAG
ACTCCAAATCAT
INTRON 3 - 4 11,518,710 11,545,153 26,444
GTAAGTTTGTTACTTAAATGTTATT..........AAATAACCGTTTCTTTTAAACATAG
4 EXON 4 11,545,154 11,545,282 1 1 129
TGCCAAGGTCAGTAGACCATCTTAAGTGGAACTGGCGGACTAAACCACAAAGCCGTGATT
TTGATGAATTGAACCACATCCTTCAAGAGAGCAAGAAGCTGGGGAAAGCCCTTGAGAATC
TCTCTCGAA
INTRON 4 - 5 11,545,283 11,562,962 17,680
GTAAGTTCGTTTTCTTGACAATAAT..........CTTGTAAATCTCTTTTGAATCCCAG
5 EXON 5 11,562,963 11,562,991 1 0 29
GTATCGCGATTTCAGATGAACTTGATAAG
INTRON 5 - 6 11,562,992 11,588,373 25,382
GTAAGCTGTGCTCTGTATCTAAAGA..........GCTTTTTCTCTCTTTGCACCTGCAG
6 EXON 6 11,588,374 11,588,546 0 2 173
GAAACATTGGCTTTCAATTCCTCTCTTCTGAGACCTCGTGTGATTGGGGAGTGGATCGGC
AGGGCAGAAAATGATGCCGATCCCCTTGCAGCTGAAATGCTGCAGCCGCCGGTTCCGCGG
AGTAAGAATGACTCATGGGAAAGTGAAGACAGCAGCTCTAGTCCAGCAGGAAG
INTRON 6 - 7 11,588,547 11,596,150 7,604
GTGAGGATCTCCTTCGTGAATCCGT..........AACTAACCTATCAATATTTCTTCAG
7 EXON 7 11,596,151 11,596,317 2 1 167
CTTAAAGATGGAGCCCAAGACGAAAGGATTAAAACAGCAGCAGCAGCAGCACAAGAAACT
CCTGGCTGCAATGCTTTCCCAGGACTCCTTCGAGTCCATCCATAGCCCCACACCATCTGT
AATAGAAGAAGACATTGATAATGAAGACGATGCAATGGAGTTGCTGG
INTRON 7 - 8 11,596,318 11,596,964 647
GTAATTTTAAAAATTAATAACTTCT..........TCACTTTGGGAAATTTTTTTTTCAG
8 EXON 8 11,596,965 11,601,811 1 - 4,847
AACAGATTTTCTCTGTGTAGTCCTAGATGTCCTGGAACTCACTCTGTTGACCAGGCTGAC
CTTGAGCTCAGAGATCCACCTGCCTCTACTTCCTAAGTGTTGGGATTAAAGGTGTGGACC
ACCATGCCTGGCTGGAAAATCATTTTTGTAAAAGGATATGAACTTTTCTTTGCAAGCAGT
CCACAAGTAAAATGTTTTTTTTTTTTAATTGAGTGGTACTAGCTATTCTATAGAGAATTA
AAATAATTGGTATATGCTTTTATAGCAACATTCTATTATATTTGAGCTGAAAAAAGAATA
AATAATATATTTATATGTAAAATATCAATGCATTGCAAAAGTACTTTATTTAAAATTCTA
AAACAGATTTCTTGGAATTGAGTGTTGATAGCAGTAAATTATGTTCTATATGAATGATAA
GTCTCCATGCATATACCTGCAAAGGTGTTACTCAGTAGATGATGGCAGGGTTCCAGATCT
TTTCTAGTCGTCTAATAGCTTCCTAGAGTCAAGATTTAAGGAGACCGAATTATCGCACTT
TCGGTTAGATACTATTGGCACTTGTTTTCTTTTAAGCAATTGAGTCTTATTCCTCTAACT
TCTAATCGTAAAGTGACAGGGCTTCTGGAAACTCTGGCACCTTTATCCATCCTTCATTCA
CTACCAAGGACTTTGATAAGGTCATAAAATAAAATCATTTCTGTTACAGGCATTTTCCAG
TCATGTTAAAAATATAAACTCATCACTTCCGCCATTTTCTTTACCTATGCTATTACAGTC
AAATATAATGGTGACTCCTCGTGCAGAAGAGGGGGCAGAGGTCACCACCGCATACTTGTT
TCAAGAAGCTGGTTCCTCAGCTTAGTCTTGCAGGACAAGGGGGTGTAAACCTGGGAGGTG
GAGTGTGCCCAGACTTCTGGGGACTTGTTCACGTACATATGGGGTCTTTGGTAACTGTGT
CTGTCAATTGCTTCTCTGCTGGTCAGGGATAGTGAAAGACATGATCGAGAGACTCTTAAG
AGATTCATATGTCTACTTTATGCTGATTGTCCTGAAACCTCGCCTGCTCTGTTCAAAGTT
TCTAGCTTTCTAAGCTAAATACCAGAGGGTTGGATCTTGGCATCTACCTTGTGATAAGCC
ATTAGCGATTGGCTCTCATTAATCCTTCTTCTCCTTTTAGATATTAAGCCTGCATTCTAA
CCAGGCTTAACAATAAAAAATTGTAGAAGCTTTGGGCATTCTCTGTGTAGTCTCACATAT
CTTTGCCCAGGTGGCTGAAAGAGATGCTGCTCTCTTAGTGATGAGCATTTCTTGTAATGG
CATGCAATGCTCAAGCACACAGCAGTAGCATTAAATAACTCCACATGCATTTTCCCTGGT
TTTGAAAATGATTTCAGAGAAACATGAGATTGCATTTAGCTGAAGAAAACACAAATGCTA
ACTACTTGACAGTTTATGCGAAATCAAAATTTAGTACATAGAATCAGTGTTGTGATGTAA
CAGACATTGTTTAAAATATTATTTGGGAATCTATGACACGTTGCTGAATGAGCTTGCTGT
AATGTGTTCTTAAGGGTTTAATTTTTTATTATCTATGCCATAATAAAATCAGCTGAAAAT
GTGTCATGCATGGAAAAGTAATCTGTAAATGTGAATTGATACGTAAAATATATGACTTTA
TTTAATATTTATATAAAAATGAATTGCCCATCAATATAACTGGTTGACTTAAGCAGAAAA
TCTTTTAGTGTAGATAGTACATATAAATAAACTTAGTCCTTCTGTCTTTATTGAAATGCA
GTGTTGTTAATACATGTTGATTATATATTCACAGTTATTCAAATGTATGTCTGTGGATTT
ATTTCATAAACATCCTAGGCATGAGGAAATATATTTAAGGATCCATTTCATATTAAAGTC
TATGACTATTTTAAATTCTATTTATAAATTCCCACTTATGAAATAATATCATCTAGCAAA
TAATGAACTATCTGTACGTGGAGATTTAAAAACATACCAACATAAGCCTCTATGGGTTTT
TTTTCCCTTACAGCACTGATCATTTAGAACATCAGAATAGCAAAATAAACTGAAGATTCT
TCATTATAAATGATTCTTTATAAAAATTTTGAGGACTTTAAGACATTCAACCACTGAGTA
TTTCAATATTATGTGTAAGATTGCTTAAAACATTAATTCATTCAGTGTAGTATAAAAGCA
AGTTAATCTAAATTAGTGCCCATTATAGATAAAATATCCAAATGGGGATTACTTTAACAT
ATAGTAATTAAAACACTCAGAAGATTAATTTTTAAGGCATTGAAAAGAGTTACCTCAATT
CAAGTCATTTTTTTTCCACAATATAAGATATTCTAACAAATCCCATTAATTATTCTTCAG
CTACTACCAAAAGTTAACCAAACCTTACGGAGATGCACCAAATCAATCAATACAGCCGCA
GACCTAAGACATCCTGACACTGTGTGAGGTATCTGTCACTTCTCACAATATCTCCCCTGG
GACGGAAGCTCAGTAGAAGGTCCCATCTTGTGTTAGCACCCATGCTCTGAGCTATGACTT
CAGTTGGCTTCCATGTTGTCATCGCCTTTATGAAATACGCATAGACACAATCACCCTGTA
GTTCAAGGACTTGAATAAGGACTTGCTGAACTCATAAGAACACTGATAGAAAGGATATAA
GCAACACCTGAGAAGGCTCACTGATCATTGTTTACAGCCAGAGATCAAGAAGTGGAAGTT
TCTGAGTCATCCACACTCACTAATTTGTTTTGTGTTTGGAATTCTATGCATGGTTTGTTC
TCTTTATTTGTTATTTTTATTTCTTTCCAAAGATACCAGAATTTTTGCTAATAGTAATGA
ATACTCTGTGTGGAGTATTCATGATTTTTAAAATAAGTATAATACAAGAAGATGTCACCA
AAACCGTACATACCACTTGATATCACCTGTACAGCATGTGATAAATGCTTTGCTTTCCAC
ATATAAATAAACAATTCCAACTCTAAAGCACATTGATCCGGGAGAATAAAGTTAATAGTT
TGCGAATAATTCCTAAACATGCAGACAAATCCTTTGTAGTGCTGATTGTACTTCAGGTGA
AAATTTCTTCACTCAGGAGACAACTGCTTCCAGGTATTTCTGTGTCGGTTTACTTAAACT
ATATTGGTTAGTTACACAAAAGTGTGAAGTGATTGACACCTACCAACGGCAGCATTTAGT
GTGGTTTTCATACATGCACTGTGACTTTTCCCTGAGCATAGTGGGAACTGTGGGCCACTG
TGATGCACTGTAGGTGACCTGGTCAAAGACCTGTGCTCCAATTCTAAGATCCAAATCTCC
CATGCTACCTCTTTCTAGTTTTTTTCCCCACATTTTTGCTGTTAAGGGAATTGCTTTTTA
ATCTTTTGCTAATCTCTGAGCTTCAAGCAATTAGTTCTAAATTGCTAGATGCACCATGTG
CCCTCTCTACTGCACAGGCATGGTATGAGGTATTCTCAGAAAATGACACATTCCTCTTCC
ATCACAGCTGACAGGAATACTTGGGAAAAAGGACACAAATTTATGTATAAAACTCTTCTC
CCAACCAGTTATGTTCTCTCACCATGGCTGTGTTATGCAATTGGAGGCATAAGAAAATAA
GTGCTTTCTTTAACTATGGAGAAAATCCTTTCAACAGTAAGAAACAGTGTTTCTCAGAGC
ATCAAAAAATACTTGGGGCTGGAGAGATGGCTCAGAGGTTAAGAGCACTGACTGTTCTTT
CGAAGATCCTGAGTTCAAATCCCAGCAACCACATGGTGGTTTACAACCATCCGTAATGAC
ATCTGTCACCCTCTACTGTTGTGTCTGAAGATAGTGTACTTACATATAAATAATAAATAA
ATCTTTAAAAAAACAAAAAACCTTGGAAAGCCAAGCTCTGAAACCCCAAGTGTAGCCACA
GCCAAGCATGCAAACAGCTTGCTGCCTGCCAGCTCACAGCACCTCATCTTTCACGTGACT
CATGGAGATTTAAGCAGGGGCAGTGACTTCTGTGACTGGTTAAAAATGGGGAGGTGGAAC
ACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAG
CCTGGTCTACAAAATGAGCTCCAGGACAGCCAGGGCTACAAAGAGAAACCCTGTCTCGAA
AAACAAAAAACAAAAAACAAACAACAACAACAACAACAAAACAAAAAAAATGTGGAGGAG
ATTGCTAGACTGTACGATTTATAAGAGAAGAAAGAAGTTATTTTGTATATATGCAGAGGT
TCACACTAGCAGACACAGCTTGGGAAAGAAGAGAAAGGGGTGTTGGGTCAAATTCAGTAA
AGCTAAAACTGTAATTCATGTTTACGTGTTTCTGCAAAGATCAATTACTAAACTTGTTAT
TGATATGATATAGCAGGATTATTTGTTCAGCCTTGTACTTATTTTTATGTATTTTGAATA
TGAACTTTTGCTTTATATAAGACTAATTTAAAATTCACACTGAATCACAACTTTGTTATA
TTTTTCTTGGTTGATACAAATGAATTGTAATTAATTTAGCAATTGTTTGCAGATTAATGT
CAAAATCAATAGCATATTAAAGACATGTTGCAATTCCTCTGATTCCTTTACATCTTGTTT
TATAGCTAAAACTGTGTTTAGATATTTCTATATCATGATATACTTAGTCACATGTTTAAT
TATTTTCAAAGAAACACTTAAGTGAAACAGAATGCTAAGAAGAATGTTCACAAAACTTGA
CAACTATTTCCCCAAACTGTTGTTTTTGTAAAATAAAACTTTGTTTT
3' upstream sequence
AAAAAATTAACATTATGTTATATGTATGTTTTTGGGAATCCTTAACAACAATAAGTACAT
CCATTTATTGATGTAAAGATTTTAAGTGAAAGATTGCCAAGAAGTACAGTGGAGAACTTA
AGGTCGTTACAATGGAAATCAGTGAAGATTAATCTTTTCTATTATATTTTTTAACTTATG
TCCTTCCTGCTGAATGCCTTTGTCATGTTGGATAGATTTGTCCATGTTAAAAAAATTCTC
CTGAGATTTTATTTAAAATTTTAATTTCTTTTAAAGCTTGCTTTTCTAAGCATCAGCGGA
AGAGTTCATTTTATGGGTCATTTATGAGTCATTTTAATTATTGACATTCAGTAAATATGT
GTTTCAAAATATTAACATAAGTGGTATTAGTACAATAAAGCAAAAATCACAGTAAGCTTA
GAAACTTGACTTTTCAAGAATGGCAAAGTGTGTGAAGTCAGGAATGAGAGAGCCTTGATG
CGCACTTCCCCGCTGTTGCAGATTGTAGGGCTAGGAACAGGGACACTCTGCAGATTTGTT
GCTAGAAAAATAAGATTAATAAAAATGTTCACTTTTTTGTAAGATTAAGTAAAATAATTC
ATGCTAAAGTTCTCAACCATCAGGTAAGCTAGAAAACTAATACAATTCTTAAGTGGATTC
TTTTCTTCTTTCCTTTTAATGTGTGAAATTGAGTTCACATAAACAATAAAGTGAGATACA
GAAAAACTTAGGTTTGCCCCATATATTTAGAAAACATTTCTACAACCTCTTCATCTTGGT
CATTTAATTACCTTTTAAAGATGAATACTGACAACTTTCTGACATTTTATAACATATGAA
GCTAATTTCCCCTGGTACTTTAGCCCAAACCATGGCAATTTAAACAGTAGCACTAGCAGA
CACAGGAGCATAAATGTGTTCGAATTCTCTGATGATTCAATTGAACGATTCTTCACAGCA
ATATGAATATTTTTTGTTTGTTTGTTTTTAACAGCATCAA..........

Sequence Detail Report

Gene Symbol (Gene ID) A830018L16Rik (ENSMUSG00000057715)
Transcript ID ENSMUST00000171690
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 289 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information