top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Bmp6 (ENSMUSG00000039004)
Cross Reference
CCDS CCDS26462.1
EMBL BC138593, BC138595, J04566, ...show all
GO GO:0000122, GO:0001503, GO:0001649, ...show all
goslim_goa GO:0002376, GO:0003674, GO:0005575, ...show all
MGI_trans_name Bmp6-201
protein_id AAA40548.1, AAB18235.1, AAI38594.1, ...show all
RefSeq_mRNA NM_007556.2
RefSeq_peptide NP_031582
UCSC uc007qdp.1
UniParc UPI0000023E65
Uniprot/SWISSPROT P20722
Definition protein_id:ENSMUSP00000126999
translation:
MPGLGRRAQWLCWWWGLLCSCGPPPLRPPLPVAAAAAGGQLLGAGGSPVRAEQPPPQSSS
SGFLYRRLKTHEKREMQKEILSVLGLPHRPRPLHGLQQPQPPVLPPQQQQQQQQQQTARE
EPPPGRLKSAPLFMLDLYNALSNDDEEDGASEGVGQEPGSHGGASSSQLRQPSPGAAHSL
NRKSLLAPGPGGGASPLTSAQDSAFLNDADMVMSFVNLVEYDKEFSPHQRHHKEFKFNLS
QIPEGEAVTAAEFRVYKDCVVGSFKNQTFLISIYQVLQEHQHRDSDLFLLDTRVVWASEE
GWLEFDITATSNLWVVTPQHNMGLQLSVVTRDGLHVNPRAAGLVGRDGPYDKQPFMVAFF
KVSEVHVRTTRSASSRRRQQSRNRSTQSQDVSRGSGSSDYNGSELKTACKKHELYVSFQD
LGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEYVPKPCCAPTKL
NAISVLYFDDNSNVILKKYRNMVVRACGCH

Chromosome 13
Length
Position(start - end)
153,134
38,345,933 - 38,499,068
Orient to Chromosome plus
Link Location : (13:38345933-38499068)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Bmp6 (ENSMUSG00000039004)
Transcript ID ENSMUST00000171970
Reports
substitution
cSNPs7
Insertion107
Deletion137
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num6
non-synonymous num1
synonymous substitutions 38346205 (p.Arg91Arg), 38346289 (p.Arg119Arg), 38346388 (p.Glu152Glu), 38346400 (p.Gln156Gln), 38469720 (p.Arg254Arg), 38485011 (p.Gly323Gly),
non-synonymous substitutions 38346376 (p.Asp148Glu),
B6 transcript
(ENSMUST00000171970)
MPGLGRRAQWLCWWWGLLCSCGPPPLRPPLPVAAAAAGGQLLGAGGSPVRAEQPPPQSSS
SGFLYRRLKTHEKREMQKEILSVLGLPHRPRPLHGLQQPQPPVLPPQQQQQQQQQQTARE
EPPPGRLKSAPLFMLDLYNALSNDDEEDGASEGVGQEPGSHGGASSSQLRQPSPGAAHSL
NRKSLLAPGPGGGASPLTSAQDSAFLNDADMVMSFVNLVEYDKEFSPHQRHHKEFKFNLS
QIPEGEAVTAAEFRVYKDCVVGSFKNQTFLISIYQVLQEHQHRDSDLFLLDTRVVWASEE
GWLEFDITATSNLWVVTPQHNMGLQLSVVTRDGLHVNPRAAGLVGRDGPYDKQPFMVAFF
KVSEVHVRTTRSASSRRRQQSRNRSTQSQDVSRGSGSSDYNGSELKTACKKHELYVSFQD
LGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEYVPKPCCAPTKL
NAISVLYFDDNSNVILKKYRNMVVRACGCH*
MSMv4 transcript
MPGLGRRAQWLCWWWGLLCSCGPPPLRPPLPVAAAAAGGQLLGAGGSPVRAEQPPPQSSS
SGFLYRRLKTHEKREMQKEILSVLGLPHRPRPLHGLQQPQPPVLPPQQQQQQQQQQTARE
EPPPGRLKSAPLFMLDLYNALSNDDEEEGASEGVGQEPGSHGGASSSQLRQPSPGAAHSL
NRKSLLAPGPGGGASPLTSAQDSAFLNDADMVMSFVNLVEYDKEFSPHQRHHKEFKFNLS
QIPEGEAVTAAEFRVYKDCVVGSFKNQTFLISIYQVLQEHQHRDSDLFLLDTRVVWASEE
GWLEFDITATSNLWVVTPQHNMGLQLSVVTRDGLHVNPRAAGLVGRDGPYDKQPFMVAFF
KVSEVHVRTTRSASSRRRQQSRNRSTQSQDVSRGSGSSDYNGSELKTACKKHELYVSFQD
LGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEYVPKPCCAPTKL
NAISVLYFDDNSNVILKKYRNMVVRACGCH*
homology99.80 (511 / 511)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Bmp6 (ENSMUSG00000039004)
Transcript ID ENSMUST00000171970
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AACGCCTACATTCCATCAATAAGAGAAACTGAGCAGAGAAGGAGAAAACT
GTCATACTATTTTCTCCTTCGGTAACGGCATGGATTAAATAGCTGTGTTTGCTTTTATTT
AGCAGAGGAAGAAGAAAGTTTAGATCGGGGTCGTGATCGGATCTGTCTTCCTAGCAATGA
CCTCTTTGCCTTTCTTACCCGCCCAAGCAACTCCTGATGCCTCCAAGAATTCTGTGTGCT
AGAAACCTACGCTCCCTAGGCAGAGGCAAGGCCCTGGGAGAAGGGAGGGTGAAAGAAGGG
GGTGGGCCTATGTAAATAGCCCGCAAGAGTCACCTCTCCATTGGCTGGTAGCCTGTCCGT
TACCGAGTAGGGCAGGGCGTTCCTGGGCTTGAGTGCGGTACCTGAGCGAGACGCGCAGCA
GAAAGCCCACGTTGGCGGCGGCCGGGAGCTCAGTGCGCAGAGACGGGAGACTGCGAATTC
CCGAGCCGACGCCGCAGCCTGCGTTCCGAGTTCCGCTCCTCGACTCTCTCATCGCCTCGG
AGAGCGGGATCCTCCGGGCACCCGAGAGACTGCGGAGAGGAAAGCTAGATCGTGGCCGCC
TCCACTTGGGGAGGCGCGCGGAGATTCCGAAGGGGAGAGACGGTGCCCGAAGGCGGAGGG
GCGCTGAGTTTCGGACCAGAGGGAAGTTAAAGCCGCGCGGAGAAAATTGGCTTTTTAGGA
CGCAGGGACGCCACAGCCTGGGACCCACAGGGGAGTAAACTTCACGACTGTCCTACAAGC
CAGGAGAGGCGTGCGAGGGGATGGTGCCCGGCATCGCTTCCACCTCTTGATCTGTCGTCT
CCAGCCCCCCTCGGCCAGCCGCCTCTGAGGGTTCAGGGCAGCGCACGTGTGCAGACTGCG
AGTGACCGTGCCGTGACCCGCCCGGGGACGCCGGCTGCAGCGCAGTCCTGCCTAGGACAC
ACCTGGCTCACTCAGCCCGTGCGCCTCCAGAGACCTGCGGGAGAGTGGAG
1 EXON 1 38,345,716 38,346,587 - 1 872
GATCCTGGCCGTCGCCCCGTCGTCTCTTCTCCACCCGGGCTTCTGGGGGCGCCGCGGATG
ACCATGAGAGATAAGGACTGAGTGCCAGGACCGGGAAGAGAGCCCGCCGAGAGGTGGCGG
GGGCTGCCCACTCCGAGGGCCACAGCCTCCGCGCTCCGGCCTCGCTCCGCCGCTCGACGC
CTCGCGGGCCCCGCGGGGGCAGCTGGGCTGGGCGGCGATGCCCGGGCTGGGGCGGAGGGC
GCAGTGGCTGTGCTGGTGGTGGGGGTTGCTGTGCAGCTGCGGCCCCCCGCCACTGCGGCC
CCCTCTGCCGGTAGCCGCGGCCGCCGCCGGGGGGCAGCTGCTGGGAGCCGGCGGGAGCCC
GGTGCGCGCTGAGCAGCCACCGCCACAGTCCTCTTCTTCGGGCTTCCTCTATCGGCGGCT
CAAGACCCACGAGAAGCGGGAGATGCAAAAGGAGATCCTGTCGGTGCTGGGGCTCCCGCA
CAGGCCGCGACCCCTGCACGGTCTCCAGCAGCCTCAGCCCCCGGTGCTCCCGCCACAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGACGGCCCGTGAGGAGCCCCCTCCAGGGCGGCTGAA
GTCCGCTCCACTCTTCATGCTGGATCTCTACAACGCCCTGTCCAATGACGACGAAGAGGA
AGGGGCATCGGAAGGTGTGGGGCAGGAGCCTGGGTCCCACGGAGGGGCCAGCTCGTCCCA
GCTCAGGCAGCCGTCTCCCGGCGCTGCACACTCCTTGAACCGCAAGAGTCTCCTGGCCCC
GGGACCCGGTGGCGGTGCGTCCCCACTGACTAGCGCGCAGGACAGCGCTTTCCTCAACGA
CGCGGACATGGTCATGAGCTTTGTGAACCTGG
INTRON 1 - 2 38,346,588 38,469,613 123,026
GTAAGGATTTTGGGGGTAGCATCGC..........CTCTCTCTCTCGTTTAATCCTCTAG
2 EXON 2 38,469,614 38,469,806 1 2 193
TGGAGTACGACAAGGAGTTCTCCCCACATCAACGACACCACAAAGAGTTCAAGTTCAACC
TATCCCAGATTCCTGAGGGTGAGGCGGTGACGGCTGCTGAGTTCCGAGTCTACAAGGACT
GTGTGGTGGGGAGTTTTAAAAACCAAACCTTTCTTATCAGCATTTACCAAGTCTTGCAGG
AGCATCAGCACAG
INTRON 2 - 3 38,469,807 38,484,890 15,084
GTATGGAGGCTAGAGGAAGCCCAAG..........TTCTTTCTTTTTCTCATTCTTGCAG
3 EXON 3 38,484,891 38,485,039 2 1 149
AGACTCTGACCTATTTTTGTTGGACACCCGGGTGGTGTGGGCCTCAGAAGAAGGTTGGCT
GGAATTTGACATCACAGCAACTAGCAATCTGTGGGTGGTGACACCGCAGCACAACATGGG
ACTCCAGCTGAGTGTGGTGACTCGGGATG
INTRON 3 - 4 38,485,040 38,485,738 699
GTAAGTTGGGATTTGCGCCCTGCCA..........GGGTGGGCTTTGGTTTGCATTAAAG
4 EXON 4 38,485,739 38,485,936 1 1 198
GACTCCACGTCAACCCCCGTGCGGCGGGCCTGGTGGGCAGAGACGGCCCTTACGACAAGC
AGCCCTTCATGGTGGCCTTCTTCAAGGTGAGCGAGGTCCACGTGCGCACCACCAGGTCAG
CCTCCAGTCGGCGGCGGCAGCAGAGTCGCAACCGGTCCACCCAGTCGCAGGACGTGTCCC
GGGGCTCCGGTTCTTCAG
INTRON 4 - 5 38,485,937 38,497,294 11,358
GTGAGTGTGGACAGGGCCTTAGTTC..........TGTGTCTTTTTATGTCCTCCAACAG
5 EXON 5 38,497,295 38,497,371 1 0 77
ACTACAACGGCAGTGAGTTAAAAACAGCTTGCAAGAAGCATGAGCTCTATGTGAGCTTCC
AGGACCTGGGATGGCAG
INTRON 5 - 6 38,497,372 38,498,716 1,345
GTGAGTCTCAGGGTAAGGAGGGTGT..........CTGCTTCCTTTTGCTTTATCTCAAG
6 EXON 6 38,498,717 38,498,827 0 0 111
GACTGGATCATTGCACCCAAAGGCTACGCTGCCAACTACTGTGATGGAGAGTGTTCCTTC
CCACTCAACGCACACATGAATGCCACCAACCACGCCATTGTACAGACCTTG
INTRON 6 - 7 38,498,828 38,498,918 91
GTGAGTGCTCCAACCCGGCTGTAAA..........TCCCACACTTCTATTCTGGAAACAG
7 EXON 7 38,498,919 38,499,728 0 - 810
GTCCACCTTATGAATCCCGAGTACGTCCCCAAACCATGCTGCGCACCAACCAAACTGAAT
GCCATCTCGGTTCTTTACTTCGATGATAACTCCAATGTCATCTTGAAAAAGTACAGGAAT
ATGGTCGTGAGAGCTTGTGGTTGCCATTAAGTTGAAGCTGGTGTGTGTGTGTGGGTGGGG
GCATGGTTCTGTCTTGGATTCCTAACAACAACATCTGCCTTAAACCACGAACAGCAGCAC
AGCGAAGCGGGATGGCGACACGCAGAGGGATCGTGACACGCAGACACATCTCCCGCTGGT
GCCTTACCCACGGAGGCTTTTATGAGGACCTTGTCAAGGGCTTTCCCAGTTCCTAACTGA
GCAGTTGCTGGTCTGCAGGAAGCTGGAAGGCTTGTAGTACAGGCCTGGAAACTGCAGTTA
CCTAATGTTCGCCTCCCCCAACCCCACCTGGGCTAGTTTTAGCTTTTAGATCTAGCTGCT
TGTGGTGTAAGTAGAGAGTAAACTTGAAGGAATATTAAATATCCCTGGGTTGAAAGACCC
GGTGGTGGCTCTACAGCACCCATCCCAGGGAGATTTTTGCAGACATCCGAATGGAGGGGA
GGAGGGCACTCTTTCAGGTTCCATTCCCAGCAAGGGCAGCTCACACAGGACCTGCAGCCT
GGCCATCAGCAGGCTCTGTGGAGGTGCCTTCTGTCTACTGTTGTAGTTACGTGTTTTCTG
TTGACTCTCGGTGGTGTGAGAATGTACTAATCTCTGTCAAGACAAACTGTAGCATTTCCA
CCCCATCCTCCTCCCTCCCTCACAGAATTC
3' upstream sequence
TTTACTAGAACCCAAAGTAGACAGACCGTACTTTGTGGCAGAGCCATGAAGCATCTGCCG
TAGCCGTCATTTAAGCCACAGAACAGCAGAATGTGATTCTACATCTCGTGGGCAGCCTGG
CTGGACACGCGTGTTAACATCAGGAACACTAGCTCCAACATCGGCTCTGTAACCCCTAAC
TCTGCTCTTTGCCTTTTCCCTACCTAAGCATTCCATGGCTCAGGGCTAGAGTCTAAAGCC
GAAACCCAGAGAGGGAAGGGCCCTGCCTGTAAGAATGGGTTTGTCAAGGTGAGCATGCTG
TGTGTAAACCAAAACCACCATTTCCTCTTGTAGAAAGTAAGACTCAGACTGAATCTTAGA
ATATTTTTTAAATGTCCTTTTCACAATCATGTACCGGGAAGCCAATTTCATACTAAACTG
ATTAAATAATACATTTACAATCTGTAACTGTACTTACAGCCTTCTTTGTAAATAGAAACT
ATAATTTATTGTCTATTTTATATCCATTTTGCTGTAACATTTAAGCAAAGACCAGACTTT
TTTTCTTTAAAAAAAAAAAGTTTATTTAGAAAGTATAAACCAAATTGTACCACTTGAGTT
TTCTTTTCATATAAGACCATGATGCTAAGCTGAAGCCACTGTGAGCTGGGCCAACAGAGC
TGGTTTCCAAGGACAGCTGTGACCCACACGTGATTAATAATAAACGTTCATAACAGGCTG
GCGGGGCGCCTCTGCTCCCGATGTTTTGGAAGCAGACGTGTTCTGGTTTCAAGTCTCCTT
GCTACACGTCTTGTGCCAGGTGCTGATTTCACCCCGCTCGTGGGAGGTAGGTGAAGGGCC
TGGGCACAAACACAGTGGTTCTGAGAACAAGACAGACAGAGGCATGACGTGGGCTGCATC
TTCACAGAGTTACGAGCAGCGGCGTCTAATAACCTGGAAGGCGGGAACCGGAAGTAGCCA
TGCGATATCCAACCTTGGGCTTCCTAGGCAAGGGCAGCCC..........

Sequence Detail Report

Gene Symbol (Gene ID) Bmp6 (ENSMUSG00000039004)
Transcript ID ENSMUST00000171970
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 511 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information