MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Jarid2 (ENSMUSG00000038518)

Cross Reference

EMBL	AC166074, AC170597
GO	GO:0000122, GO:0001889, GO:0003677, ...show all
goslim_goa	GO:0002376, GO:0003674, GO:0003677, ...show all
MGI_trans_name	Jarid2-008
OTTP	OTTMUSP00000054209
OTTT	OTTMUST00000096902
UniParc	UPI00021CF76C
Uniprot/SPTREMBL	G3UZ12
Vega_transcript	Jarid2-008, OTTMUST00000096902
Vega_translation	214405, OTTMUSP00000054209

Definition

protein_id:ENSMUSP00000134302
translation:

MAAPRVCQVQFLVAYLEEPGIEGPGCKHKGSLLNLSRIVPAQLQ

Chromosome

Length
Position(start - end)

33,535
44,840,814 - 44,874,350

Orient to Chromosome

plus

Link

Location : (13:44840814-44874350)
/

Detail Map

name	Jarid2 (ENSMUSG00000038518)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Jarid2 note : jumonji, AT rich interactive domain 2 [Source:MGI Symbol;Acc:MGI:104813]

name	Jarid2 (ENSMUSG00000038518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000174068

name	Jarid2 (ENSMUSG00000038518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000173704

name	Jarid2 (ENSMUSG00000038518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000044608

name	Jarid2 (ENSMUSG00000038518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000173367

name	Jarid2 (ENSMUSG00000038518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000173246

name	Jarid2 (ENSMUSG00000038518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000172977

name	Jarid2 (ENSMUSG00000038518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000173906

name	Jarid2 (ENSMUSG00000038518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000173003

name	Jarid2 (ENSMUSG00000038518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Jarid2-011 Vega_transcript:OTTMUST00000096888 Uniprot/SPTREMBL:G3UZQ8 EMBL:AC166074 EMBL:AC170597 GO:GO:0000122 GO:GO:0001889 GO:GO:0003677 GO:GO:0005515 GO:GO:0005634 GO:GO:0008285 GO:GO:0035098 GO:GO:0042127 GO:GO:0045892 GO:GO:0048536 GO:GO:0048538 MGI_trans_name:Jarid2-011 Vega_translation:214396 Vega_translation:OTTMUSP00000054200 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 OTTP:OTTMUSP00000054200 OTTT:OTTMUST00000096888 UniParc:UPI00021CF766
definition	note : transcript_id=ENSMUST00000174068 protein_id : ENSMUSP00000134593 translation : MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNAQKRQHGEGLAGSLKAVNGLLGNAQAKALGPASEQSEN

name	Jarid2 (ENSMUSG00000038518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS36646.1 Uniprot/SWISSPROT:Q62315 RefSeq_peptide:NP_001191973 RefSeq_mRNA:NM_001205044.1 RefSeq_peptide_predicted:XP_006516921.1 Vega_transcript:Jarid2-003 Vega_transcript:OTTMUST00000096890 UCSC:uc007qgr.2 Fantom:B130048B16 Fantom:C530046H17 Fantom:M421020G19 EMBL:AK045214 EMBL:AK147226 EMBL:AK164134 EMBL:BC003374 EMBL:BC052444 EMBL:BC060695 EMBL:CH466546 EMBL:D31967 GO:GO:0000122 GO:GO:0000977 GO:GO:0001227 GO:GO:0001889 GO:GO:0003677 GO:GO:0003682 GO:GO:0005515 GO:GO:0005634 GO:GO:0006351 GO:GO:0008285 GO:GO:0016568 GO:GO:0031061 GO:GO:0035097 GO:GO:0035098 GO:GO:0042127 GO:GO:0045892 GO:GO:0048536 GO:GO:0048538 GO:GO:0048863 GO:GO:0051574 MGI_trans_name:Jarid2-003 PDB:2RQ5 Vega_translation:214398 Vega_translation:OTTMUSP00000054202 goslim_goa:GO:0001071 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0030154 goslim_goa:GO:0034641 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 goslim_goa:GO:0051276 protein_id:AAH03374.1 protein_id:AAH52444.1 protein_id:AAH60695.1 protein_id:BAA06736.1 protein_id:BAC32264.1 protein_id:BAE27780.1 protein_id:BAE37641.1 protein_id:EDL41007.1 OTTP:OTTMUSP00000054202 OTTT:OTTMUST00000096890 Reactome:R-MMU-212165 Reactome:R-MMU-212300 Reactome:R-MMU-74160 UniParc:UPI000000406B
definition	note : transcript_id=ENSMUST00000173704 protein_id : ENSMUSP00000134675 translation : MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNAQKRQHGEGLAGSLKAVNGLLGNAQAKALGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQSQPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQDEEDVEEEDDETEDVKATTNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSAREKEPAHKHRSKEATPGKEKHSEPRADSRREQASGAQPTAASAAASSAKGLAANHQPPPSHRSAQDLRKQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKYTATVTKGTVTYTKAKRELVKETKPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPAASGLKASSRLNPKSCTKEVGGRQLREGLRNSKRRLEEAQQVDKPQSPPKKMKGVAGNAEAPGKKASAASGEKSLLNGHVKKEVPERSLERNRPKRAAAGKNMLGKQAHGKTEGTPCENRSTSQPESSHKPHDPQGKPEKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKYGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKEVLMEKEILEKRKGPLEGHTESDHHKFHSLPRFEPKNGLVHGVTPRNGFRSKLKEVGRAPLKTGRRRLFAQEKEVVKEEEEDKGVLNDFHKCIYKGRSVSLTTFYRTARNIMNMCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSILRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQGNGTPGLQMLESNVMISPEVLCKKGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYNVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDELRDTELRQRRLLFEAGLHSSARYGSHDGNSTVADGKKKPRKWLQLETSERRCQICQHLCYLSMVVQENENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKVSGKHGGIENCLNKPTPKRGPRKRATVDVPPSRLPSS

name	Jarid2 (ENSMUSG00000038518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS36646.1 Uniprot/SWISSPROT:Q62315 RefSeq_peptide:NP_068678 RefSeq_mRNA:NM_021878.3 RefSeq_peptide_predicted:XP_006516921.1 Vega_transcript:Jarid2-002 Vega_transcript:OTTMUST00000096891 UCSC:uc007qgs.2 Fantom:B130048B16 Fantom:C530046H17 Fantom:M421020G19 EMBL:AK045214 EMBL:AK147226 EMBL:AK164134 EMBL:BC003374 EMBL:BC052444 EMBL:BC060695 EMBL:CH466546 EMBL:D31967 GO:GO:0000122 GO:GO:0000977 GO:GO:0001227 GO:GO:0001889 GO:GO:0003677 GO:GO:0003682 GO:GO:0005515 GO:GO:0005634 GO:GO:0006351 GO:GO:0008285 GO:GO:0016568 GO:GO:0031061 GO:GO:0035097 GO:GO:0035098 GO:GO:0042127 GO:GO:0045892 GO:GO:0048536 GO:GO:0048538 GO:GO:0048863 GO:GO:0051574 MGI_trans_name:Jarid2-002 PDB:2RQ5 Vega_translation:214399 Vega_translation:OTTMUSP00000054203 goslim_goa:GO:0001071 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0030154 goslim_goa:GO:0034641 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 goslim_goa:GO:0051276 protein_id:AAH03374.1 protein_id:AAH52444.1 protein_id:AAH60695.1 protein_id:BAA06736.1 protein_id:BAC32264.1 protein_id:BAE27780.1 protein_id:BAE37641.1 protein_id:EDL41007.1 OTTP:OTTMUSP00000054203 OTTT:OTTMUST00000096891 Reactome:R-MMU-212165 Reactome:R-MMU-212300 Reactome:R-MMU-74160 UniParc:UPI000000406B
definition	note : transcript_id=ENSMUST00000044608 protein_id : ENSMUSP00000037774 translation : MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNAQKRQHGEGLAGSLKAVNGLLGNAQAKALGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQSQPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQDEEDVEEEDDETEDVKATTNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSAREKEPAHKHRSKEATPGKEKHSEPRADSRREQASGAQPTAASAAASSAKGLAANHQPPPSHRSAQDLRKQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKYTATVTKGTVTYTKAKRELVKETKPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPAASGLKASSRLNPKSCTKEVGGRQLREGLRNSKRRLEEAQQVDKPQSPPKKMKGVAGNAEAPGKKASAASGEKSLLNGHVKKEVPERSLERNRPKRAAAGKNMLGKQAHGKTEGTPCENRSTSQPESSHKPHDPQGKPEKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKYGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKEVLMEKEILEKRKGPLEGHTESDHHKFHSLPRFEPKNGLVHGVTPRNGFRSKLKEVGRAPLKTGRRRLFAQEKEVVKEEEEDKGVLNDFHKCIYKGRSVSLTTFYRTARNIMNMCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSILRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQGNGTPGLQMLESNVMISPEVLCKKGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYNVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDELRDTELRQRRLLFEAGLHSSARYGSHDGNSTVADGKKKPRKWLQLETSERRCQICQHLCYLSMVVQENENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKVSGKHGGIENCLNKPTPKRGPRKRATVDVPPSRLPSS

name	Jarid2 (ENSMUSG00000038518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Jarid2-007 Vega_transcript:OTTMUST00000096892 Uniprot/SPTREMBL:G3UZW3 EMBL:AC166074 EMBL:AC170597 GO:GO:0000122 GO:GO:0001889 GO:GO:0003677 GO:GO:0005515 GO:GO:0005634 GO:GO:0008285 GO:GO:0035098 GO:GO:0042127 GO:GO:0045892 GO:GO:0048536 GO:GO:0048538 MGI_trans_name:Jarid2-007 Vega_translation:214400 Vega_translation:OTTMUSP00000054204 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 OTTP:OTTMUSP00000054204 OTTT:OTTMUST00000096892 UniParc:UPI00021CF768
definition	note : transcript_id=ENSMUST00000173367 protein_id : ENSMUSP00000134658 translation : MMPPKCPLLATMLVLQILKKGRRGKGSPALPNSMVYFGSSQDEEDVEEEDDETEDVKATTNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSAREKEPAHKHRSKEATPGKEKHSEPRADSRREQASGAQPTAASAAASSAKGLAANHQPPPSHRSAQDLRKQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKYTATVTKGTVTYTKAKRELVKETKPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPAASGLKASSRLNPKSCTKEVGGRQLREGLRNSKRRLEEAQQVDKPQSPPKKMKGVAGNAEAPGKKASAASGEKSLLNGHVKKEVPERSLERNRPKRAAAGKNMLGKQAHGKTEGTPCENRSTSQPESSHKPHDPQGKPEKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKYGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGITMDELPLI

name	Jarid2 (ENSMUSG00000038518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS36646.1 Uniprot/SWISSPROT:Q62315 RefSeq_peptide:NP_001191972 RefSeq_mRNA:NM_001205043.1 RefSeq_mRNA_predicted:XM_006516855.2 RefSeq_mRNA_predicted:XM_006516856.2 RefSeq_peptide_predicted:XP_006516918.1 RefSeq_peptide_predicted:XP_006516919.1 RefSeq_peptide_predicted:XP_006516921.1 Vega_transcript:Jarid2-001 Vega_transcript:OTTMUST00000096894 UCSC:uc007qgu.2 Fantom:B130048B16 Fantom:C530046H17 Fantom:M421020G19 EMBL:AK045214 EMBL:AK147226 EMBL:AK164134 EMBL:BC003374 EMBL:BC052444 EMBL:BC060695 EMBL:CH466546 EMBL:D31967 GO:GO:0000122 GO:GO:0000977 GO:GO:0001227 GO:GO:0001889 GO:GO:0003677 GO:GO:0003682 GO:GO:0005515 GO:GO:0005634 GO:GO:0005634 GO:GO:0006351 GO:GO:0008285 GO:GO:0016568 GO:GO:0031061 GO:GO:0035097 GO:GO:0035098 GO:GO:0035098 GO:GO:0042127 GO:GO:0045892 GO:GO:0048536 GO:GO:0048538 GO:GO:0048863 GO:GO:0051574 MGI_trans_name:Jarid2-001 PDB:2RQ5 Vega_translation:214401 Vega_translation:OTTMUSP00000054205 goslim_goa:GO:0001071 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0030154 goslim_goa:GO:0034641 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 goslim_goa:GO:0051276 protein_id:AAH03374.1 protein_id:AAH52444.1 protein_id:AAH60695.1 protein_id:BAA06736.1 protein_id:BAC32264.1 protein_id:BAE27780.1 protein_id:BAE37641.1 protein_id:EDL41007.1 OTTP:OTTMUSP00000054205 OTTT:OTTMUST00000096894 Reactome:R-MMU-212165 Reactome:R-MMU-212300 Reactome:R-MMU-74160 UniParc:UPI000000406B
definition	note : transcript_id=ENSMUST00000173246 protein_id : ENSMUSP00000134205 translation : MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNAQKRQHGEGLAGSLKAVNGLLGNAQAKALGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQSQPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQDEEDVEEEDDETEDVKATTNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSAREKEPAHKHRSKEATPGKEKHSEPRADSRREQASGAQPTAASAAASSAKGLAANHQPPPSHRSAQDLRKQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKYTATVTKGTVTYTKAKRELVKETKPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPAASGLKASSRLNPKSCTKEVGGRQLREGLRNSKRRLEEAQQVDKPQSPPKKMKGVAGNAEAPGKKASAASGEKSLLNGHVKKEVPERSLERNRPKRAAAGKNMLGKQAHGKTEGTPCENRSTSQPESSHKPHDPQGKPEKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKYGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKEVLMEKEILEKRKGPLEGHTESDHHKFHSLPRFEPKNGLVHGVTPRNGFRSKLKEVGRAPLKTGRRRLFAQEKEVVKEEEEDKGVLNDFHKCIYKGRSVSLTTFYRTARNIMNMCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSILRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQGNGTPGLQMLESNVMISPEVLCKKGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYNVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDELRDTELRQRRLLFEAGLHSSARYGSHDGNSTVADGKKKPRKWLQLETSERRCQICQHLCYLSMVVQENENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKVSGKHGGIENCLNKPTPKRGPRKRATVDVPPSRLPSS

name	Jarid2 (ENSMUSG00000038518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Jarid2-014 Vega_transcript:OTTMUST00000096898 Uniprot/SPTREMBL:G3UYY7 UCSC:uc007qgt.2 EMBL:AC166074 EMBL:AC170597 GO:GO:0000122 GO:GO:0001889 GO:GO:0003677 GO:GO:0005515 GO:GO:0005634 GO:GO:0008285 GO:GO:0035098 GO:GO:0042127 GO:GO:0045892 GO:GO:0048536 GO:GO:0048538 MGI_trans_name:Jarid2-014 Vega_translation:214403 Vega_translation:OTTMUSP00000054207 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 OTTP:OTTMUSP00000054207 OTTT:OTTMUST00000096898 UniParc:UPI00021CF76A
definition	note : transcript_id=ENSMUST00000172977 protein_id : ENSMUSP00000134276 translation : MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNAQKRQHGEGLAGSLKAVNGPGCKHKGSLLNLSRIVPAQLQ

name	Jarid2 (ENSMUSG00000038518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Jarid2-006 Vega_transcript:OTTMUST00000096901 Uniprot/SPTREMBL:G3UZT8 UCSC:uc007qgv.1 EMBL:AC166074 EMBL:AC170597 GO:GO:0000122 GO:GO:0001889 GO:GO:0003677 GO:GO:0005515 GO:GO:0005634 GO:GO:0008285 GO:GO:0035098 GO:GO:0042127 GO:GO:0045892 GO:GO:0048536 GO:GO:0048538 MGI_trans_name:Jarid2-006 Vega_translation:214404 Vega_translation:OTTMUSP00000054208 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 OTTP:OTTMUSP00000054208 OTTT:OTTMUST00000096901 UniParc:UPI00021CF76B
definition	note : transcript_id=ENSMUST00000173906 protein_id : ENSMUSP00000134630 translation : MAAPRVCQVQFLVAYLEEPGIEGLLGNAQAKALGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQSQPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQDEEDVEEEDDETEDVKATTNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSAREKEPAHKHRSKEATPGKEKHSEPRADSRREQASGAQPTAASAAASSAKGLAANHQPPPSHRSAQDLRKQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKYTATVTKGTVTYTKAKRELVKETKPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPAASGLKASSRLNPKSCTKEVGGRQLREGLRNSKRRLEEAQQVDKPQSPPKKMKGVAGNAEAPGKKASAASGEKSLLNGHVKKEVPERSLERNRPKRAAAGKNMLGKQAHGKTEGTPCENRSTSQPESSHKPHDPQGKPEKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKYGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKEVLMEKEILEKRKGPLEGHTESDHHKFHSLPRFEPKNGLVHGVTPRNGFRSKLKEVGRAPLKTGRRRLFAQEKEVVKEEEEDKGVLNDFHKCIYKGRSVSLTTFYRTARNIMNMCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSILRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQGNGTPGLQMLESNVMISPEVLCKKGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYNVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAE

name	Jarid2 (ENSMUSG00000038518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Jarid2-008 Vega_transcript:OTTMUST00000096902 Uniprot/SPTREMBL:G3UZ12 EMBL:AC166074 EMBL:AC170597 GO:GO:0000122 GO:GO:0001889 GO:GO:0003677 GO:GO:0005515 GO:GO:0005634 GO:GO:0008285 GO:GO:0035098 GO:GO:0042127 GO:GO:0045892 GO:GO:0048536 GO:GO:0048538 MGI_trans_name:Jarid2-008 Vega_translation:214405 Vega_translation:OTTMUSP00000054209 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 OTTP:OTTMUSP00000054209 OTTT:OTTMUST00000096902 UniParc:UPI00021CF76C
definition	note : transcript_id=ENSMUST00000173003 protein_id : ENSMUSP00000134302 translation : MAAPRVCQVQFLVAYLEEPGIEGPGCKHKGSLLNLSRIVPAQLQ

name
type	misc_feature
link
xref
definition	note : contig AC166074.3 23390..224712(1)

name	Jarid2 (ENSMUSG00000038518)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000096893 Vega_transcript:OTTMUST00000096893 MGI_trans_name:Jarid2-016 OTTT:OTTMUST00000096893
definition	note : processed_transcript note : transcript_id=ENSMUST00000172708

name	Jarid2 (ENSMUSG00000038518)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000096896 Vega_transcript:OTTMUST00000096896 MGI_trans_name:Jarid2-004 OTTT:OTTMUST00000096896
definition	note : retained_intron note : transcript_id=ENSMUST00000174557

name	Jarid2 (ENSMUSG00000038518)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000096897 Vega_transcript:OTTMUST00000096897 MGI_trans_name:Jarid2-005 OTTT:OTTMUST00000096897
definition	note : retained_intron note : transcript_id=ENSMUST00000174683

name	Jarid2 (ENSMUSG00000038518)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000096899 Vega_transcript:OTTMUST00000096899 MGI_trans_name:Jarid2-010 OTTT:OTTMUST00000096899
definition	note : processed_transcript note : transcript_id=ENSMUST00000172924

name	Jarid2 (ENSMUSG00000038518)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000096900 Vega_transcript:OTTMUST00000096900 MGI_trans_name:Jarid2-012 OTTT:OTTMUST00000096900
definition	note : processed_transcript note : transcript_id=ENSMUST00000172581

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Jarid2 (ENSMUSG00000038518)
Transcript ID	ENSMUST00000173003

Reports
substitution
cSNPs	0
Insertion	42
Deletion	44
SNPs	-1kb 44836023(c.-4791C>A), 44836558(c.-4256G>A), 44836602(c.-4212A>C), 44836817(c.-3997G>T), 44836840(c.-3974A>G), 44836911(c.-3903C>G), 44836966(c.-3848T>C), 44837099(c.-3715A>G), 44837192(c.-3622G>C), 44837210(c.-3604G>A), 44837212(c.-3602C>A), 44837242(c.-3572T>A), 44837354(c.-3460T>C), 44837759(c.-3055G>C), 44837800(c.-3014T>G), 44837982(c.-2832T>C), 44838060(c.-2754A>G), 44838076(c.-2738C>T), 44838079(c.-2735A>G), 44838283(c.-2531T>C), 44838287(c.-2527A>G), 44838300(c.-2514C>A), 44838677(c.-2137C>A), 44838773(c.-2041C>T), 44838789(c.-2025T>C), 44839269(c.-1545T>C), 44839627(c.-1187A>G), 44839782(c.-1032A>C), 44839817(c.-997G>C), 5'UTR CDS 3'UTR INTRON 44841273(c.67+393T>G), 44841601(c.67+721G>A), 44841808(c.67+928C>T), 44842504(c.67+1624G>C), 44842580(c.67+1700A>C), 44842611(c.67+1731C>T), 44844046(c.67+3166C>T), 44844722(c.67+3842G>T), 44844891(c.67+4011T>A), 44845209(c.67+4329G>A), 44845431(c.67+4551T>C), 44845733(c.67+4853G>A), 44846429(c.67+5549G>A), 44846783(c.67+5903G>A), 44847264(c.67+6384A>G), 44847324(c.67+6444C>T), 44847488(c.67+6608A>G), 44847508(c.67+6628T>C), 44848309(c.67+7429C>T), 44848488(c.67+7608C>T), 44848809(c.67+7929G>A), 44848841(c.67+7961T>A), 44848854(c.67+7974T>C), 44848971(c.67+8091C>T), 44849676(c.67+8796G>A), 44849920(c.67+9040G>T), 44850697(c.67+9817A>G), 44851711(c.67+10831T>G), 44851752(c.67+10872G>T), 44851940(c.67+11060A>G), 44852273(c.67+11393T>C), 44852425(c.67+11545C>T), 44852434(c.67+11554C>T), 44852469(c.67+11589T>G), 44852612(c.67+11732G>T), 44852802(c.67+11922G>A), 44853330(c.67+12450C>T), 44853557(c.67+12677C>T), 44853567(c.67+12687C>G), 44853589(c.67+12709A>T), 44853590(c.67+12710C>A), 44853669(c.67+12789G>C), 44853681(c.67+12801A>G), 44853753(c.67+12873T>C), 44853907(c.67+13027T>G), 44853926(c.67+13046C>T), 44854011(c.67+13131C>A), 44854144(c.67+13264G>C), 44854388(c.67+13508A>G), 44854414(c.67+13534C>T), 44854463(c.67+13583C>T), 44854507(c.67+13627T>G), 44854538(c.67+13658G>A), 44854606(c.67+13726G>A), 44854774(c.67+13894C>T), 44854808(c.67+13928G>A), 44855001(c.67+14121T>C), 44855501(c.67+14621G>C), 44855614(c.67+14734G>T), 44855734(c.67+14854A>G), 44855818(c.67+14938G>A), 44856059(c.67+15179G>A), 44856068(c.67+15188C>T), 44856221(c.67+15341C>T), 44856425(c.67+15545A>G), 44856535(c.67+15655A>G), 44856738(c.67+15858A>C), 44856755(c.67+15875T>A), 44856827(c.67+15947C>T), 44856867(c.67+15987T>C), 44856909(c.67+16029G>T), 44857183(c.67+16303G>T), 44857238(c.67+16358G>T), 44857432(c.67+16552C>T), 44857433(c.67+16553G>T), 44857921(c.68-16362T>C), 44857983(c.68-16300T>C), 44858135(c.68-16148C>G), 44858181(c.68-16102T>C), 44858401(c.68-15882C>T), 44858571(c.68-15712C>T), 44858852(c.68-15431T>A), 44858853(c.68-15430G>T), 44858854(c.68-15429G>T), 44858868(c.68-15415G>A), 44858872(c.68-15411G>A), 44859050(c.68-15233G>A), 44859352(c.68-14931T>C), 44859397(c.68-14886A>G), 44859410(c.68-14873G>A), 44859494(c.68-14789C>T), 44859551(c.68-14732T>C), 44859691(c.68-14592C>A), 44859704(c.68-14579G>A), 44860062(c.68-14221G>C), 44860384(c.68-13899A>T), 44860672(c.68-13611T>C), 44860693(c.68-13590T>G), 44860816(c.68-13467C>T), 44861364(c.68-12919T>C), 44861523(c.68-12760G>A), 44861625(c.68-12658C>T), 44861717(c.68-12566T>G), 44862256(c.68-12027G>A), 44862341(c.68-11942A>C), 44862553(c.68-11730T>G), 44863092(c.68-11191G>T), 44863125(c.68-11158G>A), 44863314(c.68-10969C>T), 44863496(c.68-10787A>G), 44863532(c.68-10751T>C), 44863719(c.68-10564G>A), 44864077(c.68-10206T>C), 44864141(c.68-10142C>T), 44864300(c.68-9983G>A), 44864305(c.68-9978C>T), 44864367(c.68-9916T>G), 44864472(c.68-9811G>A), 44864545(c.68-9738G>A), 44864588(c.68-9695C>G), 44864737(c.68-9546C>T), 44865115(c.68-9168C>T), 44865154(c.68-9129G>A), 44865367(c.68-8916T>G), 44865497(c.68-8786G>T), 44865523(c.68-8760C>T), 44866176(c.68-8107G>A), 44866244(c.68-8039C>T), 44866388(c.68-7895G>C), 44866399(c.68-7884C>A), 44866548(c.68-7735T>C), 44866769(c.68-7514C>T), 44866787(c.68-7496G>A), 44866895(c.68-7388A>C), 44866929(c.68-7354T>C), 44866939(c.68-7344T>C), 44867153(c.68-7130C>T), 44867161(c.68-7122A>C), 44867267(c.68-7016G>A), 44867334(c.68-6949A>T), 44867336(c.68-6947T>G), 44867337(c.68-6946A>T), 44867355(c.68-6928T>C), 44867376(c.68-6907C>A), 44867591(c.68-6692T>C), 44867642(c.68-6641C>A), 44867704(c.68-6579G>A), 44867730(c.68-6553C>T), 44867767(c.68-6516C>T), 44867809(c.68-6474T>C), 44868027(c.68-6256A>G), 44868045(c.68-6238G>A), 44868227(c.68-6056G>T), 44868672(c.68-5611A>C), 44868767(c.68-5516G>A), 44869186(c.68-5097A>G), 44869724(c.68-4559A>G), 44869753(c.68-4530C>T), 44870036(c.68-4247C>T), 44870737(c.68-3546G>A), 44870748(c.68-3535A>C), 44870763(c.68-3520C>T), 44871292(c.68-2991C>T), 44871357(c.68-2926C>T), 44871360(c.68-2923A>G), 44871453(c.68-2830C>G), 44871473(c.68-2810G>A), 44871629(c.68-2654T>G), 44871675(c.68-2608A>G), 44871871(c.68-2412C>G), 44871888(c.68-2395G>C), 44871918(c.68-2365C>A), 44871926(c.68-2357C>T), 44872143(c.68-2140G>C), 44872199(c.68-2084T>G), 44872821(c.68-1462C>T), 44873069(c.68-1214A>C), 44873684(c.68-599G>A), 44873817(c.68-466T>C), 44874510(c.102+58G>A), 44874605(c.102+153T>C), 44874831(c.102+379C>A), 44874886(c.102+434A>C), 44875467(c.102+1015A>T), 44875472(c.102+1020A>T), 44875558(c.102+1106A>C), 44876295(c.102+1843T>C), 44877238(c.102+2786G>A), 44877290(c.102+2838C>A), 44877891(c.102+3439T>G), 44877941(c.102+3489G>T), 44877951(c.102+3499C>T), 44878151(c.102+3699C>T), 44878190(c.102+3738A>G), 44878373(c.102+3921C>A), 44878809(c.102+4357A>C), 44878983(c.102+4531T>C), 44879267(c.102+4815G>C), 44879271(c.102+4819G>C), 44879275(c.102+4823G>C), 44879279(c.102+4827G>C), 44879369(c.102+4917G>T), 44879696(c.103-5008A>C), 44879699(c.103-5005A>T), 44879747(c.103-4957T>A), 44879858(c.103-4846T>A), 44882088(c.103-2616C>T), 44882258(c.103-2446T>C), 44882744(c.103-1960C>A), 44884456(c.103-248A>C), 44885264(c.279+384G>A), 44885397(c.279+517G>A), 44885689(c.279+809C>A), 44885904(c.279+1024T>C), 44885972(c.279+1092G>A), 44886299(c.279+1419T>C), 44886372(c.279+1492G>A), 44886597(c.279+1717T>C), 44886610(c.279+1730T>G), 44886803(c.279+1923C>T), 44887362(c.279+2482C>A), 44887453(c.279+2573G>T), 44887525(c.279+2645G>T), 44888404(c.279+3524T>C), 44888494(c.279+3614C>G), 44888546(c.279+3666T>C), 44889232(c.279+4352G>A), 44889349(c.279+4469C>T), 44889577(c.279+4697C>T), 44889821(c.279+4941C>T), 44890498(c.279+5618A>G), 44890695(c.280-5559G>C), 44891050(c.280-5204G>T), 44891071(c.280-5183G>A), 44891092(c.280-5162A>T), 44891142(c.280-5112G>A), 44891143(c.280-5111C>T), 44892988(c.280-3266C>G), 44893587(c.280-2667A>G), 44893644(c.280-2610A>C), 44893949(c.280-2305T>C), 44894677(c.280-1577T>C), 44894797(c.280-1457T>C), 44894813(c.280-1441T>G), 44894835(c.280-1419T>C), 44895009(c.280-1245T>A), 44895010(c.280-1244A>G), 44895020(c.280-1234A>T), 44895982(c.280-272G>T), +1kb 44896580(c.22230A>G), 44897078(c.22728G>T), 44897483(c.23133C>T), 44897540(c.23190C>A), 44897926(c.23576A>G), 44898239(c.23889A>G), 44898498(c.24148T>C), 44898588(c.24238T>C), 44899133(c.24783G>C), 44899435(c.25085A>G), 44899718(c.25368A>C), 44900500(c.26150A>G), 44900537(c.26187T>A), 44900623(c.26273A>G), 44900979(c.26629T>G), 44901080(c.26730C>T), 44901215(c.26865C>T), 44901272(c.26922C>A), 44901305(c.26955C>T), 44901309(c.26959A>C),
Insertions	-1kb 44835992 (c.-4822_-4821insT), 44836627 (c.-4187_-4186insGAT), 44837970 (c.-2844_-2843insAGTAACTA), 44838992 (c.-1822_-1821insTGAG), 5'UTR CDS 3'UTR INTRON 44846360 (c.67+5480_67+5481insGT), 44851089 (c.67+10209_67+10210insATAT), 44851101 (c.67+10221_67+10222insCC), 44851790 (c.67+10910_67+10911insGCTCCC), 44853590 (c.67+12710_67+12711insTT), 44858836 (c.68-15440dupT), 44863489 (c.68-10793_68-10790dupGTTG), 44864109 (c.68-10173_68-10169dupTCAAT), 44864613 (c.68-9671_68-9670dupTT), 44865664 (c.68-8613dupT), 44866041 (c.68-8240dupA), 44866304 (c.68-7982_68-7979dupTTTT), 44868398 (c.68-5884dupT), 44868513 (c.68-5760dupT), 44868522 (c.68-5760dupT), 44868993 (c.68-5288_68-5287insCTT), 44869735 (c.68-4551_68-4548dupTACC), 44869824 (c.68-4461_68-4459dupGAA), 44870159 (c.68-4123_68-4122insGA), 44870429 (c.68-3853dupT), 44871716 (c.68-2564dupC), 44871719 (c.68-2564dupC), 44871830 (c.68-2453_68-2452insAAA), 44871916 (c.68-2367_68-2366insG), 44871918 (c.68-2365_68-2364insG), 44872927 (c.68-1356_68-1355insC), 44874649 (c.102+198_102+201dupCCAC), 44876525 (c.102+2073_102+2074insG), 44881519 (c.103-3185dupA), 44887425 (c.279+2554dupT), 44887938 (c.279+3060dupG), 44891010 (c.280-5241_280-5240dupTT), 44895683 (c.280-570dupC), 44895863 (c.280-391_280-390insA), 44895870 (c.280-383dupA), +1kb 44898008 (c.23658_23659insTGGG), 44899550 (c.25200_25201insA), 44900947 (c.26597_*26598insTT),
Deletions	-1kb 44836241 (c.-4572_-4570delTTT), 44836665 (c.-4148_-4146delATT), 44836669 (c.-4144_-4142delTTA), 44838739 (c.-2074_-2073delTA), 44839275 (c.-1538_-1537delGC), 44839842 (c.-971_-968delCTCC), 5'UTR CDS 3'UTR INTRON 44842134 (c.67+1267delT), 44842689 (c.67+1821_67+1823delGTT), 44846513 (c.67+5636_67+5641delCCTTTT), 44847443 (c.67+6564_67+6565delAT), 44850927 (c.67+10067delT), 44851085 (c.67+10206_67+10207delGC), 44851448 (c.67+10581_67+10587delGGTAGAA), 44855867 (c.67+15002_67+15005delCCCT), 44857411 (c.67+16532_67+16539delACTCCCCC), 44857566 (c.67+16691_67+16694delTTGT), 44860790 (c.68-13484_68-13481delGTGT), 44861290 (c.68-12982delA), 44863263 (c.68-11013_68-11010delTATT), 44865079 (c.68-9199_68-9196delACAG), 44865264 (c.68-9018_68-9012delCCCTCCT), 44865476 (c.68-8798delT), 44866383 (c.68-7897_68-7894delGGGC), 44866621 (c.68-7659delG), 44866970 (c.68-7310_68-7305delTTTTTT), 44867338 (c.68-6944_68-6939delTAACCA), 44867668 (c.68-6597delT), 44867986 (c.68-6296_68-6295delTT), 44868005 (c.68-6275_68-6268delTGATAAGT), 44868495 (c.68-5787delT), 44870819 (c.68-3438_68-3435delAACA), 44871159 (c.68-3120delT), 44871897 (c.68-2385_68-2384delCA), 44872023 (c.68-2259_68-2252delTTTATTTA), 44873593 (c.68-689_68-685delGTTTT), 44873621 (c.68-650_68-646delTTTTT), 44877028 (c.102+2581_102+2587delTACTGTG), 44879697 (c.103-5004delA), 44881045 (c.103-3650delA), 44881639 (c.103-3060_103-3058delAAA), 44882845 (c.103-1852_103-1851delTC), 44893344 (c.280-2907_280-2906delTC), 44894778 (c.280-1475_280-1474delTT), 44895857 (c.280-396_280-389delTTTTTTTT), +1kb
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000173003)	MAAPRVCQVQFLVAYLEEPGIEGPGCKHKGSLLNLSRIVPAQLQ*
MSMv4 transcript	MAAPRVCQVQFLVAYLEEPGIEGPGCKHKGSLLNLSRIVPAQLQ*
homology	100.00 (45 / 45)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Jarid2 (ENSMUSG00000038518)
Transcript ID	ENSMUST00000173003

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AAAAAAGACAGACAGACAGACAGACAGACAGACACACACACACACACACA CACACACACACTCCCTCCCTCCAGCTACTGGAGGCCAGTTGGATGCCTGCCTTTTTCACC CCTCTCAGCAGCTGCCAGGCTACAGAGCCTGTTTTGTGAAAGATCAAGAAACAATGAGGG AAAACAGCTTCAGCTTGATTAGATTAGATCAATTTATGTGCCTGGGGAGGGGCCTAGGCA GGGCTGGGGGAGGGGTGTCCTGTGCTGGCAGTGGCCCATGCCTGCCCATTCGGTCACTTC ATAAGTAATGAAGCTCCCGTGGTGGCTGGAATTGCAGGAAGGGGGAGGGAGGAGGTGGAG GAGGAGCATGTGAAGAGAGATTTCTGCAGTCTGTCTGGAGAGCTGCCCAGGGTTCCCAGC CAAAAAAACAAACAAAAATAAATAAAAGCCAAGTGCTGAATGACACAGATTATGATATTA AAAAGGGATACTATTGAAACATTGCCCTGTTTCCTACTGTTGTTGGAAATGGGTGTGTGC AGAAGCGAGGGGCGGTTAGTGCACTGTACAACAGGCCATTCCTTGGACACAAAAGTCCGT ACAATTAAATTGTGAATGCCCCTCGCCAACGTCCCCTCCCCCACCTCATGCCAGAAATTC TGTAATTTTGATTTGTCTGCATTGCAGGTCATGGAAATAGCAGGATGGAAAGCTAGTTTC TTTTGCCTTTTCTCATTTTAATTCATCAAAATGGTAAAAAGCGGGGAGGGGGAAAGTCAG CCAGATGCCCCCTCCTTTTCAGTGTTCAATTCTCTTCCAGGCACATAAATAATCTTCTCT CCCGACTGTCTCCCCTCCCCCTTGGCCCCCGCTGGTGTTCGGCTGTCCTATTGCCGCGCG GAATCTGCACTGCCGCTTGCTTATTACGTACAGGGGAGGATTGTTGACAAGTGCTCCGGA GCCTGCCTCACTGCGCTCTCCCTTCCTCCCTCCCTTCCTCTGTCCTTCTT
1	EXON 1	44,840,783	44,840,880	-	1	98	CCTCTGTCTCTGCAATGATCCGGCTCTGAGGATGGCTGCTCCACGGGTCTGTCAGGTGCA GTTTTTGGTGGCTTATCTTGAGGAACCTGGGATAGAAG
	INTRON 1 - 2	44,840,881	44,874,282			33,402	GTCTGTTCCTATAAATAAAAGAAAA..........TTTTACATTTCTTTTGTTGTTGCAG
2	EXON 2	44,874,283	44,874,452	1	-	170	GCCCAGGCTGCAAGCACAAAGGAAGTTTGCTCAATCTCAGCCGAATAGTCCCAGCACAAC TCCAGTGAAGATAGTGGAGCCTTTGCTACCCCCGCCAGCTACTCAAATTTCTGACCTCTC TAAAAGGAAGCCTAAGACAGAAGACTTTCTTACCTTTCTCTGCCTTCGAG
	INTRON 2 - 3	44,874,453	44,884,703			10,251	GTAAGCTTGGAGGACACATGGCACC..........GAACTACATATGTTAAACCCATCAG
3	EXON 3	44,884,704	44,884,880	-	-	177	GTTCTCCTGCGCTGCCCAACAGTATGGTATATTTTGGAAGCTCTCAGGATGAGGAGGATG TCGAAGAGGAAGATGATGAGACGGAAGATGTCAAAGCAACCACCAACAATGCTTCATCTT CGTGCCAGTCAACCCCCAGGAAAGGAAAAACCCATAAGCATGTACACAACGGGCACG
	INTRON 3 - 4	44,884,881	44,896,253			11,373	GTAGGTTCACCGTGGAGGCTGTGTG..........TTCTTCCCTTCTCTTCCTTTTCTAG
4	EXON 4	44,896,254	44,896,481	-	-	228	TTTTCAATGGCTCCAGTAGGTCAGCACGGGAGAAAGAGCCTGCTCACAAACACAGAAGCA AAGAGGCCACTCCGGGGAAGGAGAAGCACAGCGAGCCCAGGGCAGACAGCCGGAGAGAAC AGGCTTCAGGGGCTCAGCCCACGGCCGCCTCGGCTGCGGCTTCCTCTGCCAAGGGACTTG CTGCCAACCACCAACCTCCCCCTTCGCATCGGTCTGCTCAGGACTTAC
	3' upstream sequence						GGAAACAGGTAACCCTCAGTGAGGGCCTTTCTAGTGTCCCACAGAAGGCCCAGTTTATTA ATCAAGGTGAATTCAGGCTGACCGAGCTGGAAAAGTAGGGCATGATTGGACAGAGATCAC ATGAGGTGTCTCTCTTACCCTGGGAGGATCCAGATCTGGCCTCCCTTTCTTTCCTGGATA GCTTGAGCTTACACAGTATTCACATACCAAGTGCTGCTCCCCCTCCAATCATTGCTCCTC TTCTCTTCTGAGAGGGCACCTCCCATCCCCTTCCTAGCTCATCAAGTCTGTGCTGGATTA GGCACATATTTCCCACTGAGGGCATCCAAGGCAGCCAAGGATACTGAGCTGAATACTACA CAGCTTAGTTTTGTGCATGAGATAAAATGGATGGAGACTAAAGATAGACTAGTTTCTAGT GAAGCAGGCATATAAAATATTATTTCCTTGTCTTTGTGTAAAATTATACACTAATGCACA ACACAGGTCATCCTTTCATAATTTTATTTTTATTTTATGTGAATTTGTGTTTTGCCTGCA TGTATACATGTTAGGGTCTCAAATACCCTGGAAGTAGATCCTGGGAATTGAACCTGTGTC CTCTTGAAGAATGTCAGTGCTCTTAACCACTGAGCCATCTCTTCTGCTCCTAACACAGGC CACCTTAAGACTAGAAATTAGATTTGTGTTTCAAATTAGTTGTGTATCCAGATTATTTAC TTCTTGTTCCAGTGATTCATGAAGTGTCTCATAATCAAGGATACATGGTTTATTTTACAT TTACCTAGGAACATTGCTGCTCCTCTCCATTAATCGTGTCTCTTCTTCGGCACTCCATAT CTCAGCAGTAATGAGTGTCATTATGGAAGTAGCTTGGGGGTGTAGAGCAAGTACCATTTG GCCTGGGGTGTCTTTGCCCACTGTTCCATGGTGGTTACATACTAGCTGATCTATATCAGA GTCTAGGGTATTGGAGGGAGGCAAGTCGTCTATTGCTGTT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Jarid2 (ENSMUSG00000038518)
Transcript ID	ENSMUST00000173003

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 45 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information