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Target CDS Information

Gene Symbol (Gene ID) Npas2 (ENSMUSG00000026077)
Cross Reference
EMBL AC132571, AC142106
GO GO:0003677, GO:0005634, GO:0005667, ...show all
goslim_goa GO:0003674, GO:0003677, GO:0005575, ...show all
MGI_trans_name Npas2-002
OTTP OTTMUSP00000052907
OTTT OTTMUST00000094904
UniParc UPI00021CF75D
Uniprot/SPTREMBL G3UYV8
Vega_transcript Npas2-002, OTTMUST00000094904
Vega_translation 179086, OTTMUSP00000052907
Definition protein_id:ENSMUSP00000134241
translation:
MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHN

Chromosome 1
Length
Position(start - end)
24,270
39,263,344 - 39,287,615
Orient to Chromosome plus
Link Location : (1:39263344-39287615)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Npas2 (ENSMUSG00000026077)
Transcript ID ENSMUST00000173050
Reports
substitution
cSNPs0
Insertion70
Deletion83
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000173050)
MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHN
MSMv4 transcript
MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHN
homology100.00 (60 / 60)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Npas2 (ENSMUSG00000026077)
Transcript ID ENSMUST00000173050
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CTGTGTTCTTGCGCGCGCCGCTCTCTACAGCTTCTCTTTTTCTTGGATTC
TCGCCTGTCTCCTCCCACAGGAAAAAAAAAAAAGGTCACGTATGTTTGGAAAAATATGTA
GGTCAGTGGAACATTTCCTGCACTGGTGCAAAAGGAGAGAGGGCAGTGGGGGCGGGGAGG
GAGAGGCCCGGCGCTGCTCCTAGGGCGCCTCCTGGCCGCAGCCCCCGACCTGCGGCCCTG
GGGTTACAAGGGGACATTTAGCGGGTTCTTGCCGATCCTTGACCCATTTTCCTGACCAGT
TAAGCTCGCCCTGGAGGAGGCACCGAGCGTTCCTCCCTAGCAACCGCTGCTATATTCCAC
GAACAGCGTTCACTCTCACATCCCAGGACCCTTCTTCTCACCTGGTGTTCCCTCACCCAC
CCACGTCCCCAGTAACCTGAGTCACGGAAGCGCAGAGGCCTGCCCTTAGAGGTCGGCGTG
GGCGAGGGGGACAAGACAATCACATTCTAGCAAACACCCCCACCCCGTGACAGCACAGTG
GCAGTGGGCACTGAGATGATTCCCATTTACCCGGGGCACGGATTCTTTGCTACCCCCCTA
GTGACAACTTTAGCAGGACCCTGGCCGGCAGCTCCTCAAATGTCAAGCTCGCCTCCCCTC
TTCCAGGTTCCGTACTAAGCACAGTCTCCCCCTTCCACCGCGCCCAGTCCGGACCAGACT
GGCCGGACCCCCACGTCGATACCCCCACACCCCCCTCCCCAAGCAGCCCCGCAGGACTCG
CAGAGGCCCTGGGGGCGCACCGGTGTCTGCCCCGCCGAGAGTCGCCGGGGGGTCGCAGGG
TCCGCGTCCCTGCGGCACGCGCTGAGTGCGCGGCTCACACTGGGTTTGGACCGTAGGGGG
GTGGGGGGAGCGGGTAGCCGCCGGAGCCTGGAGGCTTAAGAGGAAGAGGAGGAGGAGGAG
GAGGAAGGAGAGCGGGAGGAGGAGGAGAAAGAGAAGAGGGAGGAGGAGGA
1 EXON 1 39,193,731 39,194,009 - - 279
GGCGGCAGCGGGGCGGGGAGGTGGCGGCGGTCCCCAGCTCTACGCGCCCAAGAGTTTGCG
GCGCGAGCGGCGGGCTTTTCCGCAGGACCCGAGGGACCCGCGCAGCGGCCGCGGAGCCCC
GAGACCCCGGCGGCAGCGGCGAGAGCAGCGCCTCCCGCCGCCGCCCGGGAGAAGCTCCCC
GAGCCCGCCTGCCGCCCCGGCTCCCCGCGGCGGCGGGAGGCGCGTCTCCCCGGCCCAGTC
GGTGCCCGGCCTGGCGGGGCCGCCCCGGCCCGCTCGGAG
INTRON 1 - 2 39,194,010 39,263,318 69,309
GTAAGAGGCCACCGCGCTTGGGGAC..........AGATTCCTTTTTCTGTTTTATTTAG
2 EXON 2 39,263,319 39,263,375 - 2 57
CAGGCAAGACTGCATAGAAACTCTAATGGACGAAGATGAGAAGGATAGAGCAAAGAG
INTRON 2 - 3 39,263,376 39,287,467 24,092
GTGAGTGAAGACTGCCCCTGCCTCA..........TAACCTGTGCCTTGTGTGTTCCCAG
3 EXON 3 39,287,468 39,287,615 2 - 148
AGCCTCTCGAAATAAGTCTGAGAAGAAGCGTCGGGACCAGTTCAATGTTCTCATCAAAGA
GCTCAGCTCCATGCTCCCTGGTAACACTCGGAAAATGGACAAAACCACCGTGCTGGAGAA
GGTCATCGGATTCTTGCAGAAACACAAT
3' upstream sequence
GGTAAAGGCCGTGTGCGCGTGCTTCTTGGCATCTCTGTCCCGCCCTACCCTTCCTGCAGG
TGATGAGTCCATCAGGCAGTCAATCCCCATGAGCCCACCATTAGGAAGGTCACCCTCATC
CCTCATGGGCTCTCCTCCAAAGGCTCTGGACCTGCCCCAAAAGCCCCATGCCTAGCAGGT
TGGGGGGAAGACAGCTATTCCCCAAAAATGCTTTATCAGCCTTAGGAGCGCCTCAAGAGC
CCACAGCCTGCACAGGTGGCATTCACCATGAGTTTGTCATTGTCATAATCCCCAGGAACT
CATCCAGGACCTGCCCCTCTCTGTCTTTTCCCAAATGTGACATCTGTTCTGACTACACAC
TTGAAGCTGTGTGTCCTTGGGGATTTTAGTCAGCTGAAATCATGCAGGTCACTCATGGCC
CTCCTCCCCTGTCACTGGCAGATTCTGTCCTGTCACTTGACGTTACCACATGACGCTATC
CAGGAATGCATGTCTTCCGCAGACTGTATTCCTCCCCACCCCCCACCCCCCCCCCCGGTG
CTTTTTTTCCCTGTATGCAGATCTCATACTTAGGGTGCCACTGGCTTTGAACAGTATCCA
AGTGCAACAGTGGCAAAAATAAATAGTCTGGGGAAGGGCAGGAGAGATAGCTCAGTGGTT
AAGAGCACTGACTGCTCTTCCCGAGGTTCTGAGTTCAATTCCCAGCAACCACATGGTGGC
TCGCAACCATAATAGGATCCGATGCCCTCTTCCCGTGTGTCTGAAGACAGCTACAGTATA
CTCATATACATAAAATAAATAACTAAATCTTTTTTTTAAAGAGTCTGGGGAAGACCACAC
AAGCAGAGTTGCAATAGTCATCACTGTGATCATTTAATCAGAGTGCTTTTATTTCCTAAG
TAACATTTTAGCCAAGTGAAATAGCAGGTGGTTTGATTGCCAAGATATTTTGTGCAAATT
ACTCAAACTAGGTCAGTGCCACAGAAGCAGGACAGCTGTT..........

Sequence Detail Report

Gene Symbol (Gene ID) Npas2 (ENSMUSG00000026077)
Transcript ID ENSMUST00000173050
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 60 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information