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Target CDS Information

Gene Symbol (Gene ID) Kcnq5 (ENSMUSG00000028033)
Cross Reference
EMBL AC110269, AC115920, AC125483, ...show all
GO GO:0005249, GO:0005251, GO:0006813, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005623, ...show all
MGI_trans_name Kcnq5-006
OTTP OTTMUSP00000054908
OTTT OTTMUST00000097898
UCSC uc007alq.2
UniParc UPI00021CF747
Uniprot/SPTREMBL G3UYP4
Vega_transcript Kcnq5-006, OTTMUST00000097898
Vega_translation 178827, OTTMUSP00000054908
Definition protein_id:ENSMUSP00000134166
translation:
MPRHHAGGEEGGAAGLWVRSGAAAAAGAGGGRPGSGMKDVESGRGRVLLNSAAARGDGLL
LLGTRAAALGGGGGGLRESRRGKQGARMSLLGKPLSYTSSQSCRRNVKYRRVQNYLYNVL
ERPRGWAFVYHAFVFLLVFGCLILSVFSTIPEHTKLASSCLLILEFVMIVVFGLEFIIRI
WSAGCCCRYRGWQGRLRFARKPFCVIDTIVLIASIAVVSAKTQGNIFATSALRSLRFLQI
LRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFSSFLVYLVEKDANKEFSTYA
DALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSGFALKVQEQHR
QKHFEKRRNPAANLIQCVWRSYAADEKSVSIATWKPHLKALHTCSPTKKEQGEASSRIMK
FHVAKRKFKETLRPYDVKDVIEQYSAGHLDMLCRIKSLQTRVDQILGKGQMTSDKKSREK
ITAEHETTDDPSMLARVVKVEKQVQSIESKLDCLLDIYQQVLRKGSASALTLASFQIPPF
ECEQTSDYQSPVDSKDLSGSAQNSGCLTRSASANISRGLQFILTPNEFSAQTFYALSPTM
HSQATQVPMSQNDGSSVVATNNIANQISAAPKPAAPTTLQIPPPLSAIKHLSRPEPLLSN
PTGLQESISDVTTCLVASKESVQFAQSNLTKDRSLRKSFDMGGETLLSVRPMVPKDLGKS
LSVQNLIRSTEELNLQFSGSESSGSRGSQDFYPKWRESKLFITDEEVGAEETETDTFDGT
PPPAGEAAFSSDSLRTGRSRSSQNICKTGDSTDALSLPHVKLN

Chromosome 1
Length
Position(start - end)
559,417
21,402,163 - 21,961,581
Orient to Chromosome minus
Link Location : (1:21402163-21961581)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Kcnq5 (ENSMUSG00000028033)
Transcript ID ENSMUST00000173058
Reports
substitution
cSNPs8
Insertion319
Deletion426
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num8
non-synonymous num0
synonymous substitutions 21402391 (p.Ser748Ser), 21402814 (p.Val607Val), 21403036 (p.Ala533Ala), 21479461 (p.Leu347Leu), 21505351 (p.Lys290Lys), 21505393 (p.Leu276Leu), 21505396 (p.Phe275Phe), 21961218 (p.Arg122Arg),
non-synonymous substitutions
B6 transcript
(ENSMUST00000173058)
MPRHHAGGEEGGAAGLWVRSGAAAAAGAGGGRPGSGMKDVESGRGRVLLNSAAARGDGLL
LLGTRAAALGGGGGGLRESRRGKQGARMSLLGKPLSYTSSQSCRRNVKYRRVQNYLYNVL
ERPRGWAFVYHAFVFLLVFGCLILSVFSTIPEHTKLASSCLLILEFVMIVVFGLEFIIRI
WSAGCCCRYRGWQGRLRFARKPFCVIDTIVLIASIAVVSAKTQGNIFATSALRSLRFLQI
LRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFSSFLVYLVEKDANKEFSTYA
DALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSGFALKVQEQHR
QKHFEKRRNPAANLIQCVWRSYAADEKSVSIATWKPHLKALHTCSPTKKEQGEASSRIMK
FHVAKRKFKETLRPYDVKDVIEQYSAGHLDMLCRIKSLQTRVDQILGKGQMTSDKKSREK
ITAEHETTDDPSMLARVVKVEKQVQSIESKLDCLLDIYQQVLRKGSASALTLASFQIPPF
ECEQTSDYQSPVDSKDLSGSAQNSGCLTRSASANISRGLQFILTPNEFSAQTFYALSPTM
HSQATQVPMSQNDGSSVVATNNIANQISAAPKPAAPTTLQIPPPLSAIKHLSRPEPLLSN
PTGLQESISDVTTCLVASKESVQFAQSNLTKDRSLRKSFDMGGETLLSVRPMVPKDLGKS
LSVQNLIRSTEELNLQFSGSESSGSRGSQDFYPKWRESKLFITDEEVGAEETETDTFDGT
PPPAGEAAFSSDSLRTGRSRSSQNICKTGDSTDALSLPHVKLN*
MSMv4 transcript
MPRHHAGGEEGGAAGLWVRSGAAAAAGAGGGRPGSGMKDVESGRGRVLLNSAAARGDGLL
LLGTRAAALGGGGGGLRESRRGKQGARMSLLGKPLSYTSSQSCRRNVKYRRVQNYLYNVL
ERPRGWAFVYHAFVFLLVFGCLILSVFSTIPEHTKLASSCLLILEFVMIVVFGLEFIIRI
WSAGCCCRYRGWQGRLRFARKPFCVIDTIVLIASIAVVSAKTQGNIFATSALRSLRFLQI
LRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFSSFLVYLVEKDANKEFSTYA
DALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSGFALKVQEQHR
QKHFEKRRNPAANLIQCVWRSYAADEKSVSIATWKPHLKALHTCSPTKKEQGEASSRIMK
FHVAKRKFKETLRPYDVKDVIEQYSAGHLDMLCRIKSLQTRVDQILGKGQMTSDKKSREK
ITAEHETTDDPSMLARVVKVEKQVQSIESKLDCLLDIYQQVLRKGSASALTLASFQIPPF
ECEQTSDYQSPVDSKDLSGSAQNSGCLTRSASANISRGLQFILTPNEFSAQTFYALSPTM
HSQATQVPMSQNDGSSVVATNNIANQISAAPKPAAPTTLQIPPPLSAIKHLSRPEPLLSN
PTGLQESISDVTTCLVASKESVQFAQSNLTKDRSLRKSFDMGGETLLSVRPMVPKDLGKS
LSVQNLIRSTEELNLQFSGSESSGSRGSQDFYPKWRESKLFITDEEVGAEETETDTFDGT
PPPAGEAAFSSDSLRTGRSRSSQNICKTGDSTDALSLPHVKLN*
homology100.00 (824 / 824)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Kcnq5 (ENSMUSG00000028033)
Transcript ID ENSMUST00000173058
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ACGCCACAGTCGCGGCGGAGATTTAAGCAGTTTTATGACTTTCTTTCACT
TACATGGAAATTTCTGGAAGGAGGGAAGTGGGCTCCTTTTCCCAGGCTGCTCTGTCAGGA
GGAGCTCCCTCACCACAAAGGAGCTACTTTGGAGTTTTACGCCCTCCCCACACCCCACCC
CTGGGGATGGGAAGGATGTTCTGCGACTCGCAGGCTTGTTGTCTGAGGCTAGGATGGAAA
GTCACAGCCTGCAGGCTGGATTGAGTCGCGGGAAGCTGCTGGGTCCCTGCCTGGCGCTCT
CCGGGTGTGTCCATTGAACTGCGGTGGGCTGGTCCCCAGCGCGGGAACCCAAACGCCACT
GCCAGAAGCTTAGCCCCCGCTGGGTCGCTCCTAGGCTAGCCAAAACCTGGAGGGTAGGAC
AGAACCTTTCCTGCCCACACCCATCACCCGAGGATGGCAGGACCAGGCGCGGCATAGCAG
CGGGAGAAGCCCAGAGACCCGCTCGTCCAGTTTATTCAAGAGGCAGACTTCGCCCTCCGG
ACAGCTCCGAGTCCCAGGAAGAACCGAACCAAACTCATCCTGGGAGACCGACTTAGGGTC
AAGCCGGTATTCTGCCGGGGTACAGGGGACAGACAGACTCGAACCCTGCTGGGTGTGCAC
GCGTGCGAGCGTGCCTCCGGGCATCCCGCACACCCTCAGTCCCGTGTGCCGACACTCCTC
GGGGAGGAGGGAGTGGCAGCCACCAGACTAAAGGAAAGCGAGGGACACCCCACAAAGTGA
CGCCCCCAACAGGTCCGGATTTGGAATTGGAAGCGGCAGAAATCCGGACCTCCCCGGGCC
TGCTCCGCACACCCCGCCGCCCCCGCCCGGAGCCCCGACTCTCGGCTAGCCCGCCCCCCC
GGGGCGCCCCGTCGGCTGCGGGTTTCCTCCTGCAGACCTGCCCGCGCACATGAAGCCGCT
GCCCCCGCCGCAGGCGCCAGCGCCCCCCTCGCGGTGCCCGTGGTGATGCC
1 EXON 1 21,961,181 21,961,581 - 2 401
ATGCCCCGCCACCACGCGGGAGGAGAGGAGGGCGGTGCCGCCGGGCTCTGGGTGAGGAGC
GGCGCGGCGGCGGCGGCAGGCGCGGGTGGGGGGCGCCCGGGCAGCGGCATGAAGGATGTG
GAGTCCGGCCGCGGCAGGGTGCTGCTGAACTCGGCGGCCGCCAGGGGCGACGGCCTGCTG
TTGCTCGGCACCCGCGCGGCGGCGCTCGGCGGAGGCGGCGGCGGCTTGAGAGAGAGCCGC
CGGGGCAAGCAGGGGGCCCGAATGAGCCTGCTGGGGAAGCCGCTCTCCTACACCAGCAGC
CAGAGCTGTCGGCGCAACGTCAAGTACCGGCGGGTGCAGAACTATCTGTACAACGTGCTG
GAGAGACCCCGCGGCTGGGCGTTCGTCTACCACGCGTTCGT
INTRON 1 - 2 21,593,615 21,961,180 367,566
GTGAGTACCCGCGCCCCCACTTCCG..........AAACTTCTCTTCTGTTATTTTGCAG
2 EXON 2 21,593,524 21,593,614 2 0 91
TTTTCTCCTTGTGTTTGGTTGCTTGATTTTGTCAGTGTTTTCTACCATCCCTGAGCATAC
AAAATTGGCTTCAAGTTGCCTCTTAATTCTG
INTRON 2 - 3 21,535,188 21,593,523 58,336
GTAAGTGAAAATATGTAGTTATATA..........TGACATGTCTGTTCTGATATCTTAG
3 EXON 3 21,535,061 21,535,187 0 1 127
GAGTTCGTGATGATCGTTGTCTTTGGCTTGGAGTTCATCATTCGAATCTGGTCTGCAGGT
TGCTGTTGTCGTTATAGAGGATGGCAAGGAAGACTGAGGTTTGCTCGAAAACCATTCTGT
GTAATAG
INTRON 3 - 4 21,505,860 21,535,060 29,201
GTGAGTATCAAAGTCCAGAATTTAT..........GGCTGTCTCAACCTGTTTCTTGCAG
4 EXON 4 21,505,684 21,505,859 1 0 176
ATACCATTGTTCTCATCGCTTCAATAGCAGTTGTCTCTGCAAAAACTCAGGGTAATATTT
TCGCCACGTCAGCGCTCAGAAGTCTCCGGTTCCTACAGATCCTGCGTATGGTGCGCATGG
ACAGAAGGGGAGGGACCTGGAAGCTGCTCGGCTCTGTGGTTTATGCTCACAGCAAG
INTRON 4 - 5 21,505,426 21,505,683 258
GTAAAAGTGCGCTCTCTGCACCGTA..........AATGTTTCATTCCGTTTATACCTAG
5 EXON 5 21,505,300 21,505,425 0 0 126
GAATTAATCACAGCCTGGTACATTGGATTCCTAGTTCTTATTTTTTCATCCTTCCTTGTC
TATCTTGTGGAAAAAGATGCCAATAAAGAGTTTTCGACATATGCGGATGCTCTCTGGTGG
GGCACA
INTRON 5 - 6 21,487,334 21,505,299 17,966
GTAAGTATAAAAATCTGTTTTTATC..........GATGTTCTGTTGACTTTGTTTCCAG
6 EXON 6 21,487,223 21,487,333 0 0 111
ATCACACTGACAACCATTGGCTATGGAGACAAAACACCCCTAACGTGGCTGGGAAGACTG
CTCTCTGCAGGCTTCGCACTCCTTGGCATTTCTTTCTTTGCACTTCCTGCT
INTRON 6 - 7 21,479,470 21,487,222 7,753
GTGAGTATCCTCTTAACAAAGCTGC..........GCTACTATTTTGTATTTTGTTCCAG
7 EXON 7 21,479,374 21,479,469 0 0 96
GGCATTCTCGGCTCAGGTTTTGCATTAAAAGTACAGGAGCAGCACCGCCAGAAGCATTTT
GAGAAAAGAAGGAACCCAGCTGCCAACCTCATCCAG
INTRON 7 - 8 21,469,565 21,479,373 9,809
GTATATCCATGTCAGCGTGGGAGGC..........TTATGCTCCTGGGTGCCGCATGCAG
8 EXON 8 21,469,470 21,469,564 0 2 95
TGTGTCTGGCGTAGTTATGCAGCTGATGAAAAATCTGTTTCCATTGCAACCTGGAAGCCA
CATCTGAAGGCCTTGCACACCTGCAGCCCTACCAA
INTRON 8 - 9 21,466,410 21,469,469 3,060
GTAGGTATCAGTGGGGCAGCTGGTG..........CTCTTCTGTCTGCACGCACCTGAAG
9 EXON 9 21,466,383 21,466,409 2 2 27
GAAAGAACAAGGGGAGGCATCAAGCAG
INTRON 9 - 10 21,405,925 21,466,382 60,458
GTTTGTGAGCTCTCTTCTGCTACAT..........TAATATTCACTATGTATTGATACAG
10 EXON 10 21,405,793 21,405,924 2 2 132
AATTATGAAGTTTCATGTTGCAAAGCGGAAGTTTAAGGAAACATTACGCCCATATGATGT
AAAAGATGTCATTGAACAATACTCTGCTGGTCACCTGGACATGCTTTGTAGAATAAAAAG
CCTTCAGACACG
INTRON 10 - 11 21,405,059 21,405,792 734
GTAAGCAATGGGCATGGAAACTATC..........ACCAGAAATCTTCTTTGTCTGGCAG
11 EXON 11 21,404,932 21,405,058 2 0 127
CGTTGATCAAATTCTTGGAAAAGGACAAATGACGTCAGATAAGAAGAGCCGAGAGAAAAT
AACAGCAGAACACGAGACAACAGATGACCCCAGCATGCTCGCCCGGGTTGTGAAGGTTGA
GAAACAG
INTRON 11 - 12 21,403,126 21,404,931 1,806
GTAGGGCTCAGCCCCACTTTCAGCT..........GTCTAACTATTCTCTCCGCTTCCAG
12 EXON 12 21,402,163 21,403,125 0 - 963
GTCCAGTCCATCGAATCCAAGCTGGACTGCCTGCTGGATATCTATCAACAGGTCCTCCGG
AAAGGCTCTGCCTCCGCCCTCACTCTGGCTTCCTTTCAGATCCCGCCTTTTGAATGTGAA
CAGACCTCTGACTATCAAAGTCCTGTGGATAGCAAAGACCTGTCTGGCTCAGCACAAAAC
AGCGGCTGTTTAACGAGGTCAGCCAGTGCCAACATCTCAAGAGGCCTGCAGTTCATCCTA
ACACCAAATGAGTTCAGTGCTCAGACTTTCTATGCGCTTAGCCCTACTATGCACAGCCAA
GCTACCCAGGTGCCCATGAGTCAAAATGACGGCTCCTCCGTGGTAGCCACCAATAACATT
GCAAACCAAATAAGCGCCGCACCCAAGCCAGCAGCCCCAACAACTTTACAGATCCCTCCT
CCTCTCTCGGCCATCAAGCACTTGTCCAGGCCAGAACCTCTGCTCTCAAACCCCACCGGC
TTACAAGAGAGTATTTCTGATGTCACCACCTGCCTTGTTGCCTCCAAGGAAAGTGTTCAG
TTTGCACAGTCAAACCTGACCAAGGACCGTTCCCTGAGGAAAAGTTTCGACATGGGAGGA
GAAACTCTGTTGTCTGTCCGCCCCATGGTGCCCAAGGATTTGGGCAAATCTCTGTCTGTA
CAAAACCTGATCAGGTCGACAGAAGAACTGAACTTACAGTTTTCAGGCAGCGAGTCAAGC
GGCTCTCGAGGCAGCCAAGATTTTTATCCCAAGTGGAGAGAATCCAAATTGTTTATAACT
GATGAGGAGGTCGGTGCCGAAGAGACAGAAACAGATACTTTTGACGGCACCCCACCGCCT
GCGGGGGAGGCTGCTTTCTCATCAGACTCTCTAAGGACTGGAAGGTCACGGTCATCTCAG
AACATTTGTAAGACAGGAGACAGTACAGACGCCCTCAGTTTGCCTCACGTCAAACTGAAC
TAA
3' upstream sequence
GTTCTTTGTTTCCTTTCTAAGCATAGCTGTTCTTTTAGCCATACATATCACTGCATGAAG
TACTCTGGAAGCCCGTCTATAGAGTTGAAATCGCACAAGAGTCAGGAAGAACGCGAAAGG
CCATTTATAAGCCTGTTATCTTTTAATTGCATGAAAATGCATGTTTAGGGGTGGCAGAAA
TTCCAAGGTACATCGACATTAATCCATGCATTTAATAACGTACCTTGAGTCTAAAATCCC
AAGCCAACAGTCGCTGCTGATGCTATGGGGTGTGTGAAGATGCCGGGATATTAGTTCAAT
TGCAAGAGTTGACGCTGTGTTTTGAAATTGTGAAAGTAAACACCTTCAAATTTCAGGCAT
TTCTGCTTTATGACTAGATACCAAGTACATTTTCAAAATTAGGCCATAATGTATGTTTAG
ACACAATGGCTATCAACAGCTGCTAATAACAAAAGAAAAGCAGAATTTGGGATATAACCG
AAATGGCTGCTTATTTCAAGAAACCTTTGCCAGCCCGTTTCTCCTAAGTCATTTCATCAA
TGTGATTTGAATGTCAATCTGTGTGCTTCTGGTGACTTAGCGCTGTGGCAAGCAGTTTCG
CACATTGTTTTCATGTTGTCCTTTACGCTGCAAATGTTTTCCAATTAGAATATGGCCAGA
TAATGTTATTGAGGGCCAGTGGGGGAGGAGACCTCCCCTTCCTATGGCATCTTCCACTTC
ATGACAACATAGTCTCTAATGGAGGAGTCAACCCTGAAAATGGTCAACCTCTCTACAAGC
ATATGAAGTACTGGTGGATTTAACAGCCTGTGCAACGGGGCTGGTCTCTCTGTGAGGATA
CAACCACAGGTTTGCCCATCCTGTCCCCTCAAATGGCCAGGGTGACTAGCAATTTCCATT
TAGTGGACATAGAGCTATAGGGCCTGGGGAAGGGGTTTCCTACTTGAGGTTGGGGGAAAA
CAACTTGGAAAGACTCCACAGTTACCACAGGTAGGTGACA..........

Sequence Detail Report

Gene Symbol (Gene ID) Kcnq5 (ENSMUSG00000028033)
Transcript ID ENSMUST00000173058
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 824 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information