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Target CDS Information

Gene Symbol (Gene ID) Jarid2 (ENSMUSG00000038518)
Cross Reference
CCDS CCDS36646.1
EMBL AK045214, AK147226, AK164134, ...show all
Fantom B130048B16, C530046H17, M421020G19
GO GO:0000122, GO:0000977, GO:0001227, ...show all
goslim_goa GO:0001071, GO:0002376, GO:0003674, ...show all
MGI_trans_name Jarid2-003
OTTP OTTMUSP00000054202
OTTT OTTMUST00000096890
PDB 2RQ5
protein_id AAH03374.1, AAH52444.1, AAH60695.1, ...show all
Reactome R-MMU-212165, R-MMU-212300, R-MMU-74160
RefSeq_mRNA NM_001205044.1
RefSeq_peptide NP_001191973
RefSeq_peptide_predicted XP_006516921.1
UCSC uc007qgr.2
UniParc UPI000000406B
Uniprot/SWISSPROT Q62315
Vega_transcript Jarid2-003, OTTMUST00000096890
Vega_translation 214398, OTTMUSP00000054202
Definition protein_id:ENSMUSP00000134675
translation:
MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNAQKRQHGEGLAGSLKAVN
GLLGNAQAKALGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQS
QPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQ
DEEDVEEEDDETEDVKATTNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSAREKEPAHK
HRSKEATPGKEKHSEPRADSRREQASGAQPTAASAAASSAKGLAANHQPPPSHRSAQDLR
KQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKYTATVTKGTVTYTKAKRELVKET
KPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPAASGLKASSRLNPKSCTK
EVGGRQLREGLRNSKRRLEEAQQVDKPQSPPKKMKGVAGNAEAPGKKASAASGEKSLLNG
HVKKEVPERSLERNRPKRAAAGKNMLGKQAHGKTEGTPCENRSTSQPESSHKPHDPQGKP
EKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKYGMCRVIPPPDWRPECKLN
DEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLI
NEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKE
VLMEKEILEKRKGPLEGHTESDHHKFHSLPRFEPKNGLVHGVTPRNGFRSKLKEVGRAPL
KTGRRRLFAQEKEVVKEEEEDKGVLNDFHKCIYKGRSVSLTTFYRTARNIMNMCFSKEPA
PAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSI
LRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLED
VVHTLLQGNGTPGLQMLESNVMISPEVLCKKGIKVHRTVQQSGQFVVCFPGSFVSKVCCG
YNVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTIS
ALLDELRDTELRQRRLLFEAGLHSSARYGSHDGNSTVADGKKKPRKWLQLETSERRCQIC
QHLCYLSMVVQENENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKVSG
KHGGIENCLNKPTPKRGPRKRATVDVPPSRLPSS

Chromosome 13
Length
Position(start - end)
188,079
44,731,872 - 44,919,952
Orient to Chromosome plus
Link Location : (13:44731872-44919952)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Jarid2 (ENSMUSG00000038518)
Transcript ID ENSMUST00000173704
Reports
substitution
cSNPs7
Insertion145
Deletion164
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num5
non-synonymous num2
synonymous substitutions 44848309 (p.Leu71Leu), 44906567 (p.Leu758Leu), 44907583 (p.Ile844Ile), 44913722 (p.Val1006Val), 44914368 (p.Asp1084Asp),
non-synonymous substitutions 44914790 (p.Leu1096Gln), 44919929 (p.Pro1228Thr),
B6 transcript
(ENSMUST00000173704)
MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNAQKRQHGEGLAGSLKAVN
GLLGNAQAKALGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQS
QPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQ
DEEDVEEEDDETEDVKATTNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSAREKEPAHK
HRSKEATPGKEKHSEPRADSRREQASGAQPTAASAAASSAKGLAANHQPPPSHRSAQDLR
KQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKYTATVTKGTVTYTKAKRELVKET
KPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPAASGLKASSRLNPKSCTK
EVGGRQLREGLRNSKRRLEEAQQVDKPQSPPKKMKGVAGNAEAPGKKASAASGEKSLLNG
HVKKEVPERSLERNRPKRAAAGKNMLGKQAHGKTEGTPCENRSTSQPESSHKPHDPQGKP
EKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKYGMCRVIPPPDWRPECKLN
DEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLI
NEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKE
VLMEKEILEKRKGPLEGHTESDHHKFHSLPRFEPKNGLVHGVTPRNGFRSKLKEVGRAPL
KTGRRRLFAQEKEVVKEEEEDKGVLNDFHKCIYKGRSVSLTTFYRTARNIMNMCFSKEPA
PAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSI
LRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLED
VVHTLLQGNGTPGLQMLESNVMISPEVLCKKGIKVHRTVQQSGQFVVCFPGSFVSKVCCG
YNVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTIS
ALLDELRDTELRQRRLLFEAGLHSSARYGSHDGNSTVADGKKKPRKWLQLETSERRCQIC
QHLCYLSMVVQENENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKVSG
KHGGIENCLNKPTPKRGPRKRATVDVPPSRLPSS*
MSMv4 transcript
MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNAQKRQHGEGLAGSLKAVN
GLLGNAQAKALGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQS
QPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQ
DEEDVEEEDDETEDVKATTNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSAREKEPAHK
HRSKEATPGKEKHSEPRADSRREQASGAQPTAASAAASSAKGLAANHQPPPSHRSAQDLR
KQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKYTATVTKGTVTYTKAKRELVKET
KPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPAASGLKASSRLNPKSCTK
EVGGRQLREGLRNSKRRLEEAQQVDKPQSPPKKMKGVAGNAEAPGKKASAASGEKSLLNG
HVKKEVPERSLERNRPKRAAAGKNMLGKQAHGKTEGTPCENRSTSQPESSHKPHDPQGKP
EKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKYGMCRVIPPPDWRPECKLN
DEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLI
NEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKE
VLMEKEILEKRKGPLEGHTESDHHKFHSLPRFEPKNGLVHGVTPRNGFRSKLKEVGRAPL
KTGRRRLFAQEKEVVKEEEEDKGVLNDFHKCIYKGRSVSLTTFYRTARNIMNMCFSKEPA
PAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSI
LRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLED
VVHTLLQGNGTPGLQMLESNVMISPEVLCKKGIKVHRTVQQSGQFVVCFPGSFVSKVCCG
YNVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTIS
ALLDELRDTELRQRRQLFEAGLHSSARYGSHDGNSTVADGKKKPRKWLQLETSERRCQIC
QHLCYLSMVVQENENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKVSG
KHGGIENCLNKPTPKRGPRKRATVDVPTSRLPSS*
homology99.84 (1235 / 1235)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Jarid2 (ENSMUSG00000038518)
Transcript ID ENSMUST00000173704
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCAGGTAAGGCTGCGGGGCACAGACCATTGGGCTCTCGGGCACTCAGTGT
TCGAGACGCTTCCTTACGGGCTGCCTGTGTTGGGGGGTCGGTCTCCATTTTTCCGTTCAC
GGTTTCACCTCGGCGTTGGGAGTCTCGGTCGCGGACAGCCCTAGTCCTGAGGGTAAAGAC
CCCCTTCACCGTCTCCAGGGACGGCGGGGCTTCACCTCGGAGCCACCGGCGACGGCCTAG
GGTCGCGTCGGCCCCGGGGACAGGGGCGGGCACGCGGGCCGGCGACCACGAGGCCGCGAG
CTTTCGCCGGGAGGCTGCCCCAGCCGCGTCTGCCTCGCGCGTGGGGTCGCGTGCGGCCGC
GGGCCGGCTTGGAGCCGTGACCTCGGACCACCCCGGCGGCCGGGCGGCCGCCCGCTTGCT
CGGCACACGGGCGCTTGTCCTGAGGTGACACCGCCGGCAACGGCTGAAGCAAGCGGGCGC
TGCCGATCAGCGAGTTCGCACCGAGCGAGGATCCCTCTTGGTGCGTGGCCCAGTTTGGCT
GAGGACCCGCTCCAACCCCTCGCTGACACCGCCCCCCGCCGCCGCCGCCGCCACGCTCCG
AGGCCTTTCCCCCGGGAAGCCTGGCGGCTTGCCCTCGCGGGCCCGCGGGCGCGCTCTCGC
GCGCCGATTCCTCGATTCCACAGGCGGTTCGCGCCCGGGGTGGGGGCGGGGCGGGGCGCG
CGGGGCCGGGCCGAGCCGGGCCGGGCCGGGAGGGCGGCCCCCGCGGGGAGGGGACTGGGG
GGCGGGGCCGGCGTGGGGAGTTCCTCGCTCCCGGACCACACGCTCCGCGGGCCAATCCCG
AGCCAGCCTCTAGCAGTGTCGCACGCGGGACACGTCCAAGCGTTTGTTGGCAGGGCCCGG
GGAAGGGGGAGGGGGAAGCGATCGGGGAAAAGGGAGTTGAGTGACAGGAGGCGTGGGGCA
CGCTGGGAATTGTAGTTCTTCGCTTCCGTGGCCATAGCCATTTTGTAGTC
1 EXON 1 44,730,774 44,730,888 - - 115
AAGGGACTACAACTTCCAGAAGATCAAGGGGACTATTCTAAGGTGCCCCGGGAATAGGCG
GCTCTCCCCCGGGCCGGGCGTCCTGGGGCACTGGTACCCAGCTGCCCGGCTGCAG
INTRON 1 - 2 44,730,889 44,731,712 824
GTAGACGTGAGGGCAGTGGCGAAGG..........TTCTCAATTTCGGATTTATTTCAAG
2 EXON 2 44,731,713 44,731,916 - 0 204
GCGAATCTGGTTTTGGGGGAAGAGGAAGAAAAGTCGGATTACAAGATCAACCACCACCAC
CAACAATAAAAACCACCAGGATATTTTTTTGCAAATTTCTGACGGCTTTAAATTCATGAA
GCAATTGTCCCCTTTTGCAATCAGCATTTGGATCTCAGAATGAGCAAGGAAAGACCCAAG
AGGAATATCATTCAGAAGAAATAC
INTRON 2 - 3 44,731,917 44,823,379 91,463
GTAAGTGCTCTTAACAACACATCCT..........ATTTTCAGTAATTCTCCTTCCACAG
3 EXON 3 44,823,380 44,823,515 0 1 136
GATGACAGCGATGGGATCCCGTGGTCAGAAGAGAGAGTTGTACGAAAAGTCCTGTATTTG
TCCCTAAAGGAATTCAAGAATGCACAGAAAAGGCAGCATGGGGAAGGCCTTGCCGGGAGC
CTGAAGGCGGTAAATG
INTRON 3 - 4 44,823,516 44,848,279 24,764
GTGAGTTGAAAGTGGAACTGGATGG..........TGTTTGTCCCTTTTCTCACCTGTAG
4 EXON 4 44,848,280 44,848,421 1 2 142
GGCTTCTTGGTAATGCCCAGGCTAAGGCATTAGGACCAGCCTCAGAGCAGTCAGAGAACG
AGAAGGATGATGCCTCCCAAGTGTCCTCTACTAGCAACGATGTTAGTTCTTCAGATTTTG
AAGAAGGGCCGTCGAGGAAAAG
INTRON 4 - 5 44,848,422 44,874,282 25,861
GTTAGTACCCAAGCATTAGTGAATA..........TTTTACATTTCTTTTGTTGTTGCAG
5 EXON 5 44,874,283 44,874,452 2 1 170
GCCCAGGCTGCAAGCACAAAGGAAGTTTGCTCAATCTCAGCCGAATAGTCCCAGCACAAC
TCCAGTGAAGATAGTGGAGCCTTTGCTACCCCCGCCAGCTACTCAAATTTCTGACCTCTC
TAAAAGGAAGCCTAAGACAGAAGACTTTCTTACCTTTCTCTGCCTTCGAG
INTRON 5 - 6 44,874,453 44,884,703 10,251
GTAAGCTTGGAGGACACATGGCACC..........GAACTACATATGTTAAACCCATCAG
6 EXON 6 44,884,704 44,884,880 1 1 177
GTTCTCCTGCGCTGCCCAACAGTATGGTATATTTTGGAAGCTCTCAGGATGAGGAGGATG
TCGAAGAGGAAGATGATGAGACGGAAGATGTCAAAGCAACCACCAACAATGCTTCATCTT
CGTGCCAGTCAACCCCCAGGAAAGGAAAAACCCATAAGCATGTACACAACGGGCACG
INTRON 6 - 7 44,884,881 44,896,253 11,373
GTAGGTTCACCGTGGAGGCTGTGTG..........TTCTTCCCTTCTCTTCCTTTTCTAG
7 EXON 7 44,896,254 44,896,489 1 0 236
TTTTCAATGGCTCCAGTAGGTCAGCACGGGAGAAAGAGCCTGCTCACAAACACAGAAGCA
AAGAGGCCACTCCGGGGAAGGAGAAGCACAGCGAGCCCAGGGCAGACAGCCGGAGAGAAC
AGGCTTCAGGGGCTCAGCCCACGGCCGCCTCGGCTGCGGCTTCCTCTGCCAAGGGACTTG
CTGCCAACCACCAACCTCCCCCTTCGCATCGGTCTGCTCAGGACTTACGGAAACAG
INTRON 7 - 8 44,896,490 44,902,225 5,736
GTAACCCTCAGTGAGGGCCTTTCTA..........TCCCCTGCTTCTGCTGCCTCCATAG
8 EXON 8 44,902,226 44,903,258 0 1 1,033
GTGTCTAAGGTAAATGGAGTCACTCGAATGTCATCTCTGGGTGCAGGTACAAACAGTGCC
AAAAAGATCCGAGAAGTCAGACCTTCACCATCCAAAACTGTGAAGTACACTGCCACAGTG
ACCAAGGGGACTGTCACATACACCAAAGCCAAGAGAGAACTGGTCAAGGAAACCAAACCC
AACCACCACAAACCCAGTTCAGCTGTCAACCACACAATCTCAGGGAAAACTGAAAGTAGC
AATGCAAAAACCCGCAAACAGGTGCTATCCCTTGGGGGGGCGTCCAAGTCCACCGGGCCT
GCTGCCAGTGGCCTCAAGGCCAGCAGCAGGTTGAACCCAAAGTCATGCACTAAGGAGGTG
GGGGGGCGGCAGCTGAGGGAGGGGCTGCGGAATTCCAAAAGGAGACTGGAAGAGGCACAG
CAAGTGGACAAGCCGCAGTCACCCCCCAAGAAGATGAAGGGGGTGGCAGGCAATGCTGAA
GCCCCTGGCAAAAAGGCCTCAGCGGCTTCAGGAGAAAAGTCTCTGCTGAATGGACACGTG
AAGAAGGAAGTGCCCGAGCGAAGTTTGGAAAGGAATCGGCCAAAGCGGGCCGCGGCTGGC
AAGAATATGCTGGGCAAACAAGCACATGGCAAGACAGAGGGCACCCCCTGTGAAAATCGT
TCTACCTCGCAACCCGAGTCCTCGCACAAGCCGCATGACCCACAGGGCAAGCCAGAGAAG
GGGAGCGGCAAGTCTGGGTGGGCAGCGATGGACGAGATCCCTGTCCTCAGGCCCTCCGCC
AAGGAGTTCCACGACCCGCTCATCTACATCGAGTCAGTACGTGCTCAGGTGGAGAAGTAC
GGGATGTGTCGCGTGATTCCCCCTCCAGACTGGCGGCCAGAGTGCAAGCTCAACGATGAG
ATGCGCTTTGTCACGCAGATCCAGCACATCCATAAGCTGGGCCGGCGCTGGGGCCCCAAC
GTGCAGCGGCTAGCCTGCATAAAGAAGCACCTCAGATCTCAGGGCATCACCATGGATGAG
CTCCCCCTCATAG
INTRON 8 - 9 44,903,259 44,906,232 2,974
GTGAGTTAATTCGGGGATTGCCGGG..........ACCATTTCACCCCATTGCTGCCCAG
9 EXON 9 44,906,233 44,906,735 1 0 503
GAGGCTGTGAGCTCGACCTGGCCTGCTTTTTCCGGCTGATTAATGAGATGGGCGGCATGC
AGCAAGTGACTGACCTCAAAAAATGGAACAAACTAGCAGACATGCTGCGCATTCCCAAAA
CTGCCCAGGACCGGCTGGCCAAGCTGCAGGAGGCCTACTGCCAGTACCTGCTTTCCTATG
ACTCCCTGTCCCCCGAGGAGCACCGACGGCTGGAGAAGGAGGTGCTGATGGAGAAGGAGA
TCCTGGAAAAGCGCAAAGGGCCATTAGAGGGGCACACGGAGAGCGACCACCACAAGTTCC
ACTCCCTGCCCCGCTTTGAGCCCAAGAATGGGCTTGTCCACGGTGTCACACCTAGGAATG
GATTCCGTAGCAAGCTCAAGGAGGTGGGCCGGGCCCCACTGAAGACGGGCCGGCGGCGGC
TGTTCGCTCAGGAAAAAGAAGTGGTCAAAGAGGAGGAAGAAGACAAAGGTGTCCTCAATG
ACTTCCACAAGTGCATCTATAAG
INTRON 9 - 10 44,906,736 44,907,493 758
GTGAGTGGGCTGTGCAGTAGGGTGT..........TCTTCTTCTGTTTTCTTTGTTTCAG
10 EXON 10 44,907,494 44,907,586 0 0 93
GGAAGATCTGTTTCTCTAACAACTTTTTATCGAACAGCAAGAAACATCATGAACATGTGT
TTCAGCAAGGAGCCCGCACCAGCAGAGATCGAG
INTRON 10 - 11 44,907,587 44,910,342 2,756
GTAAGTAAGTTAGCCATCTCCATAC..........GACTGGTTTTTCCTCTTGTCAACAG
11 EXON 11 44,910,343 44,910,461 0 2 119
CAAGAGTACTGGAGGTTAGTGGAAGAGAAGGACTGTCATGTGGCAGTTCACTGCGGAAAG
GTGGACACTAATACCCATGGCAGCGGGTTCCCGGTGGGAAAATCAGAACCCTTTTCAAG
INTRON 11 - 12 44,910,462 44,910,536 75
GTAATTGTACATTATCTTGTCCGTG..........GACAGCCCCTTCTTTCCCTCTGCAG
12 EXON 12 44,910,537 44,910,607 2 1 71
GCATGGATGGAACCTCACTGTCCTCCCAAATAACACAGGGTCCATCCTGCGTCACCTTGG
TGCTGTGCCTG
INTRON 12 - 13 44,910,608 44,911,165 558
GTAAGTATGACCTGATCTCTTCTGG..........TTAATGACATCTCTTTATGTTGTAG
13 EXON 13 44,911,166 44,911,280 1 2 115
GAGTGACTATTCCCTGGCTAAATATTGGCATGGTCTTTTCTACCTCATGCTGGTCTCGAG
ACCAAAATCACCTTCCATATATTGACTACTTACACACTGGTGCTGACTGCATTTG
INTRON 13 - 14 44,911,281 44,913,180 1,900
GTGAGTACTCACCCCCAGCAGCAGG..........GTCTCTTGTCTTTCCACCACCCCAG
14 EXON 14 44,913,181 44,913,286 2 0 106
GTATTGCATTCCTGCTGAGGAGGAGAACAAGCTGGAGGACGTAGTCCACACTCTGCTGCA
GGGCAATGGTACCCCAGGGCTGCAGATGCTGGAGAGCAATGTAATG
INTRON 14 - 15 44,913,287 44,913,650 364
GTAGGTCTATTATTGTTAGAAAGTG..........CTCTCAGTTGGCACTCTCTCCCCAG
15 EXON 15 44,913,651 44,913,833 0 0 183
ATCTCCCCAGAGGTGCTGTGCAAGAAGGGGATCAAGGTCCACAGGACTGTACAGCAGAGT
GGGCAGTTTGTTGTCTGCTTCCCGGGATCCTTTGTGTCCAAAGTATGTTGTGGCTACAAC
GTCTCAGAGACAGTGCACTTTGCTACCACCCAGTGGACAAGCATGGGCTTCGAGACTGCC
AAG
INTRON 15 - 16 44,913,834 44,914,245 412
GTAAGCAGAGCAGGCGTCCTTAGGT..........TTTGTAAAGGTGGTTCTTCTTTCAG
16 EXON 16 44,914,246 44,914,376 0 2 131
GAGATGAAGCGCCGCCATATAGCTAAGCCATTCTCCATGGAGAAGTTGCTCTACCAGATT
GCACAAGCAGAAGCAAAAAAGGAAAATGGTCCCACCCTCAGTACCATCTCAGCCCTTCTG
GACGAGCTCAG
INTRON 16 - 17 44,914,377 44,914,763 387
GTAGTGTAGACCCAGGTCTCAGGAC..........TGACACCCGCCACTTCCCTGCACAG
17 EXON 17 44,914,764 44,914,947 2 0 184
GGATACAGAGCTGCGGCAGCGCAGGCAGTTGTTCGAGGCTGGCCTTCACTCTTCTGCACG
CTATGGCAGCCACGACGGCAACAGCACAGTGGCGGATGGGAAGAAAAAGCCTCGAAAGTG
GCTACAGCTGGAAACTTCAGAAAGGAGGTGCCAGATCTGCCAGCACTTGTGCTACCTGTC
CATG
INTRON 17 - 18 44,914,948 44,916,416 1,469
GTGAGTGTATGTGTGAGAGCCCAGT..........CTCAGCATGAACCCTGTCTCTACAG
18 EXON 18 44,916,417 44,916,524 0 0 108
GTGGTACAGGAGAATGAGAATGTCGTGTTCTGCCTGGAGTGTGCACTGCGCCATGTGGAG
AAGCAGAAGTCTTGCCGTGGGCTGAAGCTGATGTACCGCTACGATGAG
INTRON 18 - 19 44,916,525 44,919,799 3,275
GTGAGTTCTGACTTAGAACAGAGTT..........TAATGTTGTCTGTCTGTCCTGGCAG
19 EXON 19 44,919,800 44,920,108 0 - 309
GAGCAGATCATCAGTTTGGTCAACCAGATATGTGGCAAAGTGTCTGGCAAACACGGTGGC
ATCGAGAACTGTCTCAACAAACCCACACCAAAAAGAGGTCCCCGCAAGAGAGCGACCGTG
GATGTGCCGACATCTCGGCTCCCATCCTCATGAAGATGCCGAACCCATGGTCACTTATAT
ATTTTTTGTAATTACTATATTCTAGTTTGGAGTACTTGCTGTAGGATACAAGCTGTCTTT
GCACTAGCTCTAAAGAAGAATTTCTTCTGGTTTTAGAGAACTGATTTTGTTTTAGCATTA
AACTGTTCA
3' upstream sequence
AGTTTTTGTACGTAGATATCTAGATACTGCAGTCAGGTTTGGAAGCTGCCGTACACTCAC
TGTCTAAAACCCTTGAGGGGCTGTATTAATTTGTATCGCCCCATGGCTGTGAAATGCCTT
TTTTTTTGTTTGTTTGTTTTTGTTCTGTTTTGTTTGGTAACTGTTGAGGAATAAAGGCTT
TTTAACCCATTTTTGAAGATGGTGAAGTTTGGAGAACAAATTTTAAAACCATCAGTCAGA
TGAGATTTTTCTAGATTGGAAAAGGGATAGAAGATACACACACACACACACACACACACA
CACACAGAAAAAAGAAAACTTGAAATGGCTTTACTTTGGCTGTCTTTTCTTCTGTCATGT
GCGAAGGGAGTTTGTAACTTTTGGAACCGGAGAGCCCTGTTTCTTTGGCTGGGCGGTTAT
GGCAGCTGAAGGCAAACTGTGAGGTTTGAGTGACGAGGTTCTCATACCAGCACATCACTA
TGCATCCGTTCGAGGGAGAGAGAGACAAAGACAAAGACTGCCTGCCTTGGAGGGTCACTG
AGGGAGACCTGTGCCTGATTTCATTAGGAAATCCATTCTGTTATTTTTTTTTGGTGCTGT
TGGCTACTTTATCAAAAAAACAAAAAACAAAAAAACAAAAAACCCTTCAATAGCATCCTT
GAGGAAAAGGAACAGCAGTTGACTGTAAGTGCTTCCCTGTCATCCATGTGCAATTTCCCG
ACATTCCACCTCCATCTCTGCTTGTGTCCCTCACATCAGCATTAATCTTTGTTTCCCTCA
CACTTAGAGCCACTAAGTCTGCAGTTCTTTTTGAATGTGAAACACATCTGTGCTCCTCTT
GTCTATTTTTTCTCTTCATGTTTTAACAAAAAAGAAAAAAAGAAAAAAAATCCCATCCCT
TTTGTACATACTCCTGTAAATTGTTTTAAATACTTGAGCCTTTTCTTGGAGGGGGAGGGA
AGGGGTGAGAAGATGGAGAAAAGCCTTACGTTTCCGTTTC..........

Sequence Detail Report

Gene Symbol (Gene ID) Jarid2 (ENSMUSG00000038518)
Transcript ID ENSMUST00000173704
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 1235 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
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