MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Jarid2 (ENSMUSG00000038518)

Cross Reference

EMBL	AC166074, AC170597
GO	GO:0000122, GO:0001889, GO:0003677, ...show all
goslim_goa	GO:0002376, GO:0003674, GO:0003677, ...show all
MGI_trans_name	Jarid2-006
OTTP	OTTMUSP00000054208
OTTT	OTTMUST00000096901
UCSC	uc007qgv.1
UniParc	UPI00021CF76B
Uniprot/SPTREMBL	G3UZT8
Vega_transcript	Jarid2-006, OTTMUST00000096901

Vega_translation

214404, OTTMUSP00000054208

Definition

protein_id:ENSMUSP00000134630
translation:

MAAPRVCQVQFLVAYLEEPGIEGLLGNAQAKALGPASEQSENEKDDASQVSSTSNDVSSS
DFEEGPSRKRPRLQAQRKFAQSQPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTEDFL
TFLCLRGSPALPNSMVYFGSSQDEEDVEEEDDETEDVKATTNNASSSCQSTPRKGKTHKH
VHNGHVFNGSSRSAREKEPAHKHRSKEATPGKEKHSEPRADSRREQASGAQPTAASAAAS
SAKGLAANHQPPPSHRSAQDLRKQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKY
TATVTKGTVTYTKAKRELVKETKPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASK
STGPAASGLKASSRLNPKSCTKEVGGRQLREGLRNSKRRLEEAQQVDKPQSPPKKMKGVA
GNAEAPGKKASAASGEKSLLNGHVKKEVPERSLERNRPKRAAAGKNMLGKQAHGKTEGTP
CENRSTSQPESSHKPHDPQGKPEKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQ
VEKYGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGI
TMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEA
YCQYLLSYDSLSPEEHRRLEKEVLMEKEILEKRKGPLEGHTESDHHKFHSLPRFEPKNGL
VHGVTPRNGFRSKLKEVGRAPLKTGRRRLFAQEKEVVKEEEEDKGVLNDFHKCIYKGRSV
SLTTFYRTARNIMNMCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVG
KSEPFSRHGWNLTVLPNNTGSILRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDY
LHTGADCIWYCIPAEEENKLEDVVHTLLQGNGTPGLQMLESNVMISPEVLCKKGIKVHRT
VQQSGQFVVCFPGSFVSKVCCGYNVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEK
LLYQIAQAE

Chromosome

Length
Position(start - end)

73,504
44,840,814 - 44,914,319

Orient to Chromosome

plus

Link

Location : (13:44840814-44914319)
/

Detail Map

name	Jarid2 (ENSMUSG00000038518)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Jarid2 note : jumonji, AT rich interactive domain 2 [Source:MGI Symbol;Acc:MGI:104813]

name	Jarid2 (ENSMUSG00000038518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000174068

name	Jarid2 (ENSMUSG00000038518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000173704

name	Jarid2 (ENSMUSG00000038518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000044608

name	Jarid2 (ENSMUSG00000038518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000173367

name	Jarid2 (ENSMUSG00000038518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000173246

name	Jarid2 (ENSMUSG00000038518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000172977

name	Jarid2 (ENSMUSG00000038518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000173906

name	Jarid2 (ENSMUSG00000038518)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000173003

name	Jarid2 (ENSMUSG00000038518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Jarid2-011 Vega_transcript:OTTMUST00000096888 Uniprot/SPTREMBL:G3UZQ8 EMBL:AC166074 EMBL:AC170597 GO:GO:0000122 GO:GO:0001889 GO:GO:0003677 GO:GO:0005515 GO:GO:0005634 GO:GO:0008285 GO:GO:0035098 GO:GO:0042127 GO:GO:0045892 GO:GO:0048536 GO:GO:0048538 MGI_trans_name:Jarid2-011 Vega_translation:214396 Vega_translation:OTTMUSP00000054200 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 OTTP:OTTMUSP00000054200 OTTT:OTTMUST00000096888 UniParc:UPI00021CF766
definition	note : transcript_id=ENSMUST00000174068 protein_id : ENSMUSP00000134593 translation : MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNAQKRQHGEGLAGSLKAVNGLLGNAQAKALGPASEQSEN

name	Jarid2 (ENSMUSG00000038518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS36646.1 Uniprot/SWISSPROT:Q62315 RefSeq_peptide:NP_001191973 RefSeq_mRNA:NM_001205044.1 RefSeq_peptide_predicted:XP_006516921.1 Vega_transcript:Jarid2-003 Vega_transcript:OTTMUST00000096890 UCSC:uc007qgr.2 Fantom:B130048B16 Fantom:C530046H17 Fantom:M421020G19 EMBL:AK045214 EMBL:AK147226 EMBL:AK164134 EMBL:BC003374 EMBL:BC052444 EMBL:BC060695 EMBL:CH466546 EMBL:D31967 GO:GO:0000122 GO:GO:0000977 GO:GO:0001227 GO:GO:0001889 GO:GO:0003677 GO:GO:0003682 GO:GO:0005515 GO:GO:0005634 GO:GO:0006351 GO:GO:0008285 GO:GO:0016568 GO:GO:0031061 GO:GO:0035097 GO:GO:0035098 GO:GO:0042127 GO:GO:0045892 GO:GO:0048536 GO:GO:0048538 GO:GO:0048863 GO:GO:0051574 MGI_trans_name:Jarid2-003 PDB:2RQ5 Vega_translation:214398 Vega_translation:OTTMUSP00000054202 goslim_goa:GO:0001071 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0030154 goslim_goa:GO:0034641 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 goslim_goa:GO:0051276 protein_id:AAH03374.1 protein_id:AAH52444.1 protein_id:AAH60695.1 protein_id:BAA06736.1 protein_id:BAC32264.1 protein_id:BAE27780.1 protein_id:BAE37641.1 protein_id:EDL41007.1 OTTP:OTTMUSP00000054202 OTTT:OTTMUST00000096890 Reactome:R-MMU-212165 Reactome:R-MMU-212300 Reactome:R-MMU-74160 UniParc:UPI000000406B
definition	note : transcript_id=ENSMUST00000173704 protein_id : ENSMUSP00000134675 translation : MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNAQKRQHGEGLAGSLKAVNGLLGNAQAKALGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQSQPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQDEEDVEEEDDETEDVKATTNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSAREKEPAHKHRSKEATPGKEKHSEPRADSRREQASGAQPTAASAAASSAKGLAANHQPPPSHRSAQDLRKQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKYTATVTKGTVTYTKAKRELVKETKPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPAASGLKASSRLNPKSCTKEVGGRQLREGLRNSKRRLEEAQQVDKPQSPPKKMKGVAGNAEAPGKKASAASGEKSLLNGHVKKEVPERSLERNRPKRAAAGKNMLGKQAHGKTEGTPCENRSTSQPESSHKPHDPQGKPEKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKYGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKEVLMEKEILEKRKGPLEGHTESDHHKFHSLPRFEPKNGLVHGVTPRNGFRSKLKEVGRAPLKTGRRRLFAQEKEVVKEEEEDKGVLNDFHKCIYKGRSVSLTTFYRTARNIMNMCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSILRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQGNGTPGLQMLESNVMISPEVLCKKGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYNVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDELRDTELRQRRLLFEAGLHSSARYGSHDGNSTVADGKKKPRKWLQLETSERRCQICQHLCYLSMVVQENENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKVSGKHGGIENCLNKPTPKRGPRKRATVDVPPSRLPSS

name	Jarid2 (ENSMUSG00000038518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS36646.1 Uniprot/SWISSPROT:Q62315 RefSeq_peptide:NP_068678 RefSeq_mRNA:NM_021878.3 RefSeq_peptide_predicted:XP_006516921.1 Vega_transcript:Jarid2-002 Vega_transcript:OTTMUST00000096891 UCSC:uc007qgs.2 Fantom:B130048B16 Fantom:C530046H17 Fantom:M421020G19 EMBL:AK045214 EMBL:AK147226 EMBL:AK164134 EMBL:BC003374 EMBL:BC052444 EMBL:BC060695 EMBL:CH466546 EMBL:D31967 GO:GO:0000122 GO:GO:0000977 GO:GO:0001227 GO:GO:0001889 GO:GO:0003677 GO:GO:0003682 GO:GO:0005515 GO:GO:0005634 GO:GO:0006351 GO:GO:0008285 GO:GO:0016568 GO:GO:0031061 GO:GO:0035097 GO:GO:0035098 GO:GO:0042127 GO:GO:0045892 GO:GO:0048536 GO:GO:0048538 GO:GO:0048863 GO:GO:0051574 MGI_trans_name:Jarid2-002 PDB:2RQ5 Vega_translation:214399 Vega_translation:OTTMUSP00000054203 goslim_goa:GO:0001071 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0030154 goslim_goa:GO:0034641 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 goslim_goa:GO:0051276 protein_id:AAH03374.1 protein_id:AAH52444.1 protein_id:AAH60695.1 protein_id:BAA06736.1 protein_id:BAC32264.1 protein_id:BAE27780.1 protein_id:BAE37641.1 protein_id:EDL41007.1 OTTP:OTTMUSP00000054203 OTTT:OTTMUST00000096891 Reactome:R-MMU-212165 Reactome:R-MMU-212300 Reactome:R-MMU-74160 UniParc:UPI000000406B
definition	note : transcript_id=ENSMUST00000044608 protein_id : ENSMUSP00000037774 translation : MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNAQKRQHGEGLAGSLKAVNGLLGNAQAKALGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQSQPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQDEEDVEEEDDETEDVKATTNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSAREKEPAHKHRSKEATPGKEKHSEPRADSRREQASGAQPTAASAAASSAKGLAANHQPPPSHRSAQDLRKQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKYTATVTKGTVTYTKAKRELVKETKPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPAASGLKASSRLNPKSCTKEVGGRQLREGLRNSKRRLEEAQQVDKPQSPPKKMKGVAGNAEAPGKKASAASGEKSLLNGHVKKEVPERSLERNRPKRAAAGKNMLGKQAHGKTEGTPCENRSTSQPESSHKPHDPQGKPEKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKYGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKEVLMEKEILEKRKGPLEGHTESDHHKFHSLPRFEPKNGLVHGVTPRNGFRSKLKEVGRAPLKTGRRRLFAQEKEVVKEEEEDKGVLNDFHKCIYKGRSVSLTTFYRTARNIMNMCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSILRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQGNGTPGLQMLESNVMISPEVLCKKGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYNVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDELRDTELRQRRLLFEAGLHSSARYGSHDGNSTVADGKKKPRKWLQLETSERRCQICQHLCYLSMVVQENENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKVSGKHGGIENCLNKPTPKRGPRKRATVDVPPSRLPSS

name	Jarid2 (ENSMUSG00000038518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Jarid2-007 Vega_transcript:OTTMUST00000096892 Uniprot/SPTREMBL:G3UZW3 EMBL:AC166074 EMBL:AC170597 GO:GO:0000122 GO:GO:0001889 GO:GO:0003677 GO:GO:0005515 GO:GO:0005634 GO:GO:0008285 GO:GO:0035098 GO:GO:0042127 GO:GO:0045892 GO:GO:0048536 GO:GO:0048538 MGI_trans_name:Jarid2-007 Vega_translation:214400 Vega_translation:OTTMUSP00000054204 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 OTTP:OTTMUSP00000054204 OTTT:OTTMUST00000096892 UniParc:UPI00021CF768
definition	note : transcript_id=ENSMUST00000173367 protein_id : ENSMUSP00000134658 translation : MMPPKCPLLATMLVLQILKKGRRGKGSPALPNSMVYFGSSQDEEDVEEEDDETEDVKATTNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSAREKEPAHKHRSKEATPGKEKHSEPRADSRREQASGAQPTAASAAASSAKGLAANHQPPPSHRSAQDLRKQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKYTATVTKGTVTYTKAKRELVKETKPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPAASGLKASSRLNPKSCTKEVGGRQLREGLRNSKRRLEEAQQVDKPQSPPKKMKGVAGNAEAPGKKASAASGEKSLLNGHVKKEVPERSLERNRPKRAAAGKNMLGKQAHGKTEGTPCENRSTSQPESSHKPHDPQGKPEKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKYGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGITMDELPLI

name	Jarid2 (ENSMUSG00000038518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS36646.1 Uniprot/SWISSPROT:Q62315 RefSeq_peptide:NP_001191972 RefSeq_mRNA:NM_001205043.1 RefSeq_mRNA_predicted:XM_006516855.2 RefSeq_mRNA_predicted:XM_006516856.2 RefSeq_peptide_predicted:XP_006516918.1 RefSeq_peptide_predicted:XP_006516919.1 RefSeq_peptide_predicted:XP_006516921.1 Vega_transcript:Jarid2-001 Vega_transcript:OTTMUST00000096894 UCSC:uc007qgu.2 Fantom:B130048B16 Fantom:C530046H17 Fantom:M421020G19 EMBL:AK045214 EMBL:AK147226 EMBL:AK164134 EMBL:BC003374 EMBL:BC052444 EMBL:BC060695 EMBL:CH466546 EMBL:D31967 GO:GO:0000122 GO:GO:0000977 GO:GO:0001227 GO:GO:0001889 GO:GO:0003677 GO:GO:0003682 GO:GO:0005515 GO:GO:0005634 GO:GO:0005634 GO:GO:0006351 GO:GO:0008285 GO:GO:0016568 GO:GO:0031061 GO:GO:0035097 GO:GO:0035098 GO:GO:0035098 GO:GO:0042127 GO:GO:0045892 GO:GO:0048536 GO:GO:0048538 GO:GO:0048863 GO:GO:0051574 MGI_trans_name:Jarid2-001 PDB:2RQ5 Vega_translation:214401 Vega_translation:OTTMUSP00000054205 goslim_goa:GO:0001071 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0008150 goslim_goa:GO:0009058 goslim_goa:GO:0030154 goslim_goa:GO:0034641 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 goslim_goa:GO:0051276 protein_id:AAH03374.1 protein_id:AAH52444.1 protein_id:AAH60695.1 protein_id:BAA06736.1 protein_id:BAC32264.1 protein_id:BAE27780.1 protein_id:BAE37641.1 protein_id:EDL41007.1 OTTP:OTTMUSP00000054205 OTTT:OTTMUST00000096894 Reactome:R-MMU-212165 Reactome:R-MMU-212300 Reactome:R-MMU-74160 UniParc:UPI000000406B
definition	note : transcript_id=ENSMUST00000173246 protein_id : ENSMUSP00000134205 translation : MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNAQKRQHGEGLAGSLKAVNGLLGNAQAKALGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQSQPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQDEEDVEEEDDETEDVKATTNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSAREKEPAHKHRSKEATPGKEKHSEPRADSRREQASGAQPTAASAAASSAKGLAANHQPPPSHRSAQDLRKQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKYTATVTKGTVTYTKAKRELVKETKPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPAASGLKASSRLNPKSCTKEVGGRQLREGLRNSKRRLEEAQQVDKPQSPPKKMKGVAGNAEAPGKKASAASGEKSLLNGHVKKEVPERSLERNRPKRAAAGKNMLGKQAHGKTEGTPCENRSTSQPESSHKPHDPQGKPEKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKYGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKEVLMEKEILEKRKGPLEGHTESDHHKFHSLPRFEPKNGLVHGVTPRNGFRSKLKEVGRAPLKTGRRRLFAQEKEVVKEEEEDKGVLNDFHKCIYKGRSVSLTTFYRTARNIMNMCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSILRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQGNGTPGLQMLESNVMISPEVLCKKGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYNVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDELRDTELRQRRLLFEAGLHSSARYGSHDGNSTVADGKKKPRKWLQLETSERRCQICQHLCYLSMVVQENENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKVSGKHGGIENCLNKPTPKRGPRKRATVDVPPSRLPSS

name	Jarid2 (ENSMUSG00000038518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Jarid2-014 Vega_transcript:OTTMUST00000096898 Uniprot/SPTREMBL:G3UYY7 UCSC:uc007qgt.2 EMBL:AC166074 EMBL:AC170597 GO:GO:0000122 GO:GO:0001889 GO:GO:0003677 GO:GO:0005515 GO:GO:0005634 GO:GO:0008285 GO:GO:0035098 GO:GO:0042127 GO:GO:0045892 GO:GO:0048536 GO:GO:0048538 MGI_trans_name:Jarid2-014 Vega_translation:214403 Vega_translation:OTTMUSP00000054207 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 OTTP:OTTMUSP00000054207 OTTT:OTTMUST00000096898 UniParc:UPI00021CF76A
definition	note : transcript_id=ENSMUST00000172977 protein_id : ENSMUSP00000134276 translation : MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNAQKRQHGEGLAGSLKAVNGPGCKHKGSLLNLSRIVPAQLQ

name	Jarid2 (ENSMUSG00000038518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Jarid2-006 Vega_transcript:OTTMUST00000096901 Uniprot/SPTREMBL:G3UZT8 UCSC:uc007qgv.1 EMBL:AC166074 EMBL:AC170597 GO:GO:0000122 GO:GO:0001889 GO:GO:0003677 GO:GO:0005515 GO:GO:0005634 GO:GO:0008285 GO:GO:0035098 GO:GO:0042127 GO:GO:0045892 GO:GO:0048536 GO:GO:0048538 MGI_trans_name:Jarid2-006 Vega_translation:214404 Vega_translation:OTTMUSP00000054208 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 OTTP:OTTMUSP00000054208 OTTT:OTTMUST00000096901 UniParc:UPI00021CF76B
definition	note : transcript_id=ENSMUST00000173906 protein_id : ENSMUSP00000134630 translation : MAAPRVCQVQFLVAYLEEPGIEGLLGNAQAKALGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQSQPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQDEEDVEEEDDETEDVKATTNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSAREKEPAHKHRSKEATPGKEKHSEPRADSRREQASGAQPTAASAAASSAKGLAANHQPPPSHRSAQDLRKQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKYTATVTKGTVTYTKAKRELVKETKPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPAASGLKASSRLNPKSCTKEVGGRQLREGLRNSKRRLEEAQQVDKPQSPPKKMKGVAGNAEAPGKKASAASGEKSLLNGHVKKEVPERSLERNRPKRAAAGKNMLGKQAHGKTEGTPCENRSTSQPESSHKPHDPQGKPEKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKYGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKEVLMEKEILEKRKGPLEGHTESDHHKFHSLPRFEPKNGLVHGVTPRNGFRSKLKEVGRAPLKTGRRRLFAQEKEVVKEEEEDKGVLNDFHKCIYKGRSVSLTTFYRTARNIMNMCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSILRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQGNGTPGLQMLESNVMISPEVLCKKGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYNVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAE

name	Jarid2 (ENSMUSG00000038518) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Jarid2-008 Vega_transcript:OTTMUST00000096902 Uniprot/SPTREMBL:G3UZ12 EMBL:AC166074 EMBL:AC170597 GO:GO:0000122 GO:GO:0001889 GO:GO:0003677 GO:GO:0005515 GO:GO:0005634 GO:GO:0008285 GO:GO:0035098 GO:GO:0042127 GO:GO:0045892 GO:GO:0048536 GO:GO:0048538 MGI_trans_name:Jarid2-008 Vega_translation:214405 Vega_translation:OTTMUSP00000054209 goslim_goa:GO:0002376 goslim_goa:GO:0003674 goslim_goa:GO:0003677 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0008150 goslim_goa:GO:0043226 goslim_goa:GO:0043234 goslim_goa:GO:0048856 OTTP:OTTMUSP00000054209 OTTT:OTTMUST00000096902 UniParc:UPI00021CF76C
definition	note : transcript_id=ENSMUST00000173003 protein_id : ENSMUSP00000134302 translation : MAAPRVCQVQFLVAYLEEPGIEGPGCKHKGSLLNLSRIVPAQLQ

name
type	misc_feature
link
xref
definition	note : contig AC166074.3 23390..224712(1)

name	Jarid2 (ENSMUSG00000038518)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000096893 Vega_transcript:OTTMUST00000096893 MGI_trans_name:Jarid2-016 OTTT:OTTMUST00000096893
definition	note : processed_transcript note : transcript_id=ENSMUST00000172708

name	Jarid2 (ENSMUSG00000038518)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000096896 Vega_transcript:OTTMUST00000096896 MGI_trans_name:Jarid2-004 OTTT:OTTMUST00000096896
definition	note : retained_intron note : transcript_id=ENSMUST00000174557

name	Jarid2 (ENSMUSG00000038518)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000096897 Vega_transcript:OTTMUST00000096897 MGI_trans_name:Jarid2-005 OTTT:OTTMUST00000096897
definition	note : retained_intron note : transcript_id=ENSMUST00000174683

name	Jarid2 (ENSMUSG00000038518)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000096899 Vega_transcript:OTTMUST00000096899 MGI_trans_name:Jarid2-010 OTTT:OTTMUST00000096899
definition	note : processed_transcript note : transcript_id=ENSMUST00000172924

name	Jarid2 (ENSMUSG00000038518)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000096900 Vega_transcript:OTTMUST00000096900 MGI_trans_name:Jarid2-012 OTTT:OTTMUST00000096900
definition	note : processed_transcript note : transcript_id=ENSMUST00000172581

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Jarid2 (ENSMUSG00000038518)
Transcript ID	ENSMUST00000173906

Reports
substitution
cSNPs	4
Insertion	48
Deletion	53
SNPs	-1kb 44836023(c.-4791C>A), 44836558(c.-4256G>A), 44836602(c.-4212A>C), 44836817(c.-3997G>T), 44836840(c.-3974A>G), 44836911(c.-3903C>G), 44836966(c.-3848T>C), 44837099(c.-3715A>G), 44837192(c.-3622G>C), 44837210(c.-3604G>A), 44837212(c.-3602C>A), 44837242(c.-3572T>A), 44837354(c.-3460T>C), 44837759(c.-3055G>C), 44837800(c.-3014T>G), 44837982(c.-2832T>C), 44838060(c.-2754A>G), 44838076(c.-2738C>T), 44838079(c.-2735A>G), 44838283(c.-2531T>C), 44838287(c.-2527A>G), 44838300(c.-2514C>A), 44838677(c.-2137C>A), 44838773(c.-2041C>T), 44838789(c.-2025T>C), 44839269(c.-1545T>C), 44839627(c.-1187A>G), 44839782(c.-1032A>C), 44839817(c.-997G>C), 5'UTR CDS 44848309(c.97C>T), 44906567(c.2160C>T), 44907583(c.2418T>C), 44913722(c.2904C>T), 3'UTR INTRON 44841273(c.67+393T>G), 44841601(c.67+721G>A), 44841808(c.67+928C>T), 44842504(c.67+1624G>C), 44842580(c.67+1700A>C), 44842611(c.67+1731C>T), 44844046(c.67+3166C>T), 44844722(c.68-3558G>T), 44844891(c.68-3389T>A), 44845209(c.68-3071G>A), 44845431(c.68-2849T>C), 44845733(c.68-2547G>A), 44846429(c.68-1851G>A), 44846783(c.68-1497G>A), 44847264(c.68-1016A>G), 44847324(c.68-956C>T), 44847488(c.68-792A>G), 44847508(c.68-772T>C), 44848488(c.209+67C>T), 44848809(c.209+388G>A), 44848841(c.209+420T>A), 44848854(c.209+433T>C), 44848971(c.209+550C>T), 44849676(c.209+1255G>A), 44849920(c.209+1499G>T), 44850697(c.209+2276A>G), 44851711(c.209+3290T>G), 44851752(c.209+3331G>T), 44851940(c.209+3519A>G), 44852273(c.209+3852T>C), 44852425(c.209+4004C>T), 44852434(c.209+4013C>T), 44852469(c.209+4048T>G), 44852612(c.209+4191G>T), 44852802(c.209+4381G>A), 44853330(c.209+4909C>T), 44853557(c.209+5136C>T), 44853567(c.209+5146C>G), 44853589(c.209+5168A>T), 44853590(c.209+5169C>A), 44853669(c.209+5248G>C), 44853681(c.209+5260A>G), 44853753(c.209+5332T>C), 44853907(c.209+5486T>G), 44853926(c.209+5505C>T), 44854011(c.209+5590C>A), 44854144(c.209+5723G>C), 44854388(c.209+5967A>G), 44854414(c.209+5993C>T), 44854463(c.209+6042C>T), 44854507(c.209+6086T>G), 44854538(c.209+6117G>A), 44854606(c.209+6185G>A), 44854774(c.209+6353C>T), 44854808(c.209+6387G>A), 44855001(c.209+6580T>C), 44855501(c.209+7080G>C), 44855614(c.209+7193G>T), 44855734(c.209+7313A>G), 44855818(c.209+7397G>A), 44856059(c.209+7638G>A), 44856068(c.209+7647C>T), 44856221(c.209+7800C>T), 44856425(c.209+8004A>G), 44856535(c.209+8114A>G), 44856738(c.209+8317A>C), 44856755(c.209+8334T>A), 44856827(c.209+8406C>T), 44856867(c.209+8446T>C), 44856909(c.209+8488G>T), 44857183(c.209+8762G>T), 44857238(c.209+8817G>T), 44857432(c.209+9011C>T), 44857433(c.209+9012G>T), 44857921(c.209+9500T>C), 44857983(c.209+9562T>C), 44858135(c.209+9714C>G), 44858181(c.209+9760T>C), 44858401(c.209+9980C>T), 44858571(c.209+10150C>T), 44858852(c.209+10431T>A), 44858853(c.209+10432G>T), 44858854(c.209+10433G>T), 44858868(c.209+10447G>A), 44858872(c.209+10451G>A), 44859050(c.209+10629G>A), 44859352(c.209+10931T>C), 44859397(c.209+10976A>G), 44859410(c.209+10989G>A), 44859494(c.209+11073C>T), 44859551(c.209+11130T>C), 44859691(c.209+11270C>A), 44859704(c.209+11283G>A), 44860062(c.209+11641G>C), 44860384(c.209+11963A>T), 44860672(c.209+12251T>C), 44860693(c.209+12272T>G), 44860816(c.209+12395C>T), 44861364(c.210-12919T>C), 44861523(c.210-12760G>A), 44861625(c.210-12658C>T), 44861717(c.210-12566T>G), 44862256(c.210-12027G>A), 44862341(c.210-11942A>C), 44862553(c.210-11730T>G), 44863092(c.210-11191G>T), 44863125(c.210-11158G>A), 44863314(c.210-10969C>T), 44863496(c.210-10787A>G), 44863532(c.210-10751T>C), 44863719(c.210-10564G>A), 44864077(c.210-10206T>C), 44864141(c.210-10142C>T), 44864300(c.210-9983G>A), 44864305(c.210-9978C>T), 44864367(c.210-9916T>G), 44864472(c.210-9811G>A), 44864545(c.210-9738G>A), 44864588(c.210-9695C>G), 44864737(c.210-9546C>T), 44865115(c.210-9168C>T), 44865154(c.210-9129G>A), 44865367(c.210-8916T>G), 44865497(c.210-8786G>T), 44865523(c.210-8760C>T), 44866176(c.210-8107G>A), 44866244(c.210-8039C>T), 44866388(c.210-7895G>C), 44866399(c.210-7884C>A), 44866548(c.210-7735T>C), 44866769(c.210-7514C>T), 44866787(c.210-7496G>A), 44866895(c.210-7388A>C), 44866929(c.210-7354T>C), 44866939(c.210-7344T>C), 44867153(c.210-7130C>T), 44867161(c.210-7122A>C), 44867267(c.210-7016G>A), 44867334(c.210-6949A>T), 44867336(c.210-6947T>G), 44867337(c.210-6946A>T), 44867355(c.210-6928T>C), 44867376(c.210-6907C>A), 44867591(c.210-6692T>C), 44867642(c.210-6641C>A), 44867704(c.210-6579G>A), 44867730(c.210-6553C>T), 44867767(c.210-6516C>T), 44867809(c.210-6474T>C), 44868027(c.210-6256A>G), 44868045(c.210-6238G>A), 44868227(c.210-6056G>T), 44868672(c.210-5611A>C), 44868767(c.210-5516G>A), 44869186(c.210-5097A>G), 44869724(c.210-4559A>G), 44869753(c.210-4530C>T), 44870036(c.210-4247C>T), 44870737(c.210-3546G>A), 44870748(c.210-3535A>C), 44870763(c.210-3520C>T), 44871292(c.210-2991C>T), 44871357(c.210-2926C>T), 44871360(c.210-2923A>G), 44871453(c.210-2830C>G), 44871473(c.210-2810G>A), 44871629(c.210-2654T>G), 44871675(c.210-2608A>G), 44871871(c.210-2412C>G), 44871888(c.210-2395G>C), 44871918(c.210-2365C>A), 44871926(c.210-2357C>T), 44872143(c.210-2140G>C), 44872199(c.210-2084T>G), 44872821(c.210-1462C>T), 44873069(c.210-1214A>C), 44873684(c.210-599G>A), 44873817(c.210-466T>C), 44874510(c.379+58G>A), 44874605(c.379+153T>C), 44874831(c.379+379C>A), 44874886(c.379+434A>C), 44875467(c.379+1015A>T), 44875472(c.379+1020A>T), 44875558(c.379+1106A>C), 44876295(c.379+1843T>C), 44877238(c.379+2786G>A), 44877290(c.379+2838C>A), 44877891(c.379+3439T>G), 44877941(c.379+3489G>T), 44877951(c.379+3499C>T), 44878151(c.379+3699C>T), 44878190(c.379+3738A>G), 44878373(c.379+3921C>A), 44878809(c.379+4357A>C), 44878983(c.379+4531T>C), 44879267(c.379+4815G>C), 44879271(c.379+4819G>C), 44879275(c.379+4823G>C), 44879279(c.379+4827G>C), 44879369(c.379+4917G>T), 44879696(c.380-5008A>C), 44879699(c.380-5005A>T), 44879747(c.380-4957T>A), 44879858(c.380-4846T>A), 44882088(c.380-2616C>T), 44882258(c.380-2446T>C), 44882744(c.380-1960C>A), 44884456(c.380-248A>C), 44885264(c.556+384G>A), 44885397(c.556+517G>A), 44885689(c.556+809C>A), 44885904(c.556+1024T>C), 44885972(c.556+1092G>A), 44886299(c.556+1419T>C), 44886372(c.556+1492G>A), 44886597(c.556+1717T>C), 44886610(c.556+1730T>G), 44886803(c.556+1923C>T), 44887362(c.556+2482C>A), 44887453(c.556+2573G>T), 44887525(c.556+2645G>T), 44888404(c.556+3524T>C), 44888494(c.556+3614C>G), 44888546(c.556+3666T>C), 44889232(c.556+4352G>A), 44889349(c.556+4469C>T), 44889577(c.556+4697C>T), 44889821(c.556+4941C>T), 44890498(c.556+5618A>G), 44890695(c.557-5559G>C), 44891050(c.557-5204G>T), 44891071(c.557-5183G>A), 44891092(c.557-5162A>T), 44891142(c.557-5112G>A), 44891143(c.557-5111C>T), 44892988(c.557-3266C>G), 44893587(c.557-2667A>G), 44893644(c.557-2610A>C), 44893949(c.557-2305T>C), 44894677(c.557-1577T>C), 44894797(c.557-1457T>C), 44894813(c.557-1441T>G), 44894835(c.557-1419T>C), 44895009(c.557-1245T>A), 44895010(c.557-1244A>G), 44895020(c.557-1234A>T), 44895982(c.557-272G>T), 44896580(c.792+91A>G), 44897078(c.792+589G>T), 44897483(c.792+994C>T), 44897540(c.792+1051C>A), 44897926(c.792+1437A>G), 44898239(c.792+1750A>G), 44898498(c.792+2009T>C), 44898588(c.792+2099T>C), 44899133(c.792+2644G>C), 44899435(c.793-2791A>G), 44899718(c.793-2508A>C), 44900500(c.793-1726A>G), 44900537(c.793-1689T>A), 44900623(c.793-1603A>G), 44900979(c.793-1247T>G), 44901080(c.793-1146C>T), 44901215(c.793-1011C>T), 44901272(c.793-954C>A), 44901305(c.793-921C>T), 44901309(c.793-917A>C), 44901804(c.793-422A>G), 44902005(c.793-221C>T), 44902012(c.793-214G>A), 44902098(c.793-128G>A), 44903725(c.1825+467G>T), 44903939(c.1825+681A>T), 44904672(c.1825+1414T>C), 44904714(c.1825+1456C>T), 44905037(c.1826-1196A>G), 44905328(c.1826-905G>C), 44906751(c.2328+16G>A), 44906780(c.2328+45G>A), 44906809(c.2328+74G>A), 44906819(c.2328+84G>A), 44906822(c.2328+87G>A), 44906836(c.2328+101C>T), 44906881(c.2328+146C>G), 44906991(c.2328+256G>A), 44907058(c.2328+323A>G), 44907443(c.2329-51T>C), 44907675(c.2421+89T>C), 44907701(c.2421+115A>G), 44908391(c.2421+805C>T), 44908492(c.2421+906G>A), 44908816(c.2421+1230G>A), 44909141(c.2422-1202T>C), 44909218(c.2422-1125C>G), 44909220(c.2422-1123C>G), 44911500(c.2726+220C>A), 44912037(c.2726+757G>A), 44912446(c.2727-735G>A), 44913421(c.2832+135C>A), 44913523(c.2833-128C>T), 44914059(c.3016-187A>G), 44914075(c.3016-171G>T), 44914085(c.3016-161T>G), 44914117(c.3016-129A>C), +1kb 44914368(c.49T>C), 44914647(c.328C>T), 44914790(c.471T>A), 44915249(c.930A>G), 44915396(c.1077C>A), 44915410(c.1091C>A), 44915561(c.1242C>T), 44915675(c.1356T>C), 44915695(c.1376A>G), 44915717(c.1398A>G), 44915751(c.1432A>G), 44915829(c.1510G>C), 44916084(c.1765A>G), 44916232(c.1913T>C), 44916643(c.2324G>C), 44917037(c.2718C>T), 44917308(c.2989C>A), 44917885(c.3566G>A), 44918330(c.4011G>A), 44918997(c.4678T>G),
Insertions	-1kb 44835992 (c.-4822_-4821insT), 44836627 (c.-4187_-4186insGAT), 44837970 (c.-2844_-2843insAGTAACTA), 44838992 (c.-1822_-1821insTGAG), 5'UTR CDS 3'UTR INTRON 44846360 (c.68-1920_68-1919insGT), 44851089 (c.209+2668_209+2669insATAT), 44851101 (c.209+2680_209+2681insCC), 44851790 (c.209+3369_209+3370insGCTCCC), 44853590 (c.209+5169_209+5170insTT), 44858836 (c.209+10422dupT), 44863489 (c.210-10793_210-10790dupGTTG), 44864109 (c.210-10173_210-10169dupTCAAT), 44864613 (c.210-9671_210-9670dupTT), 44865664 (c.210-8613dupT), 44866041 (c.210-8240dupA), 44866304 (c.210-7982_210-7979dupTTTT), 44868398 (c.210-5884dupT), 44868513 (c.210-5760dupT), 44868522 (c.210-5760dupT), 44868993 (c.210-5288_210-5287insCTT), 44869735 (c.210-4551_210-4548dupTACC), 44869824 (c.210-4461_210-4459dupGAA), 44870159 (c.210-4123_210-4122insGA), 44870429 (c.210-3853dupT), 44871716 (c.210-2564dupC), 44871719 (c.210-2564dupC), 44871830 (c.210-2453_210-2452insAAA), 44871916 (c.210-2367_210-2366insG), 44871918 (c.210-2365_210-2364insG), 44872927 (c.210-1356_210-1355insC), 44874649 (c.379+198_379+201dupCCAC), 44876525 (c.379+2073_379+2074insG), 44881519 (c.380-3185dupA), 44887425 (c.556+2554dupT), 44887938 (c.556+3060dupG), 44891010 (c.557-5241_557-5240dupTT), 44895683 (c.557-570dupC), 44895863 (c.557-391_557-390insA), 44895870 (c.557-383dupA), 44898008 (c.792+1521_792+1522insGGTG), 44899550 (c.793-2671dupA), 44900947 (c.793-1272_793-1271dupTT), 44908391 (c.2421+812_2421+816dupTTTTT), 44910497 (c.2540+37_2540+38insTT), 44911296 (c.2726+16dupC), 44912189 (c.2726+910_2726+911insATCCTGG), 44913502 (c.2833-147dupG), +1kb 44918012 (c.3693_3694insC),
Deletions	-1kb 44836241 (c.-4572_-4570delTTT), 44836665 (c.-4148_-4146delATT), 44836669 (c.-4144_-4142delTTA), 44838739 (c.-2074_-2073delTA), 44839275 (c.-1538_-1537delGC), 44839842 (c.-971_-968delCTCC), 5'UTR CDS 3'UTR INTRON 44842134 (c.67+1267delT), 44842689 (c.67+1821_67+1823delGTT), 44846513 (c.68-1764_68-1759delCCTTTT), 44847443 (c.68-836_68-835delAT), 44850927 (c.209+2526delT), 44851085 (c.209+2665_209+2666delGC), 44851448 (c.209+3040_209+3046delGGTAGAA), 44855867 (c.209+7461_209+7464delCCCT), 44857411 (c.209+8991_209+8998delACTCCCCC), 44857566 (c.209+9150_209+9153delTTGT), 44860790 (c.209+12378_209+12381delGTGT), 44861290 (c.209+12880delA), 44863263 (c.210-11013_210-11010delTATT), 44865079 (c.210-9199_210-9196delACAG), 44865264 (c.210-9018_210-9012delCCCTCCT), 44865476 (c.210-8798delT), 44866383 (c.210-7897_210-7894delGGGC), 44866621 (c.210-7659delG), 44866970 (c.210-7310_210-7305delTTTTTT), 44867338 (c.210-6944_210-6939delTAACCA), 44867668 (c.210-6597delT), 44867986 (c.210-6296_210-6295delTT), 44868005 (c.210-6275_210-6268delTGATAAGT), 44868495 (c.210-5787delT), 44870819 (c.210-3438_210-3435delAACA), 44871159 (c.210-3120delT), 44871897 (c.210-2385_210-2384delCA), 44872023 (c.210-2259_210-2252delTTTATTTA), 44873593 (c.210-689_210-685delGTTTT), 44873621 (c.210-650_210-646delTTTTT), 44877028 (c.379+2581_379+2587delTACTGTG), 44879697 (c.380-5004delA), 44881045 (c.380-3650delA), 44881639 (c.380-3060_380-3058delAAA), 44882845 (c.380-1852_380-1851delTC), 44893344 (c.557-2907_557-2906delTC), 44894778 (c.557-1475_557-1474delTT), 44895857 (c.557-396_557-389delTTTTTTTT), 44904905 (c.1826-1323delT), 44906827 (c.2328+94delG), 44909192 (c.2422-1137_2422-1136delCT), 44909328 (c.2422-1014delT), 44909351 (c.2422-991_2422-985delACACACA), 44911377 (c.2726+98_2726+101delTAGG), 44911417 (c.2726+138delC), 44913338 (c.2832+54delG), +1kb 44915130 (c.*812delT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	4
non-synonymous num	0
synonymous substitutions	44848309 (p.Leu33Leu), 44906567 (p.Leu720Leu), 44907583 (p.Ile806Ile), 44913722 (p.Val968Val),
non-synonymous substitutions
B6 transcript (ENSMUST00000173906)	MAAPRVCQVQFLVAYLEEPGIEGLLGNAQAKALGPASEQSENEKDDASQVSSTSNDVSSS DFEEGPSRKRPRLQAQRKFAQSQPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTEDFL TFLCLRGSPALPNSMVYFGSSQDEEDVEEEDDETEDVKATTNNASSSCQSTPRKGKTHKH VHNGHVFNGSSRSAREKEPAHKHRSKEATPGKEKHSEPRADSRREQASGAQPTAASAAAS SAKGLAANHQPPPSHRSAQDLRKQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKY TATVTKGTVTYTKAKRELVKETKPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASK STGPAASGLKASSRLNPKSCTKEVGGRQLREGLRNSKRRLEEAQQVDKPQSPPKKMKGVA GNAEAPGKKASAASGEKSLLNGHVKKEVPERSLERNRPKRAAAGKNMLGKQAHGKTEGTP CENRSTSQPESSHKPHDPQGKPEKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQ VEKYGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGI TMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEA YCQYLLSYDSLSPEEHRRLEKEVLMEKEILEKRKGPLEGHTESDHHKFHSLPRFEPKNGL VHGVTPRNGFRSKLKEVGRAPLKTGRRRLFAQEKEVVKEEEEDKGVLNDFHKCIYKGRSV SLTTFYRTARNIMNMCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVG KSEPFSRHGWNLTVLPNNTGSILRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDY LHTGADCIWYCIPAEEENKLEDVVHTLLQGNGTPGLQMLESNVMISPEVLCKKGIKVHRT VQQSGQFVVCFPGSFVSKVCCGYNVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEK LLYQIAQAE
MSMv4 transcript	MAAPRVCQVQFLVAYLEEPGIEGLLGNAQAKALGPASEQSENEKDDASQVSSTSNDVSSS DFEEGPSRKRPRLQAQRKFAQSQPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTEDFL TFLCLRGSPALPNSMVYFGSSQDEEDVEEEDDETEDVKATTNNASSSCQSTPRKGKTHKH VHNGHVFNGSSRSAREKEPAHKHRSKEATPGKEKHSEPRADSRREQASGAQPTAASAAAS SAKGLAANHQPPPSHRSAQDLRKQVSKVNGVTRMSSLGAGTNSAKKIREVRPSPSKTVKY TATVTKGTVTYTKAKRELVKETKPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASK STGPAASGLKASSRLNPKSCTKEVGGRQLREGLRNSKRRLEEAQQVDKPQSPPKKMKGVA GNAEAPGKKASAASGEKSLLNGHVKKEVPERSLERNRPKRAAAGKNMLGKQAHGKTEGTP CENRSTSQPESSHKPHDPQGKPEKGSGKSGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQ VEKYGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLRSQGI TMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEA YCQYLLSYDSLSPEEHRRLEKEVLMEKEILEKRKGPLEGHTESDHHKFHSLPRFEPKNGL VHGVTPRNGFRSKLKEVGRAPLKTGRRRLFAQEKEVVKEEEEDKGVLNDFHKCIYKGRSV SLTTFYRTARNIMNMCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVG KSEPFSRHGWNLTVLPNNTGSILRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDY LHTGADCIWYCIPAEEENKLEDVVHTLLQGNGTPGLQMLESNVMISPEVLCKKGIKVHRT VQQSGQFVVCFPGSFVSKVCCGYNVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEK LLYQIAQAE
homology	100.00 (1029 / 1029)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Jarid2 (ENSMUSG00000038518)
Transcript ID	ENSMUST00000173906


..........AGCATGTGGGTAGTGTAAAGCGTGTATTCTGCACATCAGCATTGTCAGAT
GAAGCTCAAAAGCTTCAAAGGAAATAAATGACGTTGAAAATCAAAAAAGACAGACAGACA
GACAGACAGACAGACACACACACACACACACACACACACACACTCCCTCCCTCCAGCTAC
TGGAGGCCAGTTGGATGCCTGCCTTTTTCACCCCTCTCAGCAGCTGCCAGGCTACAGAGC
CTGTTTTGTGAAAGATCAAGAAACAATGAGGGAAAACAGCTTCAGCTTGATTAGATTAGA
TCAATTTATGTGCCTGGGGAGGGGCCTAGGCAGGGCTGGGGGAGGGGTGTCCTGTGCTGG
CAGTGGCCCATGCCTGCCCATTCGGTCACTTCATAAGTAATGAAGCTCCCGTGGTGGCTG
GAATTGCAGGAAGGGGGAGGGAGGAGGTGGAGGAGGAGCATGTGAAGAGAGATTTCTGCA
GTCTGTCTGGAGAGCTGCCCAGGGTTCCCAGCCAAAAAAACAAACAAAAATAAATAAAAG
CCAAGTGCTGAATGACACAGATTATGATATTAAAAAGGGATACTATTGAAACATTGCCCT
GTTTCCTACTGTTGTTGGAAATGGGTGTGTGCAGAAGCGAGGGGCGGTTAGTGCACTGTA
CAACAGGCCATTCCTTGGACACAAAAGTCCGTACAATTAAATTGTGAATGCCCCTCGCCA
ACGTCCCCTCCCCCACCTCATGCCAGAAATTCTGTAATTTTGATTTGTCTGCATTGCAGG
TCATGGAAATAGCAGGATGGAAAGCTAGTTTCTTTTGCCTTTTCTCATTTTAATTCATCA
AAATGGTAAAAAGCGGGGAGGGGGAAAGTCAGCCAGATGCCCCCTCCTTTTCAGTGTTCA
ATTCTCTTCCAGGCACATAAATAATCTTCTCTCCCGACTGTCTCCCCTCCCCCTTGGCCC
CCGCTGGTGTTCGGCTGTCCTATTGCCGCGCGGAATCTGCACTGCCGCTT
GCTTATTACGTACAGGGGAGGATTGTTGACAAGTGCTCCGGAGCCTGCCTCACTGCGCTCTCCCTTCCTCCCTCCCTTCCTCTGTCCTTCTTCCTCTGTCTCTGCAATGATCCGGCTCTGAGGATGGCTGCTCCACGGGTCTGTCAGGTGCAGTTTTTGGTGGCTTATCTTGAGGAACCTGGGATAGAAG
GTCTGTTCCTATAAATAAAAGAAAA..........TGTTTGTCCCTTTTCTCACCTGTAG
GGCTTCTTGGTAATGCCCAGGCTAAGGCATTAGGACCAGCCTCAGAGCAGTCAGAGAACGAGAAGGATGATGCCTCCCAAGTGTCCTCTACTAGCAACGATGTTAGTTCTTCAGATTTTGAAGAAGGGCCGTCGAGGAAAAG
GTTAGTACCCAAGCATTAGTGAATA..........TTTTACATTTCTTTTGTTGTTGCAG
GCCCAGGCTGCAAGCACAAAGGAAGTTTGCTCAATCTCAGCCGAATAGTCCCAGCACAACTCCAGTGAAGATAGTGGAGCCTTTGCTACCCCCGCCAGCTACTCAAATTTCTGACCTCTCTAAAAGGAAGCCTAAGACAGAAGACTTTCTTACCTTTCTCTGCCTTCGAG
GTAAGCTTGGAGGACACATGGCACC..........GAACTACATATGTTAAACCCATCAG
GTTCTCCTGCGCTGCCCAACAGTATGGTATATTTTGGAAGCTCTCAGGATGAGGAGGATGTCGAAGAGGAAGATGATGAGACGGAAGATGTCAAAGCAACCACCAACAATGCTTCATCTTCGTGCCAGTCAACCCCCAGGAAAGGAAAAACCCATAAGCATGTACACAACGGGCACG
GTAGGTTCACCGTGGAGGCTGTGTG..........TTCTTCCCTTCTCTTCCTTTTCTAG
TTTTCAATGGCTCCAGTAGGTCAGCACGGGAGAAAGAGCCTGCTCACAAACACAGAAGCAAAGAGGCCACTCCGGGGAAGGAGAAGCACAGCGAGCCCAGGGCAGACAGCCGGAGAGAACAGGCTTCAGGGGCTCAGCCCACGGCCGCCTCGGCTGCGGCTTCCTCTGCCAAGGGACTTGCTGCCAACCACCAACCTCCCCCTTCGCATCGGTCTGCTCAGGACTTACGGAAACAG
GTAACCCTCAGTGAGGGCCTTTCTA..........TCCCCTGCTTCTGCTGCCTCCATAG
GTGTCTAAGGTAAATGGAGTCACTCGAATGTCATCTCTGGGTGCAGGTACAAACAGTGCCAAAAAGATCCGAGAAGTCAGACCTTCACCATCCAAAACTGTGAAGTACACTGCCACAGTGACCAAGGGGACTGTCACATACACCAAAGCCAAGAGAGAACTGGTCAAGGAAACCAAACCCAACCACCACAAACCCAGTTCAGCTGTCAACCACACAATCTCAGGGAAAACTGAAAGTAGCAATGCAAAAACCCGCAAACAGGTGCTATCCCTTGGGGGGGCGTCCAAGTCCACCGGGCCTGCTGCCAGTGGCCTCAAGGCCAGCAGCAGGTTGAACCCAAAGTCATGCACTAAGGAGGTGGGGGGGCGGCAGCTGAGGGAGGGGCTGCGGAATTCCAAAAGGAGACTGGAAGAGGCACAGCAAGTGGACAAGCCGCAGTCACCCCCCAAGAAGATGAAGGGGGTGGCAGGCAATGCTGAAGCCCCTGGCAAAAAGGCCTCAGCGGCTTCAGGAGAAAAGTCTCTGCTGAATGGACACGTGAAGAAGGAAGTGCCCGAGCGAAGTTTGGAAAGGAATCGGCCAAAGCGGGCCGCGGCTGGCAAGAATATGCTGGGCAAACAAGCACATGGCAAGACAGAGGGCACCCCCTGTGAAAATCGTTCTACCTCGCAACCCGAGTCCTCGCACAAGCCGCATGACCCACAGGGCAAGCCAGAGAAGGGGAGCGGCAAGTCTGGGTGGGCAGCGATGGACGAGATCCCTGTCCTCAGGCCCTCCGCCAAGGAGTTCCACGACCCGCTCATCTACATCGAGTCAGTACGTGCTCAGGTGGAGAAGTACGGGATGTGTCGCGTGATTCCCCCTCCAGACTGGCGGCCAGAGTGCAAGCTCAACGATGAGATGCGCTTTGTCACGCAGATCCAGCACATCCATAAGCTGGGCCGGCGCTGGGGCCCCAACGTGCAGCGGCTAGCCTGCATAAAGAAGCACCTCAGATCTCAGGGCATCACCATGGATGAGCTCCCCCTCATAG
GTGAGTTAATTCGGGGATTGCCGGG..........ACCATTTCACCCCATTGCTGCCCAG
GAGGCTGTGAGCTCGACCTGGCCTGCTTTTTCCGGCTGATTAATGAGATGGGCGGCATGCAGCAAGTGACTGACCTCAAAAAATGGAACAAACTAGCAGACATGCTGCGCATTCCCAAAACTGCCCAGGACCGGCTGGCCAAGCTGCAGGAGGCCTACTGCCAGTACCTGCTTTCCTATGACTCCCTGTCCCCCGAGGAGCACCGACGGCTGGAGAAGGAGGTGCTGATGGAGAAGGAGATCCTGGAAAAGCGCAAAGGGCCATTAGAGGGGCACACGGAGAGCGACCACCACAAGTTCCACTCCCTGCCCCGCTTTGAGCCCAAGAATGGGCTTGTCCACGGTGTCACACCTAGGAATGGATTCCGTAGCAAGCTCAAGGAGGTGGGCCGGGCCCCACTGAAGACGGGCCGGCGGCGGCTGTTCGCTCAGGAAAAAGAAGTGGTCAAAGAGGAGGAAGAAGACAAAGGTGTCCTCAATGACTTCCACAAGTGCATCTATAAG
GTGAGTGGGCTGTGCAGTAGGGTGT..........TCTTCTTCTGTTTTCTTTGTTTCAG
GGAAGATCTGTTTCTCTAACAACTTTTTATCGAACAGCAAGAAACATCATGAACATGTGTTTCAGCAAGGAGCCCGCACCAGCAGAGATCGAG
GTAAGTAAGTTAGCCATCTCCATAC..........GACTGGTTTTTCCTCTTGTCAACAG
CAAGAGTACTGGAGGTTAGTGGAAGAGAAGGACTGTCATGTGGCAGTTCACTGCGGAAAGGTGGACACTAATACCCATGGCAGCGGGTTCCCGGTGGGAAAATCAGAACCCTTTTCAAG
GTAATTGTACATTATCTTGTCCGTG..........GACAGCCCCTTCTTTCCCTCTGCAG
GCATGGATGGAACCTCACTGTCCTCCCAAATAACACAGGGTCCATCCTGCGTCACCTTGGTGCTGTGCCTG
GTAAGTATGACCTGATCTCTTCTGG..........TTAATGACATCTCTTTATGTTGTAG
GAGTGACTATTCCCTGGCTAAATATTGGCATGGTCTTTTCTACCTCATGCTGGTCTCGAGACCAAAATCACCTTCCATATATTGACTACTTACACACTGGTGCTGACTGCATTTG
GTGAGTACTCACCCCCAGCAGCAGG..........GTCTCTTGTCTTTCCACCACCCCAG
GTATTGCATTCCTGCTGAGGAGGAGAACAAGCTGGAGGACGTAGTCCACACTCTGCTGCAGGGCAATGGTACCCCAGGGCTGCAGATGCTGGAGAGCAATGTAATG
GTAGGTCTATTATTGTTAGAAAGTG..........CTCTCAGTTGGCACTCTCTCCCCAG
ATCTCCCCAGAGGTGCTGTGCAAGAAGGGGATCAAGGTCCACAGGACTGTACAGCAGAGTGGGCAGTTTGTTGTCTGCTTCCCGGGATCCTTTGTGTCCAAAGTATGTTGTGGCTACAACGTCTCAGAGACAGTGCACTTTGCTACCACCCAGTGGACAAGCATGGGCTTCGAGACTGCCAAG
GTAAGCAGAGCAGGCGTCCTTAGGT..........TTTGTAAAGGTGGTTCTTCTTTCAG
GAGATGAAGCGCCGCCATATAGCTAAGCCATTCTCCATGGAGAAGTTGCTCTACCAGATTGCACAAGCAGAAGC
AAAAAAGGAAAATGGTCCCACCCTCAGTACCATCTCAGCCCTTCTGGACGAGCTCAGGTA
GTGTAGACCCAGGTCTCAGGACCTCAGGGGAAGCAGGCCCAGGTGGAAGAAGCAGGTGGC
AGTTCCCTGAACTGCAGGCCACCTGCAGCTCATTAAGGACTGAAACTTTTTCCTTTGGTC
CTCTGCTATTCCTCCATCTTCCTGTCTGATAATGGGAAGCTCTTGGTGAGCTGATAATGA
AAAGTGCTCCCAAGCTCTTTGGGGTCAGTGCTGAACTTGCCTTTTGGTAATAATAGTATA
GAAAAGGAAGGTTGCTGGGCCTCTCTCTCCATGGCTGACCCTGTAGTCTAGTCTAAAGGG
GTGATGACATGTCCTTTTTAGTGGGAGCAGGTATTCATTGTGGGCATTTGACCTTCTGAT
GACACCCGCCACTTCCCTGCACAGGGATACAGAGCTGCGGCAGCGCAGGCAGTTGTTCGA
GGCTGGCCTTCACTCTTCTGCACGCTATGGCAGCCACGACGGCAACAGCACAGTGGCGGA
TGGGAAGAAAAAGCCTCGAAAGTGGCTACAGCTGGAAACTTCAGAAAGGAGGTGCCAGAT
CTGCCAGCACTTGTGCTACCTGTCCATGGTGAGTGTATGTGTGAGAGCCCAGTGTGACCC
ACCACGGCCTCAACACCAGGCCTACTTCAGGGCTTCCTTCAGACCCCAGCCTCCTCTCAC
TATGGTAGCAGGAGTGGGAGTCACTTGGCCACAGTGGGCAGTTCTATCTAGTACTGGTGC
ACTCCCCTAAATCCCTTGCTTTTTATACCACTTAGTACCACACCTACATTCTGTTACACC
TTCATACTGGGAAACACCCTCATGTTCCCAGCCTGTATCCTCCTCTGTGATTCTAAATTC
TATCAGGCTGGCAATAAAGATTAACCTCGGGGTTTTATTAATAGTAATAAATGTGTTTTG
CTTATAACCACTGAATTTGTGATTAGTTCTTAGAATCTTT..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AGCATGTGGGTAGTGTAAAGCGTGTATTCTGCACATCAGCATTGTCAGAT GAAGCTCAAAAGCTTCAAAGGAAATAAATGACGTTGAAAATCAAAAAAGACAGACAGACA GACAGACAGACAGACACACACACACACACACACACACACACACTCCCTCCCTCCAGCTAC TGGAGGCCAGTTGGATGCCTGCCTTTTTCACCCCTCTCAGCAGCTGCCAGGCTACAGAGC CTGTTTTGTGAAAGATCAAGAAACAATGAGGGAAAACAGCTTCAGCTTGATTAGATTAGA TCAATTTATGTGCCTGGGGAGGGGCCTAGGCAGGGCTGGGGGAGGGGTGTCCTGTGCTGG CAGTGGCCCATGCCTGCCCATTCGGTCACTTCATAAGTAATGAAGCTCCCGTGGTGGCTG GAATTGCAGGAAGGGGGAGGGAGGAGGTGGAGGAGGAGCATGTGAAGAGAGATTTCTGCA GTCTGTCTGGAGAGCTGCCCAGGGTTCCCAGCCAAAAAAACAAACAAAAATAAATAAAAG CCAAGTGCTGAATGACACAGATTATGATATTAAAAAGGGATACTATTGAAACATTGCCCT GTTTCCTACTGTTGTTGGAAATGGGTGTGTGCAGAAGCGAGGGGCGGTTAGTGCACTGTA CAACAGGCCATTCCTTGGACACAAAAGTCCGTACAATTAAATTGTGAATGCCCCTCGCCA ACGTCCCCTCCCCCACCTCATGCCAGAAATTCTGTAATTTTGATTTGTCTGCATTGCAGG TCATGGAAATAGCAGGATGGAAAGCTAGTTTCTTTTGCCTTTTCTCATTTTAATTCATCA AAATGGTAAAAAGCGGGGAGGGGGAAAGTCAGCCAGATGCCCCCTCCTTTTCAGTGTTCA ATTCTCTTCCAGGCACATAAATAATCTTCTCTCCCGACTGTCTCCCCTCCCCCTTGGCCC CCGCTGGTGTTCGGCTGTCCTATTGCCGCGCGGAATCTGCACTGCCGCTT
1	EXON 1	44,840,691	44,840,880	-	1	190	GCTTATTACGTACAGGGGAGGATTGTTGACAAGTGCTCCGGAGCCTGCCTCACTGCGCTC TCCCTTCCTCCCTCCCTTCCTCTGTCCTTCTTCCTCTGTCTCTGCAATGATCCGGCTCTG AGGATGGCTGCTCCACGGGTCTGTCAGGTGCAGTTTTTGGTGGCTTATCTTGAGGAACCT GGGATAGAAG
	INTRON 1 - 2	44,840,881	44,848,279			7,399	GTCTGTTCCTATAAATAAAAGAAAA..........TGTTTGTCCCTTTTCTCACCTGTAG
2	EXON 2	44,848,280	44,848,421	1	2	142	GGCTTCTTGGTAATGCCCAGGCTAAGGCATTAGGACCAGCCTCAGAGCAGTCAGAGAACG AGAAGGATGATGCCTCCCAAGTGTCCTCTACTAGCAACGATGTTAGTTCTTCAGATTTTG AAGAAGGGCCGTCGAGGAAAAG
	INTRON 2 - 3	44,848,422	44,874,282			25,861	GTTAGTACCCAAGCATTAGTGAATA..........TTTTACATTTCTTTTGTTGTTGCAG
3	EXON 3	44,874,283	44,874,452	2	1	170	GCCCAGGCTGCAAGCACAAAGGAAGTTTGCTCAATCTCAGCCGAATAGTCCCAGCACAAC TCCAGTGAAGATAGTGGAGCCTTTGCTACCCCCGCCAGCTACTCAAATTTCTGACCTCTC TAAAAGGAAGCCTAAGACAGAAGACTTTCTTACCTTTCTCTGCCTTCGAG
	INTRON 3 - 4	44,874,453	44,884,703			10,251	GTAAGCTTGGAGGACACATGGCACC..........GAACTACATATGTTAAACCCATCAG
4	EXON 4	44,884,704	44,884,880	1	1	177	GTTCTCCTGCGCTGCCCAACAGTATGGTATATTTTGGAAGCTCTCAGGATGAGGAGGATG TCGAAGAGGAAGATGATGAGACGGAAGATGTCAAAGCAACCACCAACAATGCTTCATCTT CGTGCCAGTCAACCCCCAGGAAAGGAAAAACCCATAAGCATGTACACAACGGGCACG
	INTRON 4 - 5	44,884,881	44,896,253			11,373	GTAGGTTCACCGTGGAGGCTGTGTG..........TTCTTCCCTTCTCTTCCTTTTCTAG
5	EXON 5	44,896,254	44,896,489	1	0	236	TTTTCAATGGCTCCAGTAGGTCAGCACGGGAGAAAGAGCCTGCTCACAAACACAGAAGCA AAGAGGCCACTCCGGGGAAGGAGAAGCACAGCGAGCCCAGGGCAGACAGCCGGAGAGAAC AGGCTTCAGGGGCTCAGCCCACGGCCGCCTCGGCTGCGGCTTCCTCTGCCAAGGGACTTG CTGCCAACCACCAACCTCCCCCTTCGCATCGGTCTGCTCAGGACTTACGGAAACAG
	INTRON 5 - 6	44,896,490	44,902,225			5,736	GTAACCCTCAGTGAGGGCCTTTCTA..........TCCCCTGCTTCTGCTGCCTCCATAG
6	EXON 6	44,902,226	44,903,258	0	1	1,033	GTGTCTAAGGTAAATGGAGTCACTCGAATGTCATCTCTGGGTGCAGGTACAAACAGTGCC AAAAAGATCCGAGAAGTCAGACCTTCACCATCCAAAACTGTGAAGTACACTGCCACAGTG ACCAAGGGGACTGTCACATACACCAAAGCCAAGAGAGAACTGGTCAAGGAAACCAAACCC AACCACCACAAACCCAGTTCAGCTGTCAACCACACAATCTCAGGGAAAACTGAAAGTAGC AATGCAAAAACCCGCAAACAGGTGCTATCCCTTGGGGGGGCGTCCAAGTCCACCGGGCCT GCTGCCAGTGGCCTCAAGGCCAGCAGCAGGTTGAACCCAAAGTCATGCACTAAGGAGGTG GGGGGGCGGCAGCTGAGGGAGGGGCTGCGGAATTCCAAAAGGAGACTGGAAGAGGCACAG CAAGTGGACAAGCCGCAGTCACCCCCCAAGAAGATGAAGGGGGTGGCAGGCAATGCTGAA GCCCCTGGCAAAAAGGCCTCAGCGGCTTCAGGAGAAAAGTCTCTGCTGAATGGACACGTG AAGAAGGAAGTGCCCGAGCGAAGTTTGGAAAGGAATCGGCCAAAGCGGGCCGCGGCTGGC AAGAATATGCTGGGCAAACAAGCACATGGCAAGACAGAGGGCACCCCCTGTGAAAATCGT TCTACCTCGCAACCCGAGTCCTCGCACAAGCCGCATGACCCACAGGGCAAGCCAGAGAAG GGGAGCGGCAAGTCTGGGTGGGCAGCGATGGACGAGATCCCTGTCCTCAGGCCCTCCGCC AAGGAGTTCCACGACCCGCTCATCTACATCGAGTCAGTACGTGCTCAGGTGGAGAAGTAC GGGATGTGTCGCGTGATTCCCCCTCCAGACTGGCGGCCAGAGTGCAAGCTCAACGATGAG ATGCGCTTTGTCACGCAGATCCAGCACATCCATAAGCTGGGCCGGCGCTGGGGCCCCAAC GTGCAGCGGCTAGCCTGCATAAAGAAGCACCTCAGATCTCAGGGCATCACCATGGATGAG CTCCCCCTCATAG
	INTRON 6 - 7	44,903,259	44,906,232			2,974	GTGAGTTAATTCGGGGATTGCCGGG..........ACCATTTCACCCCATTGCTGCCCAG
7	EXON 7	44,906,233	44,906,735	1	0	503	GAGGCTGTGAGCTCGACCTGGCCTGCTTTTTCCGGCTGATTAATGAGATGGGCGGCATGC AGCAAGTGACTGACCTCAAAAAATGGAACAAACTAGCAGACATGCTGCGCATTCCCAAAA CTGCCCAGGACCGGCTGGCCAAGCTGCAGGAGGCCTACTGCCAGTACCTGCTTTCCTATG ACTCCCTGTCCCCCGAGGAGCACCGACGGCTGGAGAAGGAGGTGCTGATGGAGAAGGAGA TCCTGGAAAAGCGCAAAGGGCCATTAGAGGGGCACACGGAGAGCGACCACCACAAGTTCC ACTCCCTGCCCCGCTTTGAGCCCAAGAATGGGCTTGTCCACGGTGTCACACCTAGGAATG GATTCCGTAGCAAGCTCAAGGAGGTGGGCCGGGCCCCACTGAAGACGGGCCGGCGGCGGC TGTTCGCTCAGGAAAAAGAAGTGGTCAAAGAGGAGGAAGAAGACAAAGGTGTCCTCAATG ACTTCCACAAGTGCATCTATAAG
	INTRON 7 - 8	44,906,736	44,907,493			758	GTGAGTGGGCTGTGCAGTAGGGTGT..........TCTTCTTCTGTTTTCTTTGTTTCAG
8	EXON 8	44,907,494	44,907,586	0	0	93	GGAAGATCTGTTTCTCTAACAACTTTTTATCGAACAGCAAGAAACATCATGAACATGTGT TTCAGCAAGGAGCCCGCACCAGCAGAGATCGAG
	INTRON 8 - 9	44,907,587	44,910,342			2,756	GTAAGTAAGTTAGCCATCTCCATAC..........GACTGGTTTTTCCTCTTGTCAACAG
9	EXON 9	44,910,343	44,910,461	0	2	119	CAAGAGTACTGGAGGTTAGTGGAAGAGAAGGACTGTCATGTGGCAGTTCACTGCGGAAAG GTGGACACTAATACCCATGGCAGCGGGTTCCCGGTGGGAAAATCAGAACCCTTTTCAAG
	INTRON 9 - 10	44,910,462	44,910,536			75	GTAATTGTACATTATCTTGTCCGTG..........GACAGCCCCTTCTTTCCCTCTGCAG
10	EXON 10	44,910,537	44,910,607	2	1	71	GCATGGATGGAACCTCACTGTCCTCCCAAATAACACAGGGTCCATCCTGCGTCACCTTGG TGCTGTGCCTG
	INTRON 10 - 11	44,910,608	44,911,165			558	GTAAGTATGACCTGATCTCTTCTGG..........TTAATGACATCTCTTTATGTTGTAG
11	EXON 11	44,911,166	44,911,280	1	2	115	GAGTGACTATTCCCTGGCTAAATATTGGCATGGTCTTTTCTACCTCATGCTGGTCTCGAG ACCAAAATCACCTTCCATATATTGACTACTTACACACTGGTGCTGACTGCATTTG
	INTRON 11 - 12	44,911,281	44,913,180			1,900	GTGAGTACTCACCCCCAGCAGCAGG..........GTCTCTTGTCTTTCCACCACCCCAG
12	EXON 12	44,913,181	44,913,286	2	0	106	GTATTGCATTCCTGCTGAGGAGGAGAACAAGCTGGAGGACGTAGTCCACACTCTGCTGCA GGGCAATGGTACCCCAGGGCTGCAGATGCTGGAGAGCAATGTAATG
	INTRON 12 - 13	44,913,287	44,913,650			364	GTAGGTCTATTATTGTTAGAAAGTG..........CTCTCAGTTGGCACTCTCTCCCCAG
13	EXON 13	44,913,651	44,913,833	0	0	183	ATCTCCCCAGAGGTGCTGTGCAAGAAGGGGATCAAGGTCCACAGGACTGTACAGCAGAGT GGGCAGTTTGTTGTCTGCTTCCCGGGATCCTTTGTGTCCAAAGTATGTTGTGGCTACAAC GTCTCAGAGACAGTGCACTTTGCTACCACCCAGTGGACAAGCATGGGCTTCGAGACTGCC AAG
	INTRON 13 - 14	44,913,834	44,914,245			412	GTAAGCAGAGCAGGCGTCCTTAGGT..........TTTGTAAAGGTGGTTCTTCTTTCAG
14	EXON 14	44,914,246	44,914,319	0	-	74	GAGATGAAGCGCCGCCATATAGCTAAGCCATTCTCCATGGAGAAGTTGCTCTACCAGATT GCACAAGCAGAAGC
	3' upstream sequence						AAAAAAGGAAAATGGTCCCACCCTCAGTACCATCTCAGCCCTTCTGGACGAGCTCAGGTA GTGTAGACCCAGGTCTCAGGACCTCAGGGGAAGCAGGCCCAGGTGGAAGAAGCAGGTGGC AGTTCCCTGAACTGCAGGCCACCTGCAGCTCATTAAGGACTGAAACTTTTTCCTTTGGTC CTCTGCTATTCCTCCATCTTCCTGTCTGATAATGGGAAGCTCTTGGTGAGCTGATAATGA AAAGTGCTCCCAAGCTCTTTGGGGTCAGTGCTGAACTTGCCTTTTGGTAATAATAGTATA GAAAAGGAAGGTTGCTGGGCCTCTCTCTCCATGGCTGACCCTGTAGTCTAGTCTAAAGGG GTGATGACATGTCCTTTTTAGTGGGAGCAGGTATTCATTGTGGGCATTTGACCTTCTGAT GACACCCGCCACTTCCCTGCACAGGGATACAGAGCTGCGGCAGCGCAGGCAGTTGTTCGA GGCTGGCCTTCACTCTTCTGCACGCTATGGCAGCCACGACGGCAACAGCACAGTGGCGGA TGGGAAGAAAAAGCCTCGAAAGTGGCTACAGCTGGAAACTTCAGAAAGGAGGTGCCAGAT CTGCCAGCACTTGTGCTACCTGTCCATGGTGAGTGTATGTGTGAGAGCCCAGTGTGACCC ACCACGGCCTCAACACCAGGCCTACTTCAGGGCTTCCTTCAGACCCCAGCCTCCTCTCAC TATGGTAGCAGGAGTGGGAGTCACTTGGCCACAGTGGGCAGTTCTATCTAGTACTGGTGC ACTCCCCTAAATCCCTTGCTTTTTATACCACTTAGTACCACACCTACATTCTGTTACACC TTCATACTGGGAAACACCCTCATGTTCCCAGCCTGTATCCTCCTCTGTGATTCTAAATTC TATCAGGCTGGCAATAAAGATTAACCTCGGGGTTTTATTAATAGTAATAAATGTGTTTTG CTTATAACCACTGAATTTGTGATTAGTTCTTAGAATCTTT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Jarid2 (ENSMUSG00000038518)
Transcript ID	ENSMUST00000173906

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 1029 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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