MoG+ -Mouse Genome database with high added value-

Tutorials are available here.

BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Jarid2 (ENSMUSG00000038518)

Cross Reference

EMBL	AC166074, AC170597
GO	GO:0000122, GO:0001889, GO:0003677, ...show all
goslim_goa	GO:0002376, GO:0003674, GO:0003677, ...show all
MGI_trans_name	Jarid2-013
OTTP	OTTMUSP00000054206
OTTT	OTTMUST00000096895
UniParc	UPI00021CF769
Uniprot/SPTREMBL	G3UXT1
Vega_transcript	Jarid2-013, OTTMUST00000096895
Vega_translation	214402, OTTMUSP00000054206

Definition

protein_id:ENSMUSP00000133812
translation:

MSKERPKRNIIQKKYDDSDGIPW

Chromosome

13

Length
Position(start - end)

91,530
44,731,872 - 44,823,403

Orient to Chromosome

plus

Link

Location : (13:44731872-44823403)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Jarid2 (ENSMUSG00000038518)
Transcript ID	ENSMUST00000174086

Reports
substitution
cSNPs	0
Insertion	90
Deletion	99
SNPs	-1kb 44726577(c.-5295T>C), 44727028(c.-4844C>T), 44727083(c.-4789G>T), 44727103(c.-4769T>C), 44727120(c.-4752G>A), 44727188(c.-4684T>C), 44727246(c.-4626T>C), 44727269(c.-4603C>T), 44727517(c.-4355T>C), 44727997(c.-3875A>C), 44728416(c.-3456C>G), 44728470(c.-3402T>C), 44728739(c.-3133C>A), 44728796(c.-3076G>A), 44729167(c.-2705G>A), 44729259(c.-2613A>G), 44729316(c.-2556G>A), 44729422(c.-2450T>C), 44730166(c.-1706A>G), 5'UTR 44731772(c.-100A>C), CDS 3'UTR INTRON 44732555(c.45+639C>T), 44732772(c.45+856A>G), 44732948(c.45+1032A>T), 44733099(c.45+1183A>C), 44733533(c.45+1617C>T), 44733540(c.45+1624T>C), 44733749(c.45+1833T>G), 44733989(c.45+2073A>T), 44734014(c.45+2098T>C), 44734024(c.45+2108C>A), 44734265(c.45+2349T>C), 44734357(c.45+2441G>A), 44734373(c.45+2457T>C), 44734680(c.45+2764G>A), 44734736(c.45+2820A>G), 44734770(c.45+2854C>T), 44735313(c.45+3397C>T), 44735647(c.45+3731T>C), 44735768(c.45+3852A>C), 44735910(c.45+3994T>A), 44736395(c.45+4479A>G), 44736696(c.45+4780T>G), 44737451(c.45+5535T>C), 44737780(c.45+5864C>T), 44737997(c.45+6081C>A), 44738057(c.45+6141A>T), 44738693(c.45+6777C>T), 44738698(c.45+6782G>A), 44738706(c.45+6790G>A), 44738714(c.45+6798G>A), 44739063(c.45+7147C>G), 44739095(c.45+7179A>G), 44739266(c.45+7350G>A), 44741657(c.45+9741G>A), 44741658(c.45+9742C>T), 44741830(c.45+9914C>T), 44741896(c.45+9980A>G), 44741960(c.45+10044A>G), 44742009(c.45+10093G>A), 44742145(c.45+10229T>A), 44742150(c.45+10234A>T), 44742355(c.45+10439A>G), 44742360(c.45+10444C>T), 44742376(c.45+10460G>A), 44742503(c.45+10587G>A), 44742577(c.45+10661T>G), 44742643(c.45+10727C>T), 44742663(c.45+10747G>T), 44742664(c.45+10748T>C), 44742737(c.45+10821A>C), 44742884(c.45+10968C>G), 44743238(c.45+11322T>C), 44743309(c.45+11393A>T), 44743599(c.45+11683T>C), 44743720(c.45+11804T>C), 44743914(c.45+11998G>A), 44744243(c.45+12327T>A), 44744818(c.45+12902G>A), 44744948(c.45+13032C>T), 44744998(c.45+13082T>G), 44745666(c.45+13750A>G), 44745771(c.45+13855T>C), 44745879(c.45+13963T>A), 44745953(c.45+14037T>C), 44746032(c.45+14116T>C), 44746047(c.45+14131G>C), 44746624(c.45+14708C>T), 44746669(c.45+14753T>G), 44746784(c.45+14868T>G), 44746969(c.45+15053A>C), 44747229(c.45+15313A>G), 44747339(c.45+15423G>A), 44747379(c.45+15463C>G), 44748137(c.45+16221G>C), 44748283(c.45+16367T>G), 44748400(c.45+16484G>C), 44748561(c.45+16645C>T), 44748828(c.45+16912C>T), 44748923(c.45+17007A>G), 44749021(c.45+17105C>T), 44749069(c.45+17153T>A), 44749215(c.45+17299C>T), 44749257(c.45+17341A>G), 44749294(c.45+17378G>T), 44749330(c.45+17414C>T), 44749332(c.45+17416T>A), 44749340(c.45+17424C>T), 44749829(c.45+17913G>A), 44750300(c.45+18384A>G), 44750343(c.45+18427T>A), 44750344(c.45+18428C>G), 44750655(c.45+18739G>C), 44750758(c.45+18842G>A), 44750773(c.45+18857C>T), 44751370(c.45+19454T>C), 44752230(c.45+20314T>C), 44752286(c.45+20370T>C), 44752337(c.45+20421A>T), 44752707(c.45+20791T>G), 44752829(c.45+20913G>T), 44753076(c.45+21160C>A), 44753175(c.45+21259C>G), 44753204(c.45+21288A>C), 44753206(c.45+21290A>C), 44753323(c.45+21407G>T), 44753691(c.45+21775A>G), 44753732(c.45+21816T>C), 44753737(c.45+21821T>A), 44753879(c.45+21963A>T), 44754275(c.45+22359A>G), 44754402(c.45+22486A>G), 44754451(c.45+22535G>A), 44754783(c.45+22867G>A), 44754861(c.45+22945T>C), 44754987(c.45+23071C>T), 44755020(c.45+23104A>G), 44755053(c.45+23137G>A), 44755120(c.45+23204C>T), 44755413(c.45+23497T>C), 44755474(c.45+23558A>G), 44755583(c.45+23667T>G), 44755663(c.45+23747T>A), 44756056(c.45+24140A>T), 44756275(c.45+24359T>C), 44756331(c.45+24415C>T), 44756487(c.45+24571G>T), 44756637(c.45+24721C>A), 44756734(c.45+24818G>C), 44757092(c.45+25176A>T), 44757167(c.45+25251A>C), 44757225(c.45+25309C>A), 44757276(c.45+25360A>T), 44757578(c.45+25662T>C), 44757639(c.45+25723T>C), 44758146(c.45+26230C>T), 44758203(c.45+26287T>C), 44758310(c.45+26394T>C), 44758370(c.45+26454G>A), 44758522(c.45+26606A>T), 44758547(c.45+26631T>C), 44758658(c.45+26742C>T), 44758766(c.45+26850T>C), 44758878(c.45+26962T>C), 44759117(c.45+27201A>C), 44759220(c.45+27304C>T), 44759721(c.45+27805G>A), 44759748(c.45+27832T>C), 44759776(c.45+27860A>G), 44759795(c.45+27879G>A), 44759848(c.45+27932T>C), 44759919(c.45+28003T>G), 44760059(c.45+28143A>G), 44760341(c.45+28425G>A), 44760483(c.45+28567C>T), 44760554(c.45+28638G>T), 44760579(c.45+28663G>C), 44760644(c.45+28728G>T), 44760661(c.45+28745G>A), 44760914(c.45+28998A>T), 44760942(c.45+29026A>G), 44760949(c.45+29033T>G), 44760996(c.45+29080G>C), 44760997(c.45+29081A>T), 44761015(c.45+29099G>A), 44761258(c.45+29342A>G), 44761394(c.45+29478C>T), 44761573(c.45+29657G>A), 44761603(c.45+29687A>G), 44761632(c.45+29716T>A), 44762003(c.45+30087T>C), 44762107(c.45+30191A>G), 44762129(c.45+30213C>A), 44762165(c.45+30249T>A), 44762547(c.45+30631C>T), 44762551(c.45+30635A>G), 44762830(c.45+30914G>A), 44763165(c.45+31249C>T), 44763203(c.45+31287C>T), 44763519(c.45+31603T>C), 44763528(c.45+31612G>A), 44763697(c.45+31781A>G), 44763774(c.45+31858T>C), 44763973(c.45+32057G>A), 44764023(c.45+32107G>A), 44764206(c.45+32290C>T), 44764479(c.45+32563C>T), 44764484(c.45+32568C>T), 44764511(c.45+32595T>G), 44764544(c.45+32628G>A), 44764870(c.45+32954C>A), 44764975(c.45+33059G>A), 44765213(c.45+33297C>A), 44765526(c.45+33610G>T), 44765566(c.45+33650G>A), 44766004(c.45+34088T>A), 44766023(c.45+34107G>A), 44767212(c.45+35296T>G), 44767251(c.45+35335C>T), 44767527(c.45+35611A>G), 44767551(c.45+35635T>A), 44767552(c.45+35636C>A), 44767553(c.45+35637C>T), 44767584(c.45+35668C>T), 44767688(c.45+35772T>C), 44767842(c.45+35926A>C), 44767873(c.45+35957T>C), 44767902(c.45+35986G>A), 44767944(c.45+36028C>T), 44768260(c.45+36344T>A), 44768367(c.45+36451G>A), 44768461(c.45+36545C>T), 44768623(c.45+36707T>C), 44768734(c.45+36818G>A), 44768739(c.45+36823A>G), 44768750(c.45+36834A>G), 44768862(c.45+36946A>T), 44768991(c.45+37075A>G), 44769185(c.45+37269C>G), 44769188(c.45+37272G>C), 44769288(c.45+37372G>C), 44769368(c.45+37452T>G), 44769883(c.45+37967A>G), 44769962(c.45+38046C>A), 44770236(c.45+38320G>A), 44770738(c.45+38822T>A), 44770807(c.45+38891A>G), 44770964(c.45+39048T>C), 44771060(c.45+39144T>C), 44771111(c.45+39195A>G), 44771309(c.45+39393A>G), 44771412(c.45+39496G>A), 44771778(c.45+39862A>G), 44771890(c.45+39974A>G), 44772163(c.45+40247C>T), 44772526(c.45+40610C>T), 44772643(c.45+40727C>T), 44772753(c.45+40837C>T), 44772767(c.45+40851A>G), 44772847(c.45+40931G>A), 44772946(c.45+41030G>A), 44772989(c.45+41073A>G), 44773544(c.45+41628T>A), 44773883(c.45+41967C>A), 44773902(c.45+41986C>T), 44773907(c.45+41991G>T), 44774018(c.45+42102T>C), 44774184(c.45+42268G>A), 44774219(c.45+42303C>G), 44774403(c.45+42487C>T), 44774609(c.45+42693T>C), 44774658(c.45+42742C>G), 44774723(c.45+42807T>C), 44775034(c.45+43118G>T), 44775072(c.45+43156C>T), 44775786(c.45+43870A>G), 44775854(c.45+43938G>A), 44775901(c.45+43985G>A), 44775955(c.45+44039A>G), 44776016(c.45+44100A>G), 44776323(c.45+44407G>T), 44776346(c.45+44430C>T), 44776538(c.45+44622A>G), 44776586(c.45+44670A>G), 44776857(c.45+44941C>T), 44777112(c.45+45196A>C), 44777124(c.45+45208A>G), 44777346(c.45+45430C>T), 44777374(c.45+45458A>G), 44777528(c.45+45612C>T), 44777533(c.45+45617C>T), 44777572(c.45+45656G>A), 44777765(c.46-45615C>T), 44778114(c.46-45266A>G), 44778115(c.46-45265G>T), 44778123(c.46-45257C>T), 44778373(c.46-45007T>C), 44778535(c.46-44845G>A), 44778546(c.46-44834G>T), 44778802(c.46-44578C>T), 44778954(c.46-44426C>T), 44779002(c.46-44378C>G), 44779211(c.46-44169C>T), 44779367(c.46-44013A>C), 44779475(c.46-43905T>C), 44780671(c.46-42709T>G), 44781099(c.46-42281C>T), 44781101(c.46-42279A>C), 44781662(c.46-41718C>T), 44781885(c.46-41495T>C), 44782067(c.46-41313C>A), 44782103(c.46-41277T>A), 44782144(c.46-41236T>C), 44783898(c.46-39482T>C), 44784256(c.46-39124T>C), 44784293(c.46-39087G>A), 44784312(c.46-39068G>A), 44784325(c.46-39055A>C), 44784352(c.46-39028G>A), 44784383(c.46-38997C>T), 44785233(c.46-38147A>G), 44785234(c.46-38146A>C), 44785238(c.46-38142G>C), 44785415(c.46-37965T>A), 44785416(c.46-37964C>T), 44785544(c.46-37836T>C), 44785552(c.46-37828C>T), 44785558(c.46-37822C>T), 44785609(c.46-37771C>T), 44785783(c.46-37597A>G), 44785816(c.46-37564C>T), 44785895(c.46-37485T>A), 44786233(c.46-37147C>T), 44786318(c.46-37062T>C), 44786661(c.46-36719T>G), 44786805(c.46-36575C>G), 44786837(c.46-36543T>A), 44786951(c.46-36429A>G), 44787004(c.46-36376G>C), 44787136(c.46-36244G>C), 44787213(c.46-36167C>G), 44787288(c.46-36092A>G), 44787541(c.46-35839C>T), 44788148(c.46-35232C>T), 44788357(c.46-35023A>G), 44788675(c.46-34705A>G), 44788922(c.46-34458C>T), 44788937(c.46-34443T>C), 44788973(c.46-34407C>T), 44789010(c.46-34370C>T), 44789141(c.46-34239G>C), 44789214(c.46-34166C>A), 44789248(c.46-34132G>A), 44789293(c.46-34087A>G), 44789586(c.46-33794T>C), 44789725(c.46-33655G>C), 44789928(c.46-33452C>G), 44790203(c.46-33177A>G), 44790355(c.46-33025A>C), 44790415(c.46-32965C>T), 44790458(c.46-32922T>C), 44790478(c.46-32902G>A), 44790786(c.46-32594T>C), 44791017(c.46-32363A>C), 44791539(c.46-31841G>A), 44791553(c.46-31827G>A), 44791818(c.46-31562G>A), 44791833(c.46-31547T>C), 44791881(c.46-31499A>G), 44791930(c.46-31450G>A), 44791965(c.46-31415A>G), 44792015(c.46-31365A>G), 44792135(c.46-31245T>C), 44792271(c.46-31109C>T), 44792742(c.46-30638T>C), 44792893(c.46-30487T>C), 44792905(c.46-30475T>A), 44793083(c.46-30297T>G), 44793318(c.46-30062A>T), 44793359(c.46-30021T>A), 44793735(c.46-29645C>A), 44793843(c.46-29537G>A), 44794042(c.46-29338T>A), 44794189(c.46-29191G>C), 44794379(c.46-29001G>A), 44794697(c.46-28683A>T), 44794699(c.46-28681T>G), 44794884(c.46-28496G>A), 44795056(c.46-28324A>G), 44795201(c.46-28179C>T), 44795307(c.46-28073G>A), 44795499(c.46-27881C>A), 44796130(c.46-27250G>T), 44796190(c.46-27190T>C), 44796191(c.46-27189C>G), 44796196(c.46-27184C>T), 44796321(c.46-27059G>T), 44796339(c.46-27041A>G), 44796714(c.46-26666C>T), 44796777(c.46-26603T>C), 44796808(c.46-26572C>T), 44797573(c.46-25807A>G), 44797588(c.46-25792T>C), 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44805173(c.46-18207G>T), 44805185(c.46-18195T>C), 44805210(c.46-18170T>G), 44805424(c.46-17956G>A), 44805575(c.46-17805C>A), 44805583(c.46-17797G>T), 44805669(c.46-17711T>C), 44805682(c.46-17698C>G), 44805782(c.46-17598C>T), 44805868(c.46-17512C>G), 44805908(c.46-17472G>A), 44806169(c.46-17211G>T), 44806278(c.46-17102G>A), 44806473(c.46-16907G>T), 44807008(c.46-16372T>C), 44807448(c.46-15932C>G), 44807560(c.46-15820A>G), 44807895(c.46-15485C>T), 44808017(c.46-15363T>C), 44808158(c.46-15222G>T), 44808241(c.46-15139A>G), 44808243(c.46-15137T>C), 44809158(c.46-14222C>T), 44809584(c.46-13796C>T), 44810435(c.46-12945A>G), 44810704(c.46-12676G>C), 44811252(c.46-12128C>G), 44811380(c.46-12000T>G), 44811469(c.46-11911T>A), 44811584(c.46-11796A>G), 44811617(c.46-11763A>G), 44811625(c.46-11755T>C), 44811629(c.46-11751T>C), 44811636(c.46-11744A>G), 44811672(c.46-11708T>C), 44811711(c.46-11669T>C), 44811830(c.46-11550A>G), 44811842(c.46-11538A>G), 44812061(c.46-11319C>A), 44812542(c.46-10838T>C), 44812544(c.46-10836T>A), 44812563(c.46-10817A>C), 44812606(c.46-10774C>T), 44812863(c.46-10517T>C), 44812984(c.46-10396T>C), 44812985(c.46-10395G>A), 44813253(c.46-10127A>G), 44813795(c.46-9585C>T), 44813947(c.46-9433G>A), 44814171(c.46-9209A>G), 44814548(c.46-8832G>A), 44814837(c.46-8543A>G), 44815043(c.46-8337G>A), 44815183(c.46-8197A>T), 44815442(c.46-7938T>C), 44815530(c.46-7850A>T), 44817668(c.46-5712T>C), 44818027(c.46-5353T>C), 44818028(c.46-5352A>T), 44818029(c.46-5351G>A), 44818059(c.46-5321T>G), 44818175(c.46-5205A>G), 44818242(c.46-5138C>T), 44818448(c.46-4932G>C), 44818507(c.46-4873G>A), 44818522(c.46-4858A>T), 44818547(c.46-4833C>T), 44818553(c.46-4827G>A), 44818579(c.46-4801A>T), 44818702(c.46-4678C>G), 44818829(c.46-4551G>A), 44819306(c.46-4074G>A), 44819661(c.46-3719G>A), 44819937(c.46-3443T>C), 44820155(c.46-3225T>C), 44820172(c.46-3208G>A), 44820174(c.46-3206T>C), 44820659(c.46-2721T>G), 44820846(c.46-2534A>G), 44821203(c.46-2177C>A), 44821300(c.46-2080T>C), 44821431(c.46-1949T>C), 44821475(c.46-1905G>A), 44821535(c.46-1845C>T), 44821645(c.46-1735G>A), 44821661(c.46-1719G>A), 44821900(c.46-1480T>C), 44822208(c.46-1172A>T), 44822734(c.46-646A>C), 44823179(c.46-201T>C), +1kb 44823653(c.250A>G), 44823742(c.339T>G), 44823743(c.340C>T), 44823875(c.472C>G), 44823959(c.556C>A), 44824118(c.715T>C), 44824169(c.766T>G), 44824186(c.783T>C), 44824530(c.1127T>C), 44824543(c.1140T>C), 44824640(c.1237T>C), 44825335(c.1932C>T), 44825912(c.2509C>A), 44825914(c.2511T>C), 44825968(c.2565C>T), 44826374(c.2971T>G), 44826459(c.3056C>A), 44827058(c.3655C>A), 44827457(c.4054A>G), 44827504(c.4101G>T), 44827592(c.4189C>G), 44827640(c.4237G>A), 44827690(c.4287G>A), 44827809(c.4406G>C), 44827960(c.4557C>T), 44827995(c.4592C>T), 44828163(c.4760G>T), 44828171(c.4768G>T), 44828226(c.4823C>G), 44828304(c.4901G>T), 44828391(c.*4988T>A),
Insertions	-1kb 44728509 (c.-3363_-3362insA), 44730353 (c.-1519_-1518insCCA), 5'UTR CDS 3'UTR INTRON 44732824 (c.45+913_45+914dupTT), 44733371 (c.45+1455_45+1456insCTTGT), 44738214 (c.45+6301dupA), 44738777 (c.45+6865_45+6866insGGTAGGTATGTA), 44740197 (c.45+8281_45+8282insCCTAG), 44740324 (c.45+8408_45+8409insGCCC), 44740585 (c.45+8670_45+8671insTCAA), 44741450 (c.45+9537_45+9540dupATAT), 44742004 (c.45+10089dupG), 44742654 (c.45+10739_45+10740insAT), 44744162 (c.45+12255_45+12256dupTT), 44744703 (c.45+12789dupA), 44745124 (c.45+13210dupG), 44745408 (c.45+13493_45+13496dupTTTT), 44748112 (c.45+16200_45+16203dupACCG), 44750373 (c.45+18464dupT), 44750776 (c.45+18859_45+18860dupTG), 44750829 (c.45+18916dupA), 44750834 (c.45+18918dupA), 44751631 (c.45+19716_45+19717insTTCT), 44754522 (c.45+22617_45+22619dupAAA), 44755491 (c.45+23578dupG), 44758155 (c.45+26246dupC), 44758609 (c.45+26703dupT), 44759379 (c.45+27464dupC), 44760992 (c.45+29077dupC), 44763477 (c.45+31562dupT), 44763479 (c.45+31563_45+31564insT), 44765220 (c.45+33304_45+33305insG), 44765227 (c.45+33312dupG), 44765404 (c.45+33488_45+33489insTG), 44765865 (c.45+33951_45+33952insAAG), 44767178 (c.45+35263_45+35265dupAAA), 44768426 (c.45+36514_45+36515dupGT), 44768713 (c.45+36797_45+36798insCA), 44768772 (c.45+36858_45+36859insTCTGA), 44769716 (c.45+37810_45+37813dupAAAA), 44770660 (c.45+38745_45+38746insGA), 44771416 (c.45+39500_45+39501insTA), 44773563 (c.45+41647_45+41648insTC), 44774269 (c.45+42368_45+42369dupTT), 44775513 (c.45+43599_45+43601dupTCT), 44776464 (c.45+44558_45+44560dupTTT), 44778163 (c.46-45216_46-45215dupCT), 44778512 (c.46-44861_46-44859dupAAA), 44779759 (c.46-43621dupT), 44779761 (c.46-43619_46-43618insT), 44785429 (c.46-37951_46-37950insGT), 44785509 (c.46-37863dupA), 44785518 (c.46-37862_46-37861insA), 44786690 (c.46-36690_46-36689insTTTA), 44788470 (c.46-34909_46-34908insGT), 44789767 (c.46-33612_46-33611insAC), 44790613 (c.46-32750_46-32747dupGTTT), 44791213 (c.46-32167_46-32166insA), 44792491 (c.46-30880dupT), 44792498 (c.46-30880dupT), 44793643 (c.46-29740_46-29737dupGGCA), 44795285 (c.46-28094dupT), 44796292 (c.46-27082dupT), 44798735 (c.46-24645_46-24644insTTTT), 44798890 (c.46-24487_46-24486insGGGTTTG), 44800577 (c.46-22802_46-22801insCT), 44801749 (c.46-21631_46-21630insT), 44802356 (c.46-21024_46-21023insGGC), 44804253 (c.46-19122_46-19119dupTTTT), 44804477 (c.46-18895_46-18894dupAA), 44805603 (c.46-17775dupT), 44806867 (c.46-16511_46-16510insCCTCT), 44808003 (c.46-15376_46-15375insCT), 44808885 (c.46-14492_46-14491insCCCGTC), 44809506 (c.46-13874_46-13873insG), 44809719 (c.46-13658_46-13657insATATTA), 44810405 (c.46-12968dupT), 44810643 (c.46-12737dupT), 44810746 (c.46-12633_46-12631dupTGT), 44810750 (c.46-12629_46-12628insGTT), 44811697 (c.46-11686_46-11683dupCCGT), 44814000 (c.46-9372_46-9371dupAA), 44815019 (c.46-8359_46-8354dupTTTGAT), 44821692 (c.46-1685dupC), 44823097 (c.46-282dupT), +1kb 44823743 (c.340_341insATGT), 44825443 (c.2040_2041insT), 44825948 (c.2545_2546insA), 44826227 (c.2820_2824dupTTTTT), 44826720 (c.3317_3318insT), 44828085 (c.4682_4683insA),
Deletions	-1kb 44726946 (c.-4925_-4920delAAAACA), 44728269 (c.-3602delA), 44728349 (c.-3522_-3516delTTTTTTT), 44729580 (c.-2291delC), 44730951 (c.-920_-916delGGGGG), 5'UTR CDS 3'UTR INTRON 44733115 (c.45+1201delC), 44734845 (c.45+2932_45+2936delGCCTT), 44736802 (c.45+4887_45+4895delCCCCCAAAA), 44736962 (c.45+5050_45+5057delCTGGCCCA), 44737692 (c.45+5784_45+5787delGATA), 44738728 (c.45+6813_45+6820delCGTGTATG), 44739223 (c.45+7310delC), 44742173 (c.45+10258delT), 44742227 (c.45+10312_45+10313delCC), 44743643 (c.45+11739_45+11740delAG), 44744575 (c.45+12660_45+12661delCC), 44744826 (c.45+12911_45+12914delTTTT), 44745376 (c.45+13461_45+13464delTATG), 44745621 (c.45+13713delT), 44747708 (c.45+15793_45+15794delAT), 44747999 (c.45+16084delC), 44748019 (c.45+16104_45+16108delAAGAA), 44749047 (c.45+17152_45+17153delTT), 44750213 (c.45+18303_45+18305delAAG), 44751107 (c.45+19192_45+19193delAA), 44751158 (c.45+19248_45+19251delAGTT), 44751163 (c.45+19248_45+19251delAGTT), 44753207 (c.45+21293_45+21295delTGA), 44753221 (c.45+21306_45+21309delTTTA), 44757286 (c.45+25371_45+25374delAATA), 44758802 (c.45+26887delT), 44758812 (c.45+26897delT), 44758866 (c.45+26956_45+26959delGAGA), 44758871 (c.45+26956_45+26959delGAGA), 44759564 (c.45+27651_45+27654delTTGT), 44759581 (c.45+27667_45+27668delTG), 44759673 (c.45+27758_45+27765delTAGATAGA), 44760144 (c.45+28230delT), 44761536 (c.45+29621delT), 44761564 (c.45+29649_45+29650delTT), 44761696 (c.45+29781delA), 44762852 (c.45+30967_45+30974delAGTGTGTG), 44763411 (c.45+31496_45+31497delCT), 44763592 (c.45+31677delC), 44763833 (c.45+31933_45+31934delTT), 44764222 (c.45+32307delG), 44764288 (c.45+32373_45+32376delGTTT), 44764313 (c.45+32398delT), 44764409 (c.45+32498_45+32500delCTT), 44764413 (c.45+32498_45+32500delCTT), 44765162 (c.45+33247_45+33248delAC), 44765166 (c.45+33251_45+33254delCACA), 44765208 (c.45+33293_45+33294delAG), 44765213 (c.45+33298_45+33303delTTTTCT), 44768713 (c.45+36798_45+36799delAG), 44768769 (c.45+36854delA), 44769330 (c.45+37415_45+37416delTT), 44769348 (c.45+37433delT), 44770901 (c.45+38986_45+38987delAT), 44770969 (c.45+39063delG), 44772302 (c.45+40387_45+40389delTTA), 44773395 (c.45+41483_45+41486delGTTT), 44779261 (c.46-44108delT), 44779655 (c.46-43724_46-43723delTT), 44779905 (c.46-43472_46-43467delAGTTGT), 44780565 (c.46-42813delA), 44782547 (c.46-40820_46-40818delCCT), 44783952 (c.46-39427delT), 44784592 (c.46-38787delG), 44784916 (c.46-38463_46-38457delCATTCTT), 44785889 (c.46-37490_46-37489delTG), 44788689 (c.46-34676_46-34674delAAA), 44792415 (c.46-30964_46-30963delTT), 44793501 (c.46-29877delT), 44794699 (c.46-28679_46-28673delCTAAAAA), 44800917 (c.46-22462_46-22461delGT), 44802903 (c.46-20465_46-20461delTTTTT), 44804927 (c.46-18452_46-18447delAGAGTT), 44805996 (c.46-17379_46-17378delTA), 44807545 (c.46-15830_46-15828delTAT), 44807665 (c.46-15714_46-15710delAAGTA), 44810050 (c.46-13324_46-13323delAT), 44811602 (c.46-11775delA), 44811932 (c.46-11447_46-11446delAA), 44811985 (c.46-11394_46-11393delTT), 44812578 (c.46-10795_46-10794delAG), 44813089 (c.46-10288delA), 44814740 (c.46-8639_46-8638delTC), 44815375 (c.46-8004_46-8000delTAGTT), 44817930 (c.46-5429_46-5427delCCT), 44819953 (c.46-3426_46-3422delTTTGG), 44820468 (c.46-2905_46-2899delGTTTTTG), 44821958 (c.46-1421_46-1419delTTA), 44822202 (c.46-1176_46-1172delGTAAA), +1kb 44826266 (c.2864_2866delCAC), 44826481 (c.3079_3086delAGGGCTTG), 44827839 (c.4437delG), 44827918 (c.4516_4519delCTAT), 44827923 (c.4521_*4524delTATC),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000174086)	MSKERPKRNIIQKKYDDSDGIPW
MSMv4 transcript	MSKERPKRNIIQKKYDDSDGIPW
homology	100.00 (23 / 23)

Exon Detail Report

Gene Symbol (Gene ID)	Jarid2 (ENSMUSG00000038518)
Transcript ID	ENSMUST00000174086

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........CGTGGCCCAGTTTGGCTGAGGACCCGCTCCAACCCCTCGCTGACACCGCC CCCCGCCGCCGCCGCCGCCACGCTCCGAGGCCTTTCCCCCGGGAAGCCTGGCGGCTTGCC CTCGCGGGCCCGCGGGCGCGCTCTCGCGCGCCGATTCCTCGATTCCACAGGCGGTTCGCG CCCGGGGTGGGGGCGGGGCGGGGCGCGCGGGGCCGGGCCGAGCCGGGCCGGGCCGGGAGG GCGGCCCCCGCGGGGAGGGGACTGGGGGGCGGGGCCGGCGTGGGGAGTTCCTCGCTCCCG GACCACACGCTCCGCGGGCCAATCCCGAGCCAGCCTCTAGCAGTGTCGCACGCGGGACAC GTCCAAGCGTTTGTTGGCAGGGCCCGGGGAAGGGGGAGGGGGAAGCGATCGGGGAAAAGG GAGTTGAGTGACAGGAGGCGTGGGGCACGCTGGGAATTGTAGTTCTTCGCTTCCGTGGCC ATAGCCATTTTGTAGTCAAGGGACTACAACTTCCAGAAGATCAAGGGGACTATTCTAAGG TGCCCCGGGAATAGGCGGCTCTCCCCCGGGCCGGGCGTCCTGGGGCACTGGTACCCAGCT GCCCGGCTGCAGGTAGACGTGAGGGCAGTGGCGAAGGTTTGCATGCGGCGACTGTTGGGT GAGCGGACTGCGGGTGGGGGGGGGGGGGGGGAAGGGGCTGAGGTGGAGCGACCGAGCGTG CCATGCATTGAGCTAGGGAGCCTCTCTCAATTCCACGACTGGGCTCGGCGTGGGAGAGGC GCCTGACGGGCGGCCCGCAGAGGCTTCGTGGAGGCCTTTCCGGGGTCTCGTCGACGGGGC TGCGGGAGTTCTCCGCACCGGGCCGGGGCTTGTGGGCAGAGGTTAGGCAGGCGTGCGGGG GGCTCAGCTGTGGGAGTTTTCGGCTGGCGGGAGGTGGCGAATTAGCCGAGGAGCCCTAAC TTGTATAAAAGCAGAGTCCATTTAAAGTTGGGCTGGCTAGCCTCTCTCTC
1	EXON 1	44,731,287	44,731,402	-	-	116	ATTGGTTAAGGGGCTTGGAAAAAAGAGACTCGGCGAGCCCTCCGCTGTGGTGCTGCCGCC GCCACCGCCGCCGCTGGAGTTGACTCTTCTGCTCGCACTGCTGCTGCAGCACAAAC
	INTRON 1 - 2	44,731,403	44,731,712			310	GTGACTTCCAACATTTTAAATTTAT..........TTCTCAATTTCGGATTTATTTCAAG
2	EXON 2	44,731,713	44,731,916	-	0	204	GCGAATCTGGTTTTGGGGGAAGAGGAAGAAAAGTCGGATTACAAGATCAACCACCACCAC CAACAATAAAAACCACCAGGATATTTTTTTGCAAATTTCTGACGGCTTTAAATTCATGAA GCAATTGTCCCCTTTTGCAATCAGCATTTGGATCTCAGAATGAGCAAGGAAAGACCCAAG AGGAATATCATTCAGAAGAAATAC
	INTRON 2 - 3	44,731,917	44,823,379			91,463	GTAAGTGCTCTTAACAACACATCCT..........ATTTTCAGTAATTCTCCTTCCACAG
3	EXON 3	44,823,380	44,823,403	0	-	24	GATGACAGCGATGGGATCCCGTGG
	3' upstream sequence						TCAGAAGAGAGAGTTGTACGAAAAGTCCTGTATTTGTCCCTAAAGGAATTCAAGAATGCA CAGAAAAGGCAGCATGGGGAAGGCCTTGCCGGGAGCCTGAAGGCGGTAAATGGTGAGTTG AAAGTGGAACTGGATGGAGTCTTTCTGTGCCTTGTTCTGACCTGGGCACAAGCAAGCTTA CTAAGCTAAGAGTTTTGGCTGTATGAATATATATTTCAGACATCCTATTGTATTTATAGA TATATTTTTGTGTTTCTTTACAAAATAATATTTGGGAAGGTGTGTCAGTCTGTTAGAGGT TATAAACTCAATGTGACATCTATTTACTTATTTATCATTCATGTATGTATGTATGTATGT ATGTATGTATGTATGTATGTAATCAATCTACCCAGTGAGTGCATAGGAACCTTTAATGAT CTTGTTGGAATATGGAGACTTGCACCCTACATGAGGAAATATTCTAAAAACGTACTGCCC TTTGTGCTATGTGCTACCAACCTGTGAGCACCCTGCTGGCTTCCTTGTTGACCAGTAGCT ACAAGGCCTGGGTGCATAACAGAATGCTCAGTCTCTTCCTGTGATTGTCAAACAGATCTG GAAAAGTGGAGGGAACTGACCCTCACATTTCTTACTTTCTCTGCCTCTCATTCAGTAGCA TTTTAAAAGATGAATGCTAAAGTAATCAGAAAACATTTGGTTGTTATCTGGTTCCAGGTG TGATATATTTCATAGTCTATTGTATGTTCCTTTATTGCGTATAGAGTAGTGAATGAACCG TGCTCATGTTCCACTTTATACTTGGCTAACAACAAACAAGAAAACCACAGGAAGAGACCT TGTTGTTGTTGTTGTTGTCCTATAGGTTTGGCTTTGGAAATAGTGGAATCAGCACTTAGA GTGTACTAACTAGCTGCCATGTTATAGCTCACATATGCCTTCCAATATTTCCCCTCTGCC TCCCTACAACCTCCAGTTTCTCATGTGTGTATATGATGAT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Jarid2 (ENSMUSG00000038518)
Transcript ID	ENSMUST00000174086

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 23 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information