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Target CDS Information

Gene Symbol (Gene ID) Uggt1 (ENSMUSG00000037470)
Cross Reference
GO GO:0003980, GO:0005783, GO:0006486, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Uggt1-008
OTTP OTTMUSP00000054604
OTTT OTTMUST00000097361
UniParc UPI00021CF75C
Uniprot/SPTREMBL G3UY35
Vega_transcript OTTMUST00000097361, Uggt1-008
Vega_translation 178944, OTTMUSP00000054604
Definition codon_start:2
protein_id:ENSMUSP00000133929
translation:
XDPIDEVQGFLFGKLRELYPALEGQLKEFRKHLVESTNEMAPLKVWQLQVFQGNYRITAW
RLSALHQWTSYRFRHPGYIQSI

Chromosome 1
Length
Position(start - end)
14,037
36,195,992 - 36,210,030
Orient to Chromosome minus
Link Location : (1:36195992-36210030)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Uggt1 (ENSMUSG00000037470)
Transcript ID ENSMUST00000174142
Reports
substitution
cSNPs2
Insertion32
Deletion36
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num1
synonymous substitutions 36208030 (p.Pro19Pro),
non-synonymous substitutions 36195997 (p.Ile81Val),
B6 transcript
(ENSMUST00000174142)
DPIDEVQGFLFGKLRELYPALEGQLKEFRKHLVESTNEMAPLKVWQLQVFQGNYRITAWR
LSALHQWTSYRFRHPGYIQSI*
MSMv4 transcript
DPIDEVQGFLFGKLRELYPALEGQLKEFRKHLVESTNEMAPLKVWQLQVFQGNYRITAWR
LSALHQWTSYRFRHPGYIQSV*
homology98.78 (82 / 82)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Uggt1 (ENSMUSG00000037470)
Transcript ID ENSMUST00000174142
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........CAACTGTTGTTGATGTCGTGTGTGTCACAGACAGGCCTTACTGTGACTCC
GGTACAAAACTCTAAATATCCTAGGTCTCATGGGTCATTTTTGTTTTTATTATTTTTGTA
CTTGGAACAGTTTTCTTTGGGTTCTTCCTCCCATAATATGATGTGGTTTTTTGTTTTTGT
TTTGTTGAGACAGATTTTTTTTTTCCATGTAGCCCTGGCTGTCCTGGAGCTCACTCTGTA
GACCAGGCTGGCCTTAACTCACTGAGATCCTCCTGCCTCTGCTTCCCAAGTACTGAGACT
AAAGGGATGAGCTGCCATACCCAGCCCTGAAGTAATTTTTTTTAACCACAAGTTTTACTT
GCTGTCTTTTTTTTTCTTTAAAAATCACTTTATTATATCTTTTTGTACTGTGTGGTACTG
AGTTCAGAGCCTTGTGTGTGATGATGCTCGTCCTCCGTTATCTCACCATTGAGCTGCATC
TGCATTCTTTTTAATGTTTTCGTTTGTTTGTTTGCTTTTCATTAAGTTATCCAGGCACAC
TAAACTATCTAGGCCAGTCTTGAATGTGAGCCTCCTGTCTCAGCGGGAATTATGGTGCAT
GCCATTACATTCTCTGCACTGCTTTTAAACATGAAATGATGGATTTGAATAGTGAAGCAA
ATGGAAAATGGTGTGCTGCTCTCTCAGTGATGGTTAGGATTTTTTAAACTGTAAATTCTT
TAGAATTTAACTGTGAAAAAATATTTCATAATATTTCAATCTATTAATTTCAAATTTTTT
AATGTAAAATTTTCTAAGGCTTGAAAGAAAATTTATTCTTGTTCAGAAACACAAGAAATA
TAAAACCACCATCGGTTTACAGGCCCACACTGAAGTGTTACTTGAAGCCTTCGATATTTC
TTTTAATCTCCAGTCTGTGGTGGAACCCTTACTTCTATTCTGAGCTACTAGACATGCCTC
TACTATGTCTTTATAGGAACTGAGGTAAACGCCACGGTCATCGGGGAGAG
1 EXON 1 36,209,986 36,210,030 - 2 45
CGACCCTATTGATGAAGTGCAGGGATTCCTCTTTGGAAAATTAAG
INTRON 1 - 2 36,208,043 36,209,985 1,943
GTATGTTGATTCATGTTGCTGTGCA..........AGAAGAGTCGGTTCTGTTTCTGTAG
2 EXON 2 36,207,942 36,208,042 2 1 101
AGAACTGTACCCGGCCTTGGAAGGACAGCTGAAAGAGTTCCGGAAGCACCTTGTGGAGAG
CACCAACGAGATGGCCCCCCTGAAAGTCTGGCAGCTGCAAG
INTRON 2 - 3 36,197,636 36,207,941 10,306
GTAATGGGCGCTCAGCTCACTTGAG..........TCCCTGCCTTTGTGTGTGCTTTCAG
3 EXON 3 36,197,544 36,197,635 1 0 92
TATTTCAAGGGAACTATAGGATTACAGCCTGGAGACTCAGCGCTCTTCATCAATGGACTT
CATATCGATTTAGACACCCAGGATATATTCAG
INTRON 3 - 4 36,196,001 36,197,543 1,543
GTATGGAAAATATTTCTATTCTCTC..........ACAAGTAACCTTGCTTTTCCTGCAG
4 EXON 4 36,195,850 36,196,000 0 - 151
TCTGTTTGATACATTGAGGAATGAAGCCCGTGTAATGGAGGGTCTGCACAGGCTGGGAAT
AGAAGGCCTTTCTCTACATAATATTTTGAAGCTGAACATCCAGCCCTCTGAGACTGACTA
CGCAGTAGACATCAGGAGTCCTGCTATTTCC
INTRON 4 - 5 36,192,506 36,195,849 3,344
GTGAGTATTCATTCTGAGTGGTCAT..........TTGTTTTTGTTTTTTATCATTCAAG
5 EXON 5 36,192,386 36,192,505 - - 120
TGGGTCAACAACCTAGAGGTCGATAGCCGATATAACTCATGGCCTTCAAGCTTACAGGAG
TTACTCCGCCCCACGTTTCCTGGCGTCATACGGCAGATCAGAAAGAACCTGCATAACATG
INTRON 5 - 6 36,191,615 36,192,385 771
GTAAGTAGGGCGCTTGCTGCTGTCC..........GTTCTTTTTCCTTTTCCTCTGACAG
6 EXON 6 36,191,529 36,191,614 - - 86
GTTTTCATTATCGATCCTGTACACGAGACCACAGCCGAGTTGATTAGCATCGCCGAGATG
TTCCTCAGCAATCACATACCGCTAAG
INTRON 6 - 7 36,185,969 36,191,528 5,560
GTAACACTGCGCTCATTAGCCGAGC..........CCCCTTTTTCTGCTCCCCTCTGCAG
7 EXON 7 36,185,887 36,185,968 - - 82
GATTGGTTTTATCTTTGTGGTCAATGATTCTGAAGATGTTGATGGGATGCAAGATGCTGG
AGTCGCTGTTCTGAGAGCGTAT
3' upstream sequence
AATTATGTGGCTCAGGAAGTGGATGGCTATCACGCCTTCCAGACTCTCACACAGGTATGT
TTTTACCCCAAATGGCAAATGCTTAGTTTAACTGACTCTAGTTTGTGGTAGGAGAAGAAG
TAGATTCTCATATATACTCTGGTGCTTTATACTTCAGGGTTCCTTATGCTTTATTGTGTC
ACTGGTGAGAATGTATAGATTGCTATGGTTTTCTTTTTCTTTTTTATGCTTGGAATTTAT
TATTATGTGGGGCTTGGCGGAGTCAGGGGTGTGGAGGCTGCAGTACTGGTGGGAGGTTGA
GTACAACCTTCAGAATGGGTCCTCGCCTTCTGTCACAGGATCTAGGGATCAAGCTTGCTG
AGCCTTAATGCTGGCCGTTAGATGCTGTTCTTTAGGGGCCTTCTGGGATATTATAGAATG
CCCTCTGCTTATATGAAATCACCACTTAATGCCTTTGGGCAATGTGATGTTCTCTCCTTG
TTTTTAAAACTACCCAGTCTTTTCTCTTTTGAGACTATCTTATGGTTTCTTTTCTCCCTT
CCCCTTCCTCTTCTTTTCTTTTTTTTTTAATAAAGATTTATTTATTTATTTTATGTATGT
GAGTATACTGTAGCTGTATTTAGACACACCAGAAGAGGGCATTGGATCTCATTACAGGTG
GTTGTGAGCCACCATGTGGTTGTTGGGAATTGAACTCAGGACCTCTGGAAGAGCAATTGG
TGCTCTTAACTACTGAGCCATCTCTCTAGCCCCCACCTTCCCCCTCTTCTTTTCCTCCTC
TCTCTCTTTTGAAGATAGTCAGTCTTCTATAGCCAGGGCTAACCTTGAGCTCTTGACTCT
CCTGTCTTCCCTCCAGGGCTGGCCTGTCAGGTGTGCAGCACCACACCTGCTTGCTTGGTT
TTTTGTTTTTTCCTTTTGAGATAATAAGGTCTTTCTGTATCTGTGCCGGCCGTCTCAGAC
ATGTTCTAGTACACCTGGCTTCTATTCTTAAACATTGTTA..........

Sequence Detail Report

Gene Symbol (Gene ID) Uggt1 (ENSMUSG00000037470)
Transcript ID ENSMUST00000174142
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 82 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
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