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Target CDS Information

Gene Symbol (Gene ID) Uggt1 (ENSMUSG00000037470)
Cross Reference
GO GO:0003980, GO:0005783, GO:0006486, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005576, ...show all
MGI_trans_name Uggt1-005
OTTP OTTMUSP00000054601
OTTT OTTMUST00000097357
UniParc UPI00021CF759
Uniprot/SPTREMBL G3UY73
Vega_transcript OTTMUST00000097357, Uggt1-005
Vega_translation 178942, OTTMUSP00000054601
Definition codon_start:2
protein_id:ENSMUSP00000133971
translation:
XKSHIQQLRVEEDVASDLVMKVDALLSAQPKGEARIEYQFFEDKHRF

Chromosome 1
Length
Position(start - end)
8,955
36,164,517 - 36,173,473
Orient to Chromosome minus
Link Location : (1:36164517-36173473)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Uggt1 (ENSMUSG00000037470)
Transcript ID ENSMUST00000174224
Reports
substitution
cSNPs0
Insertion15
Deletion29
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000174224)
KSHIQQLRVEEDVASDLVMKVDALLSAQPKGEARIEYQFFEDKHRF*
MSMv4 transcript
KSHIQQLRVEEDVASDLVMKVDALLSAQPKGEARIEYQFFEDKHRF*
homology100.00 (47 / 47)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Uggt1 (ENSMUSG00000037470)
Transcript ID ENSMUST00000174224
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AGTTAACAGATTTAAAAATGAAAAAAAAAAAGTTGCTGAGAGTAGACTGG
CAGGTAAACAGATCCGCAGAAACACAGGAAACGGGATGAGCAGTTTATGAGGAGGGAGGA
AAGGCGAGCAAATGAAGAACTAAGGTGTTGCGTTAATCGGGGGACTTAGCTCTTACTCTT
TGCAAAAGCACATTGCAGTTTACTCGTTGTTAGCACTTGGTCATGTGGTTTGCTTAATAA
CAGTGACTTTCCTTAAAAATGATTACTTCCTAGGGCATGGATGTCAGTCTTTTTAAAGAG
GTCTTTGAGTCTTCCAGAATGGATTTCATTTTGTCTCATGCCCTGTACTGCAGGGATGTT
CTGAAGCTGAAGAAGGGACAGCGAGTGGTGATCAGCAACGGAAGGGTGAGCACTTGCTGG
GCTGTGAGCCTGCCTTCACAGGTCTCTGCCTCTCGGGCGCCTTTGAGCCTCCCTTGGGCT
GCACTGGAGCTGCCCTTCTGATGGCTGATGAGGCCTCTCAGTGCAGCTGCATGGGATCCT
GCCTGACGATTATTTGTGTTTAGACACTGGGAGATAGTGAATGTGGGGCTCTCAGATCAG
GAGTCAGGATGGCTGCTTACAGAGTAGGTCTCACTGCTATTTGCTGAGAACCGATGCAGA
CAATACTGTATCTCATGTCAGCCTGCTTAGAAAGGAAGGTATCGGGAAACACACAGGCTC
TGGGGTCTGAGAGATTTTAGGTAAACATTAGCCGCATCTCCTTAGGCCTTATTTTTCATC
TTAGTCATTTTACTAAGGATATGCTTCAGGGCAGGAGTCATAAGGTGCTTGCTGGCTTAG
GTCCCAGCCTGGCAGAGGCTTTCCGGCAGCCGGCGACCGCTGCCCTGCAGCTCTGCCCTC
CCCCTCCTTACCTCACAGATCATTGGGCCTCTGGAGGACAATGAGCTCTTCAACCAAGAT
GATTTCCACCTCCTGGAAAATATCATCCTGAAAACATCGGGACAGAAAAT
1 EXON 1 36,173,435 36,173,473 - 2 39
AAAGTCTCATATCCAACAGCTTCGAGTAGAAGAAGACGT
INTRON 1 - 2 36,170,295 36,173,434 3,140
GTAAGTTTTATACCTAGTAACGAGT..........AAAATTTCATAACTTCATCTTTTAG
2 EXON 2 36,170,199 36,170,294 2 2 96
GGCCAGTGATTTGGTAATGAAGGTGGATGCTCTCCTGTCAGCACAACCCAAAGGAGAGGC
GAGGATCGAGTACCAGTTCTTTGAGGATAAACACAG
INTRON 2 - 3 36,164,524 36,170,198 5,675
GTACAGTTGTTGCTGCACTAACGCA..........TTTGTCATCTGGTTTGCTTTTTTAG
3 EXON 3 36,164,444 36,164,523 2 - 80
GTTTTGACTCAGCTGATAAACATGAATCTAAGAGTATTTATGAATTGCCAATCCAAGCTT
TCCGACATGCCTTTAAAAAG
INTRON 3 - 4 36,163,411 36,164,443 1,033
GTAAAATGCCATTTAAGGAACACTG..........AACTAACACTTGCGTTTCTTTTCAG
4 EXON 4 36,163,221 36,163,410 - - 190
CTTTTACCGCTACGTCTTAGAGCCGGAGATTTCTTTCACTGCAGACAGCAGCTTTGCTAA
GGGACCGATAGCAAAGTTTCTGGATATGCCACAGTCTCCGCTGTTTACTTTGAATCTGAA
CACACCTGAGAGTTGGATGGTAGAATCTGTCAGAACACCATATGATCTGGATAATATTTA
TCTAGAAGAG
INTRON 4 - 5 36,162,364 36,163,220 857
GTAGGGATGTAATTGTTCTCGACTA..........ATGTGCTTTAACTCTGGTCTTTCAG
5 EXON 5 36,162,205 36,162,363 - - 159
GTGGAGAGTATAGTGGCTGCTGAGTACGAGCTGGAATATCTGTTACTAGAAGGTCATTGT
TACGACATCACCACAGGCCAGCCCCCTCGAGGACTACAGTTCACTTTAGGAACTTCAGCC
AACCCAACAATTGTGGACACAATTGTGATGGCCAATCTG
INTRON 5 - 6 36,161,762 36,162,204 443
GTAAGTAATCAGTTTATTGATAGTA..........AGCCTGTACTCTGTTTGTGTCCTAG
6 EXON 6 36,161,747 36,161,761 - - 15
GGATATTTTCAGCTC
3' upstream sequence
AAAGCCAATCCGGGAGCCTGGATTCTGAGACTGAGGAAGGGGCGCTCAGATGACATTTAT
AGGATCTACAGGTAGGACAAGGAGATGGCTTCATTGTAGAGACTGAGCTTTAATTGCGCA
TTATCTGGGCTTACCCCAGGCATCGTGCGTTATAGTCGAGTTCATGATAAAGCCAAGCTT
CTCAGAAGAGTAAGTGTGGGAGAAGTTGTAGGGGATGGGTTGGTTAGCAAGGGGTCTAAG
TGCTGATCAGAGCGAGATCTGTTCTCCATTGCTTTCCCTGTCAGCTCTTATCAGAAGGAT
GCAGATAGCAGGCAGGAGCTCTGACCACTTGATGAGATCTGACTGGAAACAGCAGGGTCG
GTCCTGTTCAGTACGCTGATGGGAGGTGTTTATCATGACCCTGGCTGTTTTGTACATGCA
CAGATCACATGAGCTTTGACTGTGTAGTCTGACTGTCGGTCCTGGTCCCTGGGCTGCAGT
TGTGTAGGTGTACTCCTACACTAGCCTGTCAGTGACAGGAATTGTCTTAAAGTTCAAACG
AACCCCAGAACACCATTTTAAAAATGTGGTCTCTATCCTGTTTAACACAGTTTAAACTCG
TCCTTAGTTCTGTGCCAGTTTGTGTAGGGAATGGTTTTCATTATGGTTTCTGTGAACAGC
CTAATGTGTGTATTTGCTTTGGCTTCATGGCCTCTTACTTGACATGGAGAAGCAGTGTGG
CTTAGTGGGTTTGGTTTTGGTTTTTCTCTCACCCACGCTTGAACTGGACTCAAGTGAGTC
TTCTGCCTTAGTCTCCTGTAGCTGAGACCTCAGGCGTGTGCCTCCATACCTAGCTTGTGC
AGATTTCTTATTCAATAACTTAGAATTTTGTGCTATAGTAATGTCCTTATTGTAAATAGT
GGGCTTTTCCCTGATTCAGTTATTTTCCCAAGAAGGCTTCACAGAATGTTTCTTCTATGG
GCCCTGTCCATCTTCCTCCTTGCCTGGGGCTGTGGTGCCG..........

Sequence Detail Report

Gene Symbol (Gene ID) Uggt1 (ENSMUSG00000037470)
Transcript ID ENSMUST00000174224
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 47 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information