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Target CDS Information

Gene Symbol (Gene ID) Ppp1r42 (ENSMUSG00000025916)
Cross Reference
EMBL AC102570
MGI_trans_name Ppp1r42-007
OTTP OTTMUSP00000061378
OTTT OTTMUST00000110132
UCSC uc007ahb.2
UniParc UPI0002467768
Uniprot/SPTREMBL H3BK71
Vega_transcript OTTMUST00000110132, Ppp1r42-007
Vega_translation 178688, OTTMUSP00000061378
Definition protein_id:ENSMUSP00000135276
translation:
MHVKDLELLLKKLMKLWKMDLNGNPVCLKPKYRDKLILTSKSLEFLDGKEIKDMERQFLM
NWKASKDAKKISKKRRSRSEDASNSYI

Chromosome 1
Length
Position(start - end)
16,340
9,978,816 - 9,995,157
Orient to Chromosome minus
Link Location : (1:9978816-9995157)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ppp1r42 (ENSMUSG00000025916)
Transcript ID ENSMUST00000176398
Reports
substitution
cSNPs1
Insertion37
Deletion34
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num0
synonymous substitutions 9978820 (p.Tyr86Tyr),
non-synonymous substitutions
B6 transcript
(ENSMUST00000176398)
MHVKDLELLLKKLMKLWKMDLNGNPVCLKPKYRDKLILTSKSLEFLDGKEIKDMERQFLM
NWKASKDAKKISKKRRSRSEDASNSYI
MSMv4 transcript
MHVKDLELLLKKLMKLWKMDLNGNPVCLKPKYRDKLILTSKSLEFLDGKEIKDMERQFLM
NWKASKDAKKISKKRRSRSEDASNSYI
homology100.00 (87 / 87)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ppp1r42 (ENSMUSG00000025916)
Transcript ID ENSMUST00000176398
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TGACAATGGTGAGAGAAAAGAATGCTGTCCTCAGTTCTTTTCTTTCTTTC
GCTCTTTCTTTCTTTTTCTTTTACAAAGGCAGATCCTTGTTATGCTAAAGAACTTCATAC
TAGTTGTTGAGGAAAACAGAAACTAACAAAATACAACAGTAAGGCTTTCTGAAAGTTTAC
CCTGATCTAAGCTGAGATAAAGAGGGAATAAAACGTAAGAGGGGTGATCACTTCGGCAGC
ATATGTACTAAAAGTGGAACAATACAGAGATTTGCACGGCCTCTGCACAAATATGACACA
CAAATTTGTGAAACATTCCATATTTTTGTGACTGGGAGCGTGCGGGGCAGGTGGTGGTGG
CGGCGGCGCTGATGGTGAGTGGGATGAATAAACTAAAAACAAACAAACAAACAAAAAACA
GATGGCAGTGGCTCGTGCCTTTCATCCTAACAGAGGTAGTGGATTGATGTCAGAGTTCGA
GGTCAGCCCAAGTTCCAGGACAGACAGAGCTACACAGAAAAACCCTGTCTCAAAAGACAA
CAAAAACAAAAACAAAACAAAAGAGGAAAGAAAACGTGCTATTGATACCCCAAAAGCTGG
AGAATGGAACAGAGCATATCGGAACCCGAGAATCCTGAATAAGACAGGAAGCGGCAAGCT
GCGAGGAGTGCCGTGACTATCAACCCAAGTTTGGGTTTTATCCTAGCAATGAATGTGGAG
TTCTGGCTGTACCTACAGGCTATTCCTTTGGGTCTATACAGGGGCAGGTGTGGTTACCGG
ACACTAAAATAATCAAAGGTGATGGAGAGGGAAACGATAGCCTGCAAATCTTATTCTGCC
CAAACTAACTGGTCTTTTTCGGGACCACCAGTGCACAACACCAACTCTCTGGCGTCCCTG
TCACAAAGAGCCAGACTCAAGGCGGGCCCTGCGGGCTTCCCTGACGTCACGAGACTTAAT
CTGCCTGGGCGTTTGGAGCATTTGGTCGCCTGGCAACCGCCGCTGGCTTT
1 EXON 1 10,009,072 10,009,130 - - 59
GGAGGAGCCTGGCACAAGGACACTGACCAAACCAGTTACAGACCCGACTGGACAGAGCG
INTRON 1 - 2 10,000,138 10,009,071 8,934
GTGAGAAGCCCCCCGAAAAGCCTAG..........AGGGCCTGTTTTGTTTACTTTTCAG
2 EXON 2 9,999,971 10,000,137 - - 167
GATGACCTTTCTCTTTGCAGAAACCTGAGTGTTTTATATTTATATGATAATCGCATTAGT
CAAGTCACTAACCTGAATTACACCACAAATCTGACGCACTTGTACCTACAGAACAATTGC
ATTTCCTGCATTGAAAACCTCAGTTCACTAAAGAAATTGGAAAAACT
INTRON 2 - 3 9,999,540 9,999,970 431
GTAAGTGCATTTCTTTTCTAATCCT..........ATTTGAAGCCATGTCTGTTTTGCAG
3 EXON 3 9,999,401 9,999,539 - - 139
GTATCTGGGAGGCAATTACATTGCGGTCATAGAAGGCTTGGAAGGATTAGAAGAACTAAG
AGAGCTTCATGTTGAAAGCCAGAGGCTCCCTCTAGGCGAAAAGCTTCTGTTTGATCCAAG
AACTCTTCGTTCTCTAGCG
INTRON 3 - 4 9,995,263 9,999,400 4,138
GTAAGGCCACATTCAAATGTTGGGG..........GTTAATGTAGTGATTTTTCTTCCAG
4 EXON 4 9,995,146 9,995,262 - 0 117
AAATCCCTCTCTACTTTGAATATCAGCAACAATAACATTGATGACATAAAAGACTTAGAG
ATCTTGGAGAATCTTAATCACCTGATTGCAGTTGACAACCAGCTGATGCACGTGAAG
INTRON 4 - 5 9,985,710 9,995,145 9,436
GTAACATGAAGTCGACGCAAAGTAT..........CTTCTCTTTTCTTTCCTGACTACAG
5 EXON 5 9,985,592 9,985,709 0 1 118
GACTTGGAGCTTTTACTGAAAAAACTGATGAAGCTGTGGAAAATGGATCTAAATGGAAAT
CCTGTTTGTCTTAAACCAAAATACAGGGACAAACTGATACTGACGTCCAAGTCACTGG
INTRON 5 - 6 9,978,948 9,985,591 6,644
GTGAGTGTTTTACATTAACCCAATT..........TTTTTAACATACATGTCTTCTCCAG
6 EXON 6 9,978,816 9,978,947 1 - 132
AATTTCTTGATGGAAAAGAAATAAAAGATATGGAAAGACAATTCCTAATGAATTGGAAAG
CATCCAAAGATGCCAAGAAAATCAGCAAGAAAAGGAGGAGCAGAAGTGAGGATGCAAGCA
ACTCCTACATAA
3' upstream sequence
GTAAGTGCTCACCACTCGCCACCGTGTCCCTCACCACCGTGTCCCTCACCACCATGTCCC
TCGCCACCACGTCCAGCAAAGGGAGCAGTGTCACACAAGCTACAAAAAACAAGTGGGTAG
CGGTGAGGGTTTACTGCGGTGGGGATTTCGGCTTTAATGTGTGTTCAGTTACCTAGTTGT
CAATGAAGATAAAGATAGAAATTTTACCTGCAGTGAAAATGGTAGCCAGTATGAACAAAC
CATGCACTAGGTTCACACTGGCTGAGCCTGTGTTAGCCACATACAGGATCATGCTGAGTA
TGGGGAAAATATGAGGTTTTATTCCAGCAAGTACATATGTCAGTTGCATAAAATGATAAA
AAAATTATAAACTGTGAAACCTAAGTCACTATAACATCAGTGCAAAACAATCCCATTATT
TTTATTAAGATAAAAATTTGTATACATATCACATCCATAACCCAGCACTCAGGATGCTGA
AACAGGAGGATCACAGTCAGTTTAAGGCCAATCTGAGTTAATGATGAATTCCATGACAGC
CTAAGCAACGGAATGAGGTCCAGTAAAATCAACAAACAAATATTAAAATTAAATATAAGT
CAACCACATTTGACCTGCATTCTGTGGCCAGTCCATGTCTTGTGCACATGCTAGAGCCTA
AATGCTTGGGTTACGGTATGCTTGGCTGTTAGAAACGACATACTAGCCTCTGCCTAATTA
ATGCAACTAAATACAAATAAGAGTAATGAAACAGTTATCTTGGCCATATGAAGAAGCCTA
CCAGACCTGACCCACAGTCTTTAGTGGAATAAGCCTCTTGCACTCACAATAGTGTGTGAG
TCTCAGCATCTTGCTCCACAACTAACTTTTCTTGGTACCTTTGGATGCAGGGGCTGGAAG
CATTCCAGGGCAGCTGTGAGGGATTGGACCCCGGGCAGGACAGTGGCAGAGACAGCACAG
AGGTCTGTCACTCTAGGAGAAGGTTGAAGTGAGGAAGGTG..........

Sequence Detail Report

Gene Symbol (Gene ID) Ppp1r42 (ENSMUSG00000025916)
Transcript ID ENSMUST00000176398
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 87 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information