top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Arhgef2 (ENSMUSG00000028059)
Cross Reference
EMBL AC145168
GO GO:0000902, GO:0005089, GO:0005515, ...show all
goslim_goa GO:0000902, GO:0003674, GO:0005575, ...show all
MGI_trans_name Arhgef2-013
OTTP OTTMUSP00000061982
OTTT OTTMUST00000110939
UCSC uc008pvu.2
UniParc UPI0002467716
Uniprot/SPTREMBL H3BL15
Vega_transcript Arhgef2-013, OTTMUST00000110939
Vega_translation 187588, OTTMUSP00000061982
Definition protein_id:ENSMUSP00000135612
translation:
MTGRDKTREKEKMKEAKDARYTNGHLFTTISVSGMTMCYACNKSITAKEALICPTCNVTI
HNRCKDTLANCTKVKQKQQKAALLRNNTALQSVSLRSKTTTRERPTSAIYPSDSFRQSLL
GSRRGLSSLSLAKSVSTTNIAGHFNDESPLGLRQILSQSTDSLNMRNRTLSVESLIDEGV
EVFYNELMSDFEMDEKDFEADSWSLAVDSSFLQQHKKEVMKKQDVIYELIQTELHHVRTL
KIMTRLFRTGMLEELQM

Chromosome 3
Length
Position(start - end)
17,861
88,616,637 - 88,634,499
Orient to Chromosome plus
Link Location : (3:88616637-88634499)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Arhgef2 (ENSMUSG00000028059)
Transcript ID ENSMUST00000176539
Reports
substitution
cSNPs0
Insertion22
Deletion19
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000176539)
MTGRDKTREKEKMKEAKDARYTNGHLFTTISVSGMTMCYACNKSITAKEALICPTCNVTI
HNRCKDTLANCTKVKQKQQKAALLRNNTALQSVSLRSKTTTRERPTSAIYPSDSFRQSLL
GSRRGLSSLSLAKSVSTTNIAGHFNDESPLGLRQILSQSTDSLNMRNRTLSVESLIDEGV
EVFYNELMSDFEMDEKDFEADSWSLAVDSSFLQQHKKEVMKKQDVIYELIQTELHHVRTL
KIMTRLFRTGMLEELQM
MSMv4 transcript
MTGRDKTREKEKMKEAKDARYTNGHLFTTISVSGMTMCYACNKSITAKEALICPTCNVTI
HNRCKDTLANCTKVKQKQQKAALLRNNTALQSVSLRSKTTTRERPTSAIYPSDSFRQSLL
GSRRGLSSLSLAKSVSTTNIAGHFNDESPLGLRQILSQSTDSLNMRNRTLSVESLIDEGV
EVFYNELMSDFEMDEKDFEADSWSLAVDSSFLQQHKKEVMKKQDVIYELIQTELHHVRTL
KIMTRLFRTGMLEELQM
homology100.00 (257 / 257)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Arhgef2 (ENSMUSG00000028059)
Transcript ID ENSMUST00000176539
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCTGCTGGATACTATCTTAACTCTTTCTAGAGAAATAGCCCAGATGAGGG
GTAGTGGAGAATCTTGGGAGGCCTGGTGGAGACACATTTGCGGATGTGGGCAAAGCAAGG
GCTTCATGTGAGAACTCCACACAATTCCAGGGTCAGAGTTTCTGCTATCCATCTGCTGCC
TCTTCGGTTCCCTCGGTCACTGGCATGCTGTCCAAGGCTGTGTCCATGAGTGATATCAAT
CTCCTCTCGGACTGCTCAGATCCAAATGGTGAGTGAAAGCCGAGAATGGCGGTCCCTTTC
GCCATTCCTGTCATCAGCTGTGCCAGAGTTAGCTGTTTGGAGTTCAGACGACTGACATCA
TACACTCCTGGGGCTCAAGAGAGGGATCTTGTTTGTTTGTTAAAGAGCTTGCTTTTGAGA
CAGGGCTTCTCTGTGTCACCCTGGCTGTCCTAGAACTTGCTCTGCAGATCTGCCTGCCTC
TGCCTCTGCCTCCACCACCTGGCTAACGTGAAGGATCTTATTCAGGACACCAGCATCTCT
GAGACTGTCCTGCCAGTGGCGGAGGACACGGATAGAAGGGGTCTTTCCAGGCTTCTCCAT
CACTAGAGATGGAGGATGGTTACTTAAGGCACATCTTTGTCCTGAAGATGACCTAAGCAG
GGACGGGCAAGATGGCTCTCTGGGCTTATTGGGTAAAGGTGCCACAAGTCTGACAACCTG
AGTTCAATCTCGGGTACCCACAGGGTGGAAGGAGAGGCTCTTCCTGATCGCCACATGCCT
GCCCTTCCTCTGATGTACACACAAACAAATAACTGAATAAAGATTAGAAGATGGAGTATA
GGGAGCTCAGTGCTGAGCCTCGGCCCTCTCTGTTTACCAGAACAGGAAGGAACCATGATT
GGTCCCAGCTAGCTCTTCACTTTAGCTTGCTCACAAGTTGTTCAGCTGTGCTCTCCCCAG
ACCCCGCCCTCTGTCCTTGCTCCCCAGTGGCTGCCCTCAGGAATGGCGTC
1 EXON 1 88,615,367 88,615,521 - - 155
ACATGCACCTGCAGCCTGGGAACCTGATCCAGGTGGAGGGGGTTGGGCAGGTAGCCTTAG
GTGCCTTTGTCTGGCTTTTTACTAGACTCCTCTCTTTTCCTTGTATGCCTTGCAGGTAAC
TCATCTCAGTCCTATGTCACAGACCTCAGCAAATG
INTRON 1 - 2 88,615,522 88,616,560 1,039
GTGAGTTTGGGGGATTCTGAAAGCC..........TTATCTCTTCCCTGTCTCTCTGCAG
2 EXON 2 88,616,561 88,616,654 - 0 94
TGGTAAACAGCTGGAAGAGGACTCGGGGACCTGGGCAGGCTCCTCCCTGCGACGGACCTT
CAGCTTCCTCTTGGGCATGACCGGCAGGGACAAG
INTRON 2 - 3 88,616,655 88,629,786 13,132
GTAGGAGTCAGCCTGGGAAACAGAG..........CTTCTGTCTCTCAATCTTTCCACAG
3 EXON 3 88,629,787 88,629,931 0 1 145
ACCCGGGAAAAGGAGAAGATGAAGGAAGCTAAAGATGCCCGCTATACCAACGGCCACCTC
TTCACCACCATCTCCGTCTCCGGCATGACCATGTGCTATGCCTGTAACAAGAGCATCACA
GCCAAGGAAGCCCTCATTTGTCCTA
INTRON 3 - 4 88,629,932 88,631,910 1,979
GTAAGTTTTTGGTCCCAAAGGTGAC..........ACCCTCTCTACCCCCACCCTGCCAG
4 EXON 4 88,631,911 88,631,978 1 0 68
CATGTAACGTGACCATCCACAACCGCTGTAAAGACACCCTGGCCAACTGTACCAAGGTCA
AGCAGAAG
INTRON 4 - 5 88,631,979 88,632,275 297
GTGAGCTAGATGGCAGAGTGGGCAG..........GTCTCTCTTCTGCTCTGTGTCACAG
5 EXON 5 88,632,276 88,632,339 0 1 64
CAACAGAAAGCTGCACTGCTGAGGAACAACACTGCTTTGCAGTCTGTCTCCCTTCGAAGT
AAGA
INTRON 5 - 6 88,632,340 88,632,912 573
GTGAGTTCACAGGGCCACCAAGCCA..........TCCTGCTTGGCCTCCTTCCTTACAG
6 EXON 6 88,632,913 88,633,042 1 2 130
CGACCACCAGAGAGCGGCCAACGTCTGCCATTTACCCTTCCGACAGCTTCCGGCAGTCCC
TCCTGGGTTCTCGGCGGGGCCTCTCCTCCTTATCTTTGGCCAAAAGTGTTTCCACTACCA
ACATTGCTGG
INTRON 6 - 7 88,633,043 88,633,257 215
GTGAGCTTCTGTTTGGGGCAGAGGG..........TGCAGATGGCCTCCACTTCCTTCAG
7 EXON 7 88,633,258 88,633,367 2 1 110
ACATTTCAATGATGAGTCTCCTCTGGGGCTGCGTCAGATCCTCTCCCAGTCCACAGACTC
CCTCAACATGCGGAACCGAACCCTGTCCGTGGAATCCCTTATTGATGAAG
INTRON 7 - 8 88,633,368 88,633,499 132
GTGAGCAGACCCGGCCCTGGGGAGA..........GCCAGCGGCACTGATGCACACGCAG
8 EXON 8 88,633,500 88,633,646 1 1 147
GTGTAGAAGTGTTCTACAATGAGCTGATGAGCGACTTTGAGATGGATGAGAAGGACTTTG
AGGCGGATTCTTGGAGCCTTGCCGTGGACAGCAGCTTCCTGCAGCAGCACAAAAAGGAAG
TGATGAAGAAGCAAGATGTCATCTATG
INTRON 8 - 9 88,633,647 88,634,409 763
GTATGCTAAGGCCACTTTGGTCCCC..........GAACAAATGTCCCTTTGTCCCGTAG
9 EXON 9 88,634,410 88,634,499 1 - 90
AGCTGATCCAGACAGAGCTGCACCACGTGAGAACCTTGAAGATTATGACCCGCCTCTTTC
GCACTGGGATGCTGGAAGAGTTGCAGATGG
3' upstream sequence
AGCCAGAAGTGGTCCAGGGCCTGTTCCCCTGCGTGGATGAACTCAGTGACATTCACACAC
GTTTCCTTAATCAGCTTCTGGAACGGCGGCGCCAGGCTCTATGTCCAGGCAGCACCCGGA
ACTTTGTCATCCATCGTTTGGGTGACTTGCTCATCAGTCAGGTAGGAGAAGACACACTTG
AGCCCGTTCATGAATGCGTGTGAGCGTGTGGAGGTCAGGAGGCAGTCCTGGGAGTTGGTT
CTTCCCCATCATGTGAGTCCCAGGATTTGAATTCAGGTTGCAAGGCTTGCTAGTAAGGGC
CATCTTACTGGCCTAGGACTAAACAGTTCTTAGCTCTAGCCAAACTCTGGTGATCAGAAG
GGAAGCCAAGCAGGGGACAACTGGAGAGGAGGAAGCAGCCTAACTGAAGGCCAGAGGTGT
GCTGAGGGCTGAGGTGCGGCTCTGTAGGAAATGCTCACCTAGTCTTGCTCTCCCGACTTC
CAGTTCTCAGGTTCCAATGCTGAGCAGATGCGCAAGACCTACTCAGAGTTCTGCAGCCGC
CACACCAAGGCCTTAAAGCTCTATAAGGAGCTGTATGCTCGAGACAAACGCTTCCAACAG
TTCATCCGGGTGAGCAAGGACCTCCAAGGCCAAGCCCAGCCTTCTCACGGCTCAAACCCA
AACTCTCCCATCCCCAGGGTAGCGTATGGGAGCTGTGTGCTTATACAGGGCAGCCCCTCG
AGACTCTTGTGGACTGCGCTCCTAGATCTCTTGTTTGTTGAGACATGGCCTCTCTATGCT
GCCCTGGCTGTCATGGAACTCACTATATAGATGTGGCTGGCCTCAAAACTCAAAACCTGC
CTTCCTGTACTGCTATTAAAGGCATGTGACACTACACCCAGCTTACTCTTAGATCAACGG
CCACCCCTTACTGGGCAAGAGGATGTTGGTCTAGTTTTCATACCATCATTGGTTTGCTCG
TCACCACAGATCTGTGGCATTCTCTTACTCATTTCCCAGA..........

Sequence Detail Report

Gene Symbol (Gene ID) Arhgef2 (ENSMUSG00000028059)
Transcript ID ENSMUST00000176539
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 257 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information