MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Fbxw17 (ENSMUSG00000037816)

Cross Reference

EMBL	AC165366
GO	GO:0003674, GO:0005575, GO:0031146
goslim_goa	GO:0003674, GO:0005575, GO:0008150, ...show all
MGI_trans_name	Fbxw17-013
OTTP	OTTMUSP00000061293
OTTT	OTTMUST00000110010
UniParc	UPI00001E820E
Uniprot/SPTREMBL	H3BJ96
Vega_transcript	Fbxw17-013, OTTMUST00000110010
Vega_translation	214453, OTTMUSP00000061293

Definition

protein_id:ENSMUSP00000134899
translation:

SFHLPDTMTPHLMQGHGSQTILLTSSCSSLDFISRIQTVSSLLPWTCPCVSMCGIKRTHH
LSSRAVTICSGDLTDGPVDSPT

Chromosome

Length
Position(start - end)

1,128
50,432,185 - 50,433,314

Orient to Chromosome

plus

Link

Location : (13:50432185-50433314)
/

Detail Map

name	Gm8739 (ENSMUSG00000101136)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm8739 note : predicted gene 8739 [Source:MGI Symbol;Acc:MGI:3644775]

name	Fbxw17 (ENSMUSG00000037816)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Fbxw17 note : F-box and WD-40 domain protein 17 [Source:MGI Symbol;Acc:MGI:1923584]

name	Fbxw17 (ENSMUSG00000037816)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000046974

name	Fbxw17 (ENSMUSG00000037816)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000176479

name	Fbxw17 (ENSMUSG00000037816)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000176772

name	Fbxw17 (ENSMUSG00000037816)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000176543

name	Fbxw17 (ENSMUSG00000037816) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS36661.1 RefSeq_peptide:NP_780610 RefSeq_mRNA:NM_175401.3 RefSeq_mRNA_predicted:XM_006516827.2 RefSeq_peptide_predicted:XP_006516890.1 RefSeq_peptide_predicted:XP_006516892.1 Vega_transcript:Fbxw17-001 Vega_transcript:OTTMUST00000109999 Uniprot/SPTREMBL:Q8CFE8 UCSC:uc007qkl.1 EMBL:AC165366 EMBL:BC040428 GO:GO:0003674 GO:GO:0005575 GO:GO:0031146 MGI_trans_name:Fbxw17-001 Vega_translation:214449 Vega_translation:OTTMUSP00000061289 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0009056 protein_id:AAH40428.1 OTTP:OTTMUSP00000061289 OTTT:OTTMUST00000109999 UniParc:UPI00000E8FED
definition	note : transcript_id=ENSMUST00000046974 protein_id : ENSMUSP00000041750 translation : MAPQLGPHELQHIFSFLEARDLLRAAQVNKVWNEVSMTKELWRQLCLRRWASCKAFPVVVGTQTWKKYYFCRSELEFRMESGRPQDFICKAISGHTGMIDQLAYVSPHEYRFDEGARSVVCTVSSDCTVRAWDLQEGSEIWSSAVQPAPLVNVVAYPQLQLVVTVDIQGLIMGWKAKTGSEWAFFSLPASCSSMEACDHPEGPFLLVACDEGTLYTMTVPQLQVVSRVPTFPHSSVSLTCSPDTQWVFVSAQGSDLGPKVFYTQPLLHPSEDRLPVSTTLPIRLSSRACWAPDEAARLMVIHRDDGGVHLVITTFELKATKSRDRLSILAQQLASFHLPDTMTPHLMQGHGSQTILLTSRSELVLFTIHGLQLMAFQDHQRPITSMWVDPDRVITAALDLSLRVYVWNKKNTSPVLKSCYHLLGGSHRWASGFTHVKSDSRSIAGVEARSTGTSILRSYCFKVKLD

name	Fbxw17 (ENSMUSG00000037816) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Fbxw17-012 Vega_transcript:OTTMUST00000110009 Uniprot/SPTREMBL:H3BLQ7 EMBL:AC165366 GO:GO:0003674 GO:GO:0005575 GO:GO:0031146 MGI_trans_name:Fbxw17-012 Vega_translation:214452 Vega_translation:OTTMUSP00000061292 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0009056 OTTP:OTTMUSP00000061292 OTTT:OTTMUST00000110009 UniParc:UPI0002467799
definition	note : transcript_id=ENSMUST00000176772 protein_id : ENSMUSP00000135878 translation : LKATKSRDRLSILAQQLASFHLPDTMTPHLMQGHGSQTILLTSRIQTVSSLLPWTCPCVSMCGIKRTHHLSSRAVTICSGDLTDGPVDSPT

name	Fbxw17 (ENSMUSG00000037816) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Fbxw17-013 Vega_transcript:OTTMUST00000110010 Uniprot/SPTREMBL:H3BJ96 EMBL:AC165366 GO:GO:0003674 GO:GO:0005575 GO:GO:0031146 MGI_trans_name:Fbxw17-013 Vega_translation:214453 Vega_translation:OTTMUSP00000061293 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0009056 OTTP:OTTMUSP00000061293 OTTT:OTTMUST00000110010 UniParc:UPI00001E820E
definition	note : transcript_id=ENSMUST00000176543 protein_id : ENSMUSP00000134899 translation : SFHLPDTMTPHLMQGHGSQTILLTSSCSSLDFISRIQTVSSLLPWTCPCVSMCGIKRTHHLSSRAVTICSGDLTDGPVDSPT

name
type	STS
link
xref	UniSTS_NUM:180531 UniSTS:C85886 WI_MRC-RH:302929
definition	note : map_weight=1 standard_name : C85886

name
type	misc_feature
link
xref
definition	note : contig AC165366.2 65013..241514(1)

name	Gm8739 (ENSMUSG00000101136)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000125135 Vega_transcript:OTTMUST00000125135 Clone_based_vega_transcript:RP23-76L8.1-001 MGI_trans_name:Gm8739-001 OTTT:OTTMUST00000125135 RNACentral:URS0000773278
definition	note : antisense note : transcript_id=ENSMUST00000185962

name	Fbxw17 (ENSMUSG00000037816)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000110001 Vega_transcript:OTTMUST00000110001 UCSC:uc007qkm.1 MGI_trans_name:Fbxw17-008 OTTT:OTTMUST00000110001
definition	note : processed_transcript note : transcript_id=ENSMUST00000176424

name	Fbxw17 (ENSMUSG00000037816)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000110006 Vega_transcript:OTTMUST00000110006 MGI_trans_name:Fbxw17-009 OTTT:OTTMUST00000110006
definition	note : retained_intron note : transcript_id=ENSMUST00000176508

name	Fbxw17 (ENSMUSG00000037816)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000110005 Vega_transcript:OTTMUST00000110005 MGI_trans_name:Fbxw17-003 OTTT:OTTMUST00000110005
definition	note : retained_intron note : transcript_id=ENSMUST00000177541

name	Fbxw17 (ENSMUSG00000037816)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000110007 Vega_transcript:OTTMUST00000110007 MGI_trans_name:Fbxw17-010 OTTT:OTTMUST00000110007
definition	note : retained_intron note : transcript_id=ENSMUST00000176470

name	Fbxw17 (ENSMUSG00000037816)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000110011 Vega_transcript:OTTMUST00000110011 MGI_trans_name:Fbxw17-015 OTTT:OTTMUST00000110011
definition	note : retained_intron note : transcript_id=ENSMUST00000177233

name	Fbxw17 (ENSMUSG00000037816)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000110008 Vega_transcript:OTTMUST00000110008 MGI_trans_name:Fbxw17-014 OTTT:OTTMUST00000110008
definition	note : retained_intron note : transcript_id=ENSMUST00000176298

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Fbxw17 (ENSMUSG00000037816)
Transcript ID	ENSMUST00000176543

Reports
substitution
cSNPs	0
Insertion	6
Deletion	5
SNPs	-1kb 50427223(c.-4962T>C), 50427257(c.-4928A>T), 50427439(c.-4746T>C), 50427490(c.-4695C>T), 50427522(c.-4663T>G), 50427559(c.-4626T>G), 50427669(c.-4516G>A), 50427733(c.-4452C>A), 50427751(c.-4434G>C), 50427763(c.-4422C>G), 50427810(c.-4375G>A), 50427984(c.-4201T>C), 50428077(c.-4108T>G), 50428185(c.-4000C>A), 50428284(c.-3901G>A), 50428290(c.-3895C>G), 50428587(c.-3598C>G), 50428614(c.-3571A>G), 50428652(c.-3533A>T), 50428666(c.-3519G>A), 50428695(c.-3490T>C), 50428765(c.-3420G>A), 50428797(c.-3388A>T), 50428839(c.-3346G>A), 50428907(c.-3278G>T), 50428941(c.-3244T>C), 50428992(c.-3193T>C), 50428993(c.-3192T>C), 50429138(c.-3047A>G), 50429171(c.-3014A>G), 50429193(c.-2992T>C), 50429254(c.-2931T>C), 50429265(c.-2920T>C), 50429350(c.-2835C>T), 50429414(c.-2771T>C), 50429418(c.-2767G>A), 50429451(c.-2734G>A), 50429572(c.-2613T>A), 50429702(c.-2483G>A), 50429734(c.-2451C>A), 50429828(c.-2357G>A), 50429978(c.-2207A>G), 50430091(c.-2094A>T), 50430092(c.-2093T>A), 50430121(c.-2064A>C), 50430154(c.-2031G>A), 50430376(c.-1809A>G), 50430410(c.-1775C>T), 50430519(c.-1666A>G), 50430639(c.-1546G>A), 50430666(c.-1519T>C), 50430672(c.-1513G>A), 50430708(c.-1477A>G), 50430738(c.-1447G>A), 50430742(c.-1443C>T), 50430821(c.-1364G>A), 50430866(c.-1319A>G), 50430920(c.-1265C>A), 50430938(c.-1247C>A), 50430995(c.-1190T>G), 50431030(c.-1155T>C), 50431031(c.-1154G>T), 50431103(c.-1082C>T), 50431157(c.-1028T>C), 50431525(c.-660T>C), 50431567(c.-618C>T), 50431602(c.-583T>C), 5'UTR CDS 3'UTR INTRON 50432659(c.232+104A>G), 50432879(c.232+324C>T), 50433141(c.233-157G>C), 50433226(c.233-72A>T), 50433258(c.233-40G>A), +1kb 50435121(c.1807C>T), 50436031(c.2717C>A), 50436682(c.3368G>T), 50436725(c.3411G>A), 50437008(c.3694G>C), 50437071(c.3757G>A), 50437490(c.4176G>A), 50437867(c.4553T>C), 50438614(c.*5300T>C),
Insertions	-1kb 50428375 (c.-3810_-3809insCCA), 50429088 (c.-3097_-3096insTTTT), 50429093 (c.-3095_-3092dupTTTT), 50430054 (c.-2131_-2130insCTC), 5'UTR CDS 3'UTR 50433580 (c.270_271insAAAACAAA), INTRON +1kb 50437815 (c.4501_4502insA),
Deletions	-1kb 50428051 (c.-4133_-4128delGCATGG), 50428739 (c.-3445delA), 50429044 (c.-3140delC), 50429431 (c.-2753_-2752delCT), 50431239 (c.-945delA), 5'UTR CDS 3'UTR INTRON +1kb
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000176543)	SFHLPDTMTPHLMQGHGSQTILLTSSCSSLDFISRIQTVSSLLPWTCPCVSMCGIKRTHH LSSRAVTICSGDLTDGPVDSPT*
MSMv4 transcript	SFHLPDTMTPHLMQGHGSQTILLTSSCSSLDFISRIQTVSSLLPWTCPCVSMCGIKRTHH LSSRAVTICSGDLTDGPVDSPT*
homology	100.00 (83 / 83)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Fbxw17 (ENSMUSG00000037816)
Transcript ID	ENSMUST00000176543

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AATGTCCAGTCACTTGCCAGAGGTGAAACCCTTACTGAGTGCCAGGACCT AAACTAAAAAAGTTAGAGCATAGAAAGAAGAGCTAGTAGAACACAGGAAGGAGATCTGAG AGCTAGGGAAGAAGATCATTAGAGAATAGCAGTTTGGTACAGAGGGCATAGGATGCTGTA GCCCACAGCCTAGAAGGGGGACATGAAGATGAGCTCGATTGCCCAGTTAGGCCTAGTATT GCATTATGTGGGCAGCCAGCTGTCCAGGCAGTCCTACCAGAGGCTGAAGTCAGCCTGGGG CTGGAGGGTTTTGGGAACTCTCAGGTTCCTCACCACACTGTGACCATATACGGGTGTTTC AACAGGTGTTCTACACTCAGCCCTTGCTGCACTCATCAGAAGACAGACTTCCTGTCTCCA CTACCCTCCCCATCAGGCTGAGCTCCAGAGCCTGCTGGGCTCCGGATGAGGCAGCCAGAC TGATGGTGATACACAGAGATGACGGTGGCGTGCATCTGGTTATCACTACCTTCGAGTTAA AGGCCACCAAGTCCAGGGACAGATTGAGCATCCTTGGTAAGGTCCCTGTGCTGGCCACAG CCTTCAGTTGGAACTTCAGGACACTGCTGTTCACGGTTCCTCTAGAACAGTCTCTTTTCC CTTCCGGGGAAGGAGAGGCAGAGTGGCCTGGATGCTTTGCTGCATGTTTCATGTACCGGG TGATAGAATGCTCAGTACATGTTGGTCCCTGTGTGGTGCTGGGCTTCAGAAGTAAATTCC ACGCCCACACCCATGGTCTCTTCCTCTGTGGGTGGGGCCACCCCAGCATTTTGCTGCCAC TGGACTGATCTTTAGGGGGTCTGGCTGATTGGCTCAGGGGCAGGGGCAGAGCTCTCCAAC TGCAAGAGCCCATATTTTTTTTTCAGTACACCAGATTGTCGGGTGAGGCACATAGCCATA CCAGAGAAGCAACCTGTATGCTTTTGTTCTCCCAAGCACAGCAGCTGGCC
1	EXON 1	50,432,185	50,432,261	-	2	77	AGCTTCCACCTGCCGGACACTATGACTCCTCACCTCATGCAGGGCCATGGCTCCCAAACG ATCCTGCTCACCTCCAG
	INTRON 1 - 2	50,432,262	50,432,400			139	GTCAGAGCTGGTGCTCTTCACCATA..........ACTTTCCACTCTTGGGAATCCACAG
2	EXON 2	50,432,401	50,432,555	2	1	155	CTGTAGCTCACTTGACTTCATTTCAAGGATCCAGACCGTGTCATCACTGCTGCCTTGGAC CTGTCCTTGCGTGTCTATGTGTGGAATAAAAAGAACACATCACCTGTCCTCAAGAGCTGT TACCATTTGCTCGGGGGATCTCACAGATGGGCCAG
	INTRON 2 - 3	50,432,556	50,433,297			742	GTAATTTAATTGACTGTTCTCCAGC..........CCTGGCGTGTCCTCCTCCTTTGTAG
3	EXON 3	50,433,298	50,433,763	1	-	466	TGGATTCACCCACGTGAAGAGTGACAGCAGAAGCATTGCTGGGGTGGAAGCCAGAAGCAC TGGGACAAGTATTCTGAGGTCATATTGCTTCAAGGTTAAGCTTGACTAGACGCCACCAGT TGAAGATGCTCTGGCTTGGTGTGCGTGCAAAGTCCTTACCAAAGATGTTGTCAACTTTGG AAAAAAAACTAGCAAGATGCCTGCTTCCTAACAAAATGCCTGCTGCCTTCTCACAGAGAG CCGATGAAGTGGTTTCTGTCATCTTACATTTCACTGTCCTGCTCAAACAAGGGAGAATAA GTCCCCTCTTCAGGCGCTTTCCCAGGTGGCACGGTTTCCCAGGTGGTCACAGACAGAGTG GACTGTTTGTGGTAGTGCTGAATTTATAGCCTGCTCGTTTGCAGTGTCCAGATGGCAACA GAGTTGTTTTTGTTACCAAGAATGTAATTAAAATATTTTTATTTGC
	3' upstream sequence						CTGTGCTGTAGAGACACATTCCTGCATGAACTTTGCTGTCATTGAGATAAATTCTGTGAG ATCCATCTCAAAAAAACTCAAGGTCACCAACAAAGCAGAGTGATGGTGGCAGCTTTAGAG TTGGCCAGCATGGGGGCCCTGGCTGCATCAGTGGGTGCCCACTAGGCTTCTTAATTGCAA GCAGTATGTGCTGGCAGTCACCCACTGAAACCAAAAATGGACCTTGGTGGATGTCAATAG GGCACCTCTCTTTTAAAGAGAAGGGTGGAGGGCGAGAATTGAGCCAGGTAGCATGGCAGC AGAGCACAGCCAGGCTCTGTTCTGCCTCTGCTCACTTCTGGCACCCTGCTTCTTATGGTA ATCATTTAAAAACAGTGCTGTGTATCATAGATGCCTGTGGTCATGTAGGACATAGATGGT GCCGTGAGAGCGTCTACCCTGAGGCTGTCAGTGGGAGTCCTAACCTAGCTCCACCACAGT TATATATGCTGTTCAATGACTCTGAGAATGAGGGTAAGCAGGACAGAGCCATCCCAAGAG AGCCATGGAGAAGGGGGTGGAGAACAATGAGAAAGAGAAACCAGCAGACATGAATATGGT GGTCCAGCAAGAAAGACAACTGTCATGTTCTAAAGATGACAGGAAGGATCAGATCAGCCA AAGATGAGGATTTCTGCTGGAGATGTCATGGGCATGTTCCATTTGCAGGTCATATTAAGA GCAGCATCCTCAAGACACAGATGAATTCCTGTTAAAATCCCTCCTTGGGAAAGTGTGGGC TCTGACATTAGAGCGATGAAAGCTGGGCCTAGTGGCCCTACTCAAGAACACAAACAGCTC TAGGGACCTTGCTCTGGAGTTGTGAGCCAGCTTGGTAAGGGAAGTCTTATTGGAGACATA GGAAGCTCAGGTACCAAGGCTAGCTAGTTCATCTTGATGAATGTATTGATCTTGGGCGTG GTGCTTTGGGCCTCAAGAGGAGCCCTGGAGAAATTGCTAC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Fbxw17 (ENSMUSG00000037816)
Transcript ID	ENSMUST00000176543

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 83 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information