top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Smarca2 (ENSMUSG00000024921)
Cross Reference
EMBL AC118249, AC118472
GO GO:0000790, GO:0001105, GO:0005515, ...show all
goslim_goa GO:0000228, GO:0000988, GO:0003674, ...show all
MGI_trans_name Smarca2-005
OTTP OTTMUSP00000058199
OTTT OTTMUST00000104064
UCSC uc008hbn.1
UniParc UPI00024675EB
Uniprot/SPTREMBL H3BJK2
Vega_transcript OTTMUST00000104064, Smarca2-005
Vega_translation 222480, OTTMUSP00000058199
Definition protein_id:ENSMUSP00000135017
translation:
MSTPTDPAAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPLSTM
GSADFPQEGMHQLHKPMDGIHDKGIVEDVHCGSMKGTSMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPISGGGPTPPQMPPSQPGALIPGDPQAMNQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQQQQQQQQQQQQQQQQQQQQQQ
QPQQPQQQAQAQPQQQQQQQQQPALVSYNRPSGPGQELLLSGQSAPQKLSAPAPSGRPSP
APQAAVQPTATAVPGPSVQQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYR
LQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETA
LNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSV
AGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYL
LQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGEPALGPDGEPIDESSQ
MSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESESDYEEEDEEE
ESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAIS
ERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEH
KRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTT
YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVDLNEEETILIIRRLHKVLRPFLL
RRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMN
TIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNH
RVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTR
AGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA
AKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARRE
EEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRG
SRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPVKEDVEKAKKR
RGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKDLPEYYELIRK
PVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQK
IAKEEESEEESNEEEEEDDEEESESEAKSVKVKIKLNKKEEKGRDTGKGKKRPNRGKAKP
VVSDFDSDEEQEENEQSEASGTDNE

Chromosome 19
Length
Position(start - end)
157,649
26,619,720 - 26,777,370
Orient to Chromosome plus
Link Location : (19:26619720-26777370)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Smarca2 (ENSMUSG00000024921)
Transcript ID ENSMUST00000176769
Reports
substitution
cSNPs19
Insertion107
Deletion159
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num16
non-synonymous num3
synonymous substitutions 26630719 (p.Ser135Ser), 26630989 (p.Gln225Gln), 26631019 (p.Gln235Gln), 26640446 (p.Pro292Pro), 26640485 (p.Ala305Ala), 26649055 (p.Tyr426Tyr), 26651707 (p.Arg513Arg), 26654343 (p.Ala519Ala), 26681906 (p.His865His), 26683863 (p.Leu895Leu), 26710487 (p.Arg1115Arg), 26716177 (p.Glu1202Glu), 26720917 (p.Ser1270Ser), 26774295 (p.Ser1463Ser), 26776201 (p.Pro1500Pro), 26776231 (p.Glu1510Glu),
non-synonymous substitutions 26631018 (p.Gln235Pro), 26631093 (p.Gln260Pro), 26640423 (p.Ala285Thr),
B6 transcript
(ENSMUST00000176769)
MSTPTDPAAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPLSTM
GSADFPQEGMHQLHKPMDGIHDKGIVEDVHCGSMKGTSMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPISGGGPTPPQMPPSQPGALIPGDPQAMNQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQQQQQQQQQQQQQQQQQQQQQQ
QPQQPQQQAQAQPQQQQQQQQQPALVSYNRPSGPGQELLLSGQSAPQKLSAPAPSGRPSP
APQAAVQPTATAVPGPSVQQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYR
LQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETA
LNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSV
AGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYL
LQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGEPALGPDGEPIDESSQ
MSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESESDYEEEDEEE
ESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAIS
ERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEH
KRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTT
YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVDLNEEETILIIRRLHKVLRPFLL
RRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMN
TIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNH
RVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTR
AGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA
AKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARRE
EEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRG
SRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPVKEDVEKAKKR
RGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKDLPEYYELIRK
PVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQK
IAKEEESEEESNEEEEEDDEEESESEAKSVKVKIKLNKKEEKGRDTGKGKKRPNRGKAKP
VVSDFDSDEEQEENEQSEASGTDNE*
MSMv4 transcript
MSTPTDPAAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPLSTM
GSADFPQEGMHQLHKPMDGIHDKGIVEDVHCGSMKGTSMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPISGGGPTPPQMPPSQPGALIPGDPQAMNQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQQQQQQQQQQQQQQQQPQQQQQ
QPQQPQQQAQAQPQQQQQQPQQPALVSYNRPSGPGQELLLSGQSTPQKLSAPAPSGRPSP
APQAAVQPTATAVPGPSVQQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYR
LQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETA
LNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSV
AGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYL
LQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGEPALGPDGEPIDESSQ
MSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESESDYEEEDEEE
ESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAIS
ERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEH
KRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTT
YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVDLNEEETILIIRRLHKVLRPFLL
RRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMN
TIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNH
RVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTR
AGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA
AKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARRE
EEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRG
SRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPVKEDVEKAKKR
RGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKDLPEYYELIRK
PVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQK
IAKEEESEEESNEEEEEDDEEESESEAKSVKVKIKLNKKEEKGRDTGKGKKRPNRGKAKP
VVSDFDSDEEQEENEQSEASGTDNE*
homology99.80 (1526 / 1526)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Smarca2 (ENSMUSG00000024921)
Transcript ID ENSMUST00000176769
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ACTCTAAGAAGTATCAAGACAAGAACTTATCTAATAATTGTGTCTGAATC
TATTTGAGCCTATATTGTATGATCCCTGTAGCTTGCTTGCTCTCTCTCTCTCTCTCTCTC
TCCCTCTCTCTCTCTCCCCTTTCTCTCTCTCCCTCCCTCTCCCCCTCTCCTTCCCTCTCT
CCCTCTCCCCCTTCCCCTCCCCTTTTCCCCTCCCCTTCCCTCTCCCCTCCCACATTTCCT
CTCCCTCTCTCTGTTTTGTTGTTGTTTTGTTTTTGAGGCAGGGTTTCTCTGCGTAGTGCT
GGTTGTCCTGGAACTTGCTCTGTCCACCAGGCTGGCTTGGACCTCACAGAGCTCCTCCTG
CTTCTGCCTCCCAAGTGCTAGGAGGCACCTATGTGCCACCCTGTGTGTTATTTTTCTTCC
TTTTCTATAATTGAGACTTCTCTTTTTATTATCAATTGATGGACTTATTTTTCCCCCTTT
TAGCTATCTAGAAATCTTGGTGAAGTTTTGATTGCCTGTTGGCTTGTGAAAATGAGTCTT
GGTTGGATACTTATTTGCAAATGGTTTTCCAGTCCAGTGGTTTGGGGGAGTGGGGGCTTA
ATGACTTCTGAGGTGTCTAAGCCAGCCTATAACAGAGAGTATCTGTTGTGTTTAGTAGTA
AATTTCAGACTTGTTTAGATTCTGCTTATGTGTTAAATTTCAGTTGCTTCAGTGAGTGTC
TCTATATCCAGGGTGATTTATCATTTGGGGGGAATCACTTAAAGTATGTGTTTTTTAAAA
CAAGTGGTCTTCATAAAATCTGAGCCCAGGGTTATATATCACATTCATTCAAACATCTGG
AAGAGGCCAGGGAGTTCTGTTTGATGTTAGTTACAGAAATGGCACCATCAGATTTTAACA
ACTGTTTTATTTGGACCTTAACATCATGTTTAAAACATTTCTTTCTTTCTTTTTCTTCCT
GCTCTCCAACTTAGTGTCACTCTGCTAACTGGCAGAGCCAGGAGACCTAG
1 EXON 1 26,619,720 26,619,944 - 0 225
ATGTCCACACCCACAGACCCAGCAGCAATGCCCCATCCTGGGCCCTCCCCGGGGCCTGGA
CCCTCTCCTGGACCAATTCTGGGGCCTAGTCCAGGACCAGGACCATCCCCAGGTTCTGTG
CACAGCATGATGGGTCCTAGTCCCGGACCTCCCAGCGTCTCACATCCTCTGTCAACGATG
GGCTCTGCAGACTTCCCACAGGAAGGCATGCACCAATTACATAAG
INTRON 1 - 2 26,619,945 26,623,880 3,936
GTAAGAGTCTGTGCCCTCTCCCCCA..........AATGGATACCCTTTACATGTTTCAG
2 EXON 2 26,623,881 26,624,010 0 1 130
CCCATGGATGGGATACATGACAAAGGGATTGTAGAAGATGTCCACTGTGGATCCATGAAG
GGCACCAGCATGCGCCCCCCACACCCAGGAATGGGCCCTCCACAGAGCCCCATGGACCAG
CACAGCCAAG
INTRON 2 - 3 26,624,011 26,630,669 6,659
GTTGGTGGCCACTGCACATTAGATT..........CTGTGATATTATGTTTTTATTTTAG
3 EXON 3 26,630,670 26,631,131 1 1 462
GTTATATGTCACCACATCCGTCTCCTCTGGGAGCCCCGGAGCACGTCTCCAGCCCTATAT
CTGGAGGAGGCCCAACCCCACCCCAGATGCCACCGAGCCAGCCAGGGGCACTCATCCCAG
GAGATCCGCAGGCCATGAACCAGCCTAACAGAGGTCCCTCGCCTTTCAGTCCTGTGCAGC
TGCATCAGCTTCGAGCTCAGATTTTAGCTTACAAAATGTTGGCCAGGGGCCAGCCTCTCC
CTGAAACTCTGCAGCTGGCAGTCCAGGGAAAAAGGACCTTGCCTGGCATGCAGCAGCAGC
AGCAGCAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCAGCAAC
AACAGCAGCCCCAGCAGCCTCAGCAGCAGGCTCAGGCACAGCCCCAGCAGCAGCAGCAAC
AGCCGCAGCAGCCAGCTCTTGTTAGCTATAATCGACCATCTG
INTRON 3 - 4 26,631,132 26,640,387 9,256
GTAGGTTAATACGCAACCAAATGAA..........TGCTTATGTCCCTTTTGTCTCACAG
4 EXON 4 26,640,388 26,640,649 1 2 262
GCCCCGGGCAGGAGCTGCTACTGAGTGGCCAGAGCACTCCGCAGAAGCTGTCAGCACCGG
CACCAAGCGGCCGACCTTCACCGGCACCCCAGGCCGCAGTCCAGCCCACGGCCACAGCGG
TGCCCGGGCCCTCCGTGCAGCAGCCCGCCCCAGGGCAGCCGTCTCCGGTCCTACAGCTGC
AACAGAAGCAGAGCCGCATCAGCCCCATCCAGAAACCGCAAGGCCTGGACCCGGTGGAGA
TCCTGCAGGAACGAGAGTACAG
INTRON 4 - 5 26,640,650 26,647,020 6,371
GTAGCGCCAGGCCATTCCCAGGACC..........TGTCTTCTTTCTTTTTTCTTTCTAG
5 EXON 5 26,647,021 26,647,147 2 0 127
ACTTCAAGCTCGCATCGCTCATAGGATACAAGAACTGGAAAGTCTGCCTGGTTCCTTGCC
ACCAGATTTACGCACCAAAGCAACCGTGGAACTGAAAGCACTTCGCTTACTCAACTTCCA
ACGTCAG
INTRON 5 - 6 26,647,148 26,648,983 1,836
GTAATACCTTTTTCCCCCGTGATGT..........CTAACCACTATTCTCTTCCTGATAG
6 EXON 6 26,648,984 26,649,157 0 0 174
CTGAGACAGGAGGTGGTGGCCTGCATGCGGAGGGACACCACCCTGGAGACGGCCCTCAAC
TCCAAAGCATACAAGCGGAGCAAGCGCCAGACCCTGCGTGAGGCACGCATGACAGAGAAA
CTGGAGAAGCAGCAGAAGATAGAACAGGAGAGGAAACGCCGGCAGAAACACCAG
INTRON 6 - 7 26,649,158 26,651,548 2,391
GTCCTTAAGCCTGTGCCTGTTCTTC..........TTTCTCTCTCTTGTGTATCCTTTAG
7 EXON 7 26,651,549 26,651,722 0 0 174
GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTG
GCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGG
GAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGGATGCGGAGGCTGATG
INTRON 7 - 8 26,651,723 26,654,340 2,618
GTAAGGCGCCCCATGTGAGACTGAG..........CTGTTGTCCTCCTCTTCCCAATCAG
8 EXON 8 26,654,341 26,654,511 0 0 171
GCTGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCC
TACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCAC
AAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG
INTRON 8 - 9 26,654,512 26,664,050 9,539
GTGAGCTCCAAAGACTGGTTTTAGA..........AACACTTGACTGTGTTGTTTTGCAG
9 EXON 9 26,664,051 26,664,104 0 0 54
AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG
INTRON 9 - 10 26,664,105 26,668,752 4,648
GTAAGGGCCATGCTGGTCACCCCTG..........CTTGATTTCTCTTTGCTCTTTCTAG
10 EXON 10 26,668,753 26,668,883 0 2 131
CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACT
GGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAG
ATGAATCCTGG
INTRON 10 - 11 26,668,884 26,669,113 230
GTATGGTGTTGAAACCGTTGCTGGG..........CATCTCGTCTCCTCCTTTTCCCCAG
11 EXON 11 26,669,114 26,669,171 2 0 58
TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG
INTRON 11 - 12 26,669,172 26,671,083 1,912
GTATGTGGACATCTGTCACTTTGTG..........GGCTGTCTTTCTGGTCTTCCTCCAG
12 EXON 12 26,671,084 26,671,184 0 2 101
GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAAC
AGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA
INTRON 12 - 13 26,671,185 26,672,698 1,514
GTATGTAGGCCTTTCATGACAAGGG..........GGACTTTCCACTTTGTCTTCTTCAG
13 EXON 13 26,672,699 26,672,846 2 0 148
GACTGCGAAGCAGGACGTGGACGACGAATACAGCATGCAGTACAGTGCCAGAGGCTCTCA
GTCCTACTACACGGTGGCTCACGCTATCTCTGAGAGGGTGGAGAAGCAGTCTGCCCTCCT
CATTAACGGCACCCTAAAGCATTACCAG
INTRON 13 - 14 26,672,847 26,676,633 3,787
GTAACTGGTGCGTTTGTGTCCCCGC..........TTGAAACAATTACTCTTCATTTCAG
14 EXON 14 26,676,634 26,676,797 0 2 164
CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCT
GATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAG
CACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC
INTRON 14 - 15 26,676,798 26,678,315 1,518
GTAAGTACAGCCATTTGTCCCTGCA..........TTTTTGTTGTTGTTTCTTTTTGTAG
15 EXON 15 26,678,316 26,678,382 2 0 67
GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTC
TTACAAG
INTRON 15 - 16 26,678,383 26,679,073 691
GTTTGGAGCATTGTGTTTCTATATA..........TCGATGTATTTTTCTTCCCATTCAG
16 EXON 16 26,679,074 26,679,184 0 0 111
GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTC
CTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG
INTRON 16 - 17 26,679,185 26,681,870 2,686
GTATGGTTTTTTTTTCTTTAATTTT..........CTTGGTGCCTTCTTTTGTCCTGCAG
17 EXON 17 26,681,871 26,681,939 0 0 69
ATTCGGTGGAAGTACATGATCGTGGACGAAGGCCATCGGATGAAGAATCACCACTGCAAG
CTAACCCAG
INTRON 17 - 18 26,681,940 26,683,808 1,869
GTCCTGAACACACACTATGTGGCCC..........GAATTCACATAGGTTCGTTTTGCAG
18 EXON 18 26,683,809 26,683,922 0 0 114
GTGGACCTGAACGAAGAAGAAACGATTTTGATCATCAGGCGTCTACACAAGGTGTTGAGA
CCCTTTTTACTGAGGAGGCTGAAGAAAGAGGTTGAGTCTCAGCTTCCGGAAAAG
INTRON 18 - 19 26,683,923 26,691,344 7,422
GTGAGTCACAGATAAGAGTCGTGGG..........ACTTACCCCTGTTCTCTGTCCCCAG
19 EXON 19 26,691,345 26,691,452 0 0 108
GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATG
CAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG
INTRON 19 - 20 26,691,453 26,692,180 728
GTACATTTAGAAAGTAGGAGACTCA..........GTTCTTTATTGCACTTTTTGCTCAG
20 EXON 20 26,692,181 26,692,267 0 0 87
GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAAC
CACCCATATATGTTTCAGCACATTGAG
INTRON 20 - 21 26,692,268 26,696,175 3,908
GTGAGTCTGCAGCTTGTACTTCGCT..........AATTGCTTTCTTCTCTCTTTTTAAG
21 EXON 21 26,696,176 26,696,222 0 2 47
GAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTCATCAATGG
INTRON 21 - 22 26,696,223 26,698,345 2,123
GTAAATCCCCCCCCTTTTTTTCCTC..........TCTTGTTTTGCATTTTCGGGTTCAG
22 EXON 22 26,698,346 26,698,512 2 1 167
GGCTGAGCTGTATCGGGCCTCGGGAAAGTTTGAGCTGCTTGATCGTATTCTGCCCAAATT
GAGAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATTAT
GGAGGATTACTTTGCTTTTCGGAACTTCCTGTACCTGCGCCTTGACG
INTRON 22 - 23 26,698,513 26,706,067 7,555
GTAAGTGCCAGAGACACCGGACTCA..........TTCTTTTTCTCTTATTCCCCCTCAG
23 EXON 23 26,706,068 26,706,231 1 0 164
GCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAAGAAATTCAATGAACCTGGGTCCC
AGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGG
CAGACACGGTGGTCATATTTGACAGCGACTGGAATCCTCACCAG
INTRON 23 - 24 26,706,232 26,710,457 4,226
GTGCGTGGCTTGGCGCTGAGAGGAA..........CACAGCATCTTGTTCTCAAAACCAG
24 EXON 24 26,710,458 26,710,685 0 0 228
GATCTGCAGGCCCAAGACCGAGCTCACCGAATTGGCCAACAAAACGAGGTCCGGGTGCTG
AGGCTTTGCACCGTCAACAGTGTGGAGGAAAAGATTCTCGCGGCTGCCAAGTACAAGCTG
AACGTGGATCAGAAGGTTATCCAAGCAGGCATGTTTGACCAGAAGTCATCCAGCCACGAG
CGGAGGGCCTTCCTGCAGGCCATTCTGGAGCACGAGGAGGAGAATGAG
INTRON 24 - 25 26,710,686 26,716,114 5,429
GTAATACACAAAGCCAGACTTGGGA..........CTGATCATTCTGTTGCTGAATCCAG
25 EXON 25 26,716,115 26,716,192 0 0 78
GAAGAAGATGAGGTACCAGACGACGAGACCCTGAACCAGATGATTGCTCGCCGGGAGGAA
GAGTTTGATCTTTTTATG
INTRON 25 - 26 26,716,193 26,720,728 4,536
GTAATGTTGCAGGAATTATGGGAAA..........GTGACACTATTGTCCGTGTTTCCAG
26 EXON 26 26,720,729 26,720,947 0 0 219
CGCATGGACATGGACCGGCGGAGGGAGGATGCCCGGAACCCGAAGCGCAAACCCCGCTTG
ATGGAGGAAGATGAGCTGCCCTCCTGGATTATCAAGGATGACGCCGAAGTGGAAAGGCTC
ACCTGTGAAGAAGAGGAGGAGAAGATATTTGGGAGGGGCTCTCGCCAGCGCCGGGATGTG
GACTACAGCGATGCCCTCACCGAGAAGCAATGGCTCAGG
INTRON 26 - 27 26,720,948 26,751,823 30,876
GTAGGTGTGGCTTTTTAAACTTAAC..........TCCCTCCTTTCTTTCCTGCTTACAG
27 EXON 27 26,751,824 26,752,041 0 2 218
GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAA
AGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGA
AGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATG
AACGCCATCATTGATACTGTGATAAACTACAAAGACAG
INTRON 27 - 28 26,752,042 26,770,937 18,896
GTGAGCCCCTGGCTCCTTCCTCTCC..........TCTGTTTGTCTCCCCCATCCTGCAG
28 EXON 28 26,770,938 26,771,043 2 0 106
TTCAGGGCGACAGCTCAGTGAAGTCTTCATTCAGTTACCTTCCAGGAAAGACTTACCAGA
ATACTATGAATTAATTAGGAAGCCAGTGGATTTCAAAAAGATAAAG
INTRON 28 - 29 26,771,044 26,771,507 464
GTAGATACTCTGTTCCCTGTTGTTC..........TGTTTTCACCCGAAATTCCCCTCAG
29 EXON 29 26,771,508 26,771,609 0 0 102
GAGCGAATCCGTAATCATAAGTATCGGAGCCTGGGAGACCTGGAGAAAGACGTCATGCTT
CTCTGTCACAACGCACAGACATTCAACTTGGAAGGATCCCAG
INTRON 29 - 30 26,771,610 26,774,172 2,563
GTACGTGTCAAGTTGTCGGAGACGT..........AACAGCTGACACTTTGGCCATTTAG
30 EXON 30 26,774,173 26,774,305 0 1 133
ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCC
AAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAG
TCAGAGTCAGAGG
INTRON 30 - 31 26,774,306 26,776,100 1,795
GTAAGTCCCATGCACCTGGCCCTTC..........GGGGTCTCTCTTGTGACTGCTCTAG
31 EXON 31 26,776,101 26,776,243 1 0 143
CGAAATCTGTGAAGGTGAAAATCAAGCTGAATAAAAAGGAAGAGAAAGGCCGGGACACAG
GGAAGGGCAAGAAGCGGCCAAACCGAGGCAAAGCCAAACCTGTCGTGAGCGATTTTGACA
GTGACGAGGAGCAGGAAGAGAAC
INTRON 31 - 32 26,776,244 26,777,334 1,091
GTGAGTGTACAGGCCGGGGCAGAGG..........CAGTCTGTCTACCTCTTTCTTTTAG
32 EXON 32 26,777,335 26,777,370 0 - 36
GAACAGTCAGAAGCAAGTGGAACTGATAACGAGTGA
3' upstream sequence
CCATCCTGGACGTGAGCTTCCCGCGGTGGCAGAACCGAATGCTTTCTTCCCCCTCTCCTT
CCTCCCCAGTGAGTTCACTTGCCATTCGGGCACACTGGGTTATTTCTCCGTCCTCATTGT
CATCTAGAACTAGCTTTAGGGTAGTGCCAGACAAACATATGATATCATGGTGTAAAAAAA
GAAACACACGCGTGCAGACACACTACACACACACACACACACACACACACACACACACAC
ACATATTTGTAACATATTGTGACCAAATGGGCCTCAAAGATTCAAAGATTAAAAACAAAA
AGCTTTTGATGGAAAAGATGTGGGTGGATAGTATATTTCTACAGGTGGGTCAGGTTTGGT
AGCAGTTTGATGTGCTGGGTTCCGTCATCTGTTCTGATGAGAAGATTTTTATCTTCTGCA
GTGCTGATGGCCGGGAGGAACCATTCAAAGCCACTGGTTATTTTGTTTTTCATCAGGCGA
TTTTCAAGATTTTCATTTGTTTCAGTATTGTTGGTTTTCTCTTTTCTCTTTTTTACACTG
TGGTACATATAAGCAACTTGACTAGTGACAAATGTACAGTAGTTAGATATCACCTACATA
TACATTTTTCCATTTTATGCTCTATGATCTGAAGAACAAAAAAAAAAGCTTTTTGACTTG
TATAAGATTTATGTCTACTGTAAACATTGCGGAATTTTTTTTTGTTCTTGTTTTATTGAC
AATGCTATTGAGTATTACAGTGTCTAGAGTACCCTGGATGGCTTCTCTTGTCCACCCGAT
CTCCCGTGTTACCAATGTGTATGGTCTCCTTCTCCCGAAAGTGTACTTAATCTTTGCTTT
CTTTGCACAATGTCTTTGGTTGCAAGTCATACGCCTGAGGCAAATAAAATTCCAGTAATT
TCCAAGAATGTGGTGTTGGTACTTTCCTAATAAACCGATAACTTACCTTGACTCTGTCGC
CTTTTCTTTTATGAGTGCTAGGGCACTAAACCTCTGGGTG..........

Sequence Detail Report

Gene Symbol (Gene ID) Smarca2 (ENSMUSG00000024921)
Transcript ID ENSMUST00000176769
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 1526 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information