MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Fbxw17 (ENSMUSG00000037816)

Cross Reference

EMBL	AC165366
GO	GO:0003674, GO:0005575, GO:0031146
goslim_goa	GO:0003674, GO:0005575, GO:0008150, ...show all
MGI_trans_name	Fbxw17-012
OTTP	OTTMUSP00000061292
OTTT	OTTMUST00000110009
UniParc	UPI0002467799
Uniprot/SPTREMBL	H3BLQ7
Vega_transcript	Fbxw17-012, OTTMUST00000110009
Vega_translation	214452, OTTMUSP00000061292

Definition

protein_id:ENSMUSP00000135878
translation:

LKATKSRDRLSILAQQLASFHLPDTMTPHLMQGHGSQTILLTSRIQTVSSLLPWTCPCVS
MCGIKRTHHLSSRAVTICSGDLTDGPVDSPT

Chromosome

Length
Position(start - end)

1,602
50,431,711 - 50,433,314

Orient to Chromosome

plus

Link

Location : (13:50431711-50433314)
/

Detail Map

name	Gm8739 (ENSMUSG00000101136)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm8739 note : predicted gene 8739 [Source:MGI Symbol;Acc:MGI:3644775]

name	Fbxw17 (ENSMUSG00000037816)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Fbxw17 note : F-box and WD-40 domain protein 17 [Source:MGI Symbol;Acc:MGI:1923584]

name	Fbxw17 (ENSMUSG00000037816)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000046974

name	Fbxw17 (ENSMUSG00000037816)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000176479

name	Fbxw17 (ENSMUSG00000037816)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000176772

name	Fbxw17 (ENSMUSG00000037816)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000176543

name	Fbxw17 (ENSMUSG00000037816) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS36661.1 RefSeq_peptide:NP_780610 RefSeq_mRNA:NM_175401.3 RefSeq_mRNA_predicted:XM_006516827.2 RefSeq_peptide_predicted:XP_006516890.1 RefSeq_peptide_predicted:XP_006516892.1 Vega_transcript:Fbxw17-001 Vega_transcript:OTTMUST00000109999 Uniprot/SPTREMBL:Q8CFE8 UCSC:uc007qkl.1 EMBL:AC165366 EMBL:BC040428 GO:GO:0003674 GO:GO:0005575 GO:GO:0031146 MGI_trans_name:Fbxw17-001 Vega_translation:214449 Vega_translation:OTTMUSP00000061289 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0009056 protein_id:AAH40428.1 OTTP:OTTMUSP00000061289 OTTT:OTTMUST00000109999 UniParc:UPI00000E8FED
definition	note : transcript_id=ENSMUST00000046974 protein_id : ENSMUSP00000041750 translation : MAPQLGPHELQHIFSFLEARDLLRAAQVNKVWNEVSMTKELWRQLCLRRWASCKAFPVVVGTQTWKKYYFCRSELEFRMESGRPQDFICKAISGHTGMIDQLAYVSPHEYRFDEGARSVVCTVSSDCTVRAWDLQEGSEIWSSAVQPAPLVNVVAYPQLQLVVTVDIQGLIMGWKAKTGSEWAFFSLPASCSSMEACDHPEGPFLLVACDEGTLYTMTVPQLQVVSRVPTFPHSSVSLTCSPDTQWVFVSAQGSDLGPKVFYTQPLLHPSEDRLPVSTTLPIRLSSRACWAPDEAARLMVIHRDDGGVHLVITTFELKATKSRDRLSILAQQLASFHLPDTMTPHLMQGHGSQTILLTSRSELVLFTIHGLQLMAFQDHQRPITSMWVDPDRVITAALDLSLRVYVWNKKNTSPVLKSCYHLLGGSHRWASGFTHVKSDSRSIAGVEARSTGTSILRSYCFKVKLD

name	Fbxw17 (ENSMUSG00000037816) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Fbxw17-012 Vega_transcript:OTTMUST00000110009 Uniprot/SPTREMBL:H3BLQ7 EMBL:AC165366 GO:GO:0003674 GO:GO:0005575 GO:GO:0031146 MGI_trans_name:Fbxw17-012 Vega_translation:214452 Vega_translation:OTTMUSP00000061292 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0009056 OTTP:OTTMUSP00000061292 OTTT:OTTMUST00000110009 UniParc:UPI0002467799
definition	note : transcript_id=ENSMUST00000176772 protein_id : ENSMUSP00000135878 translation : LKATKSRDRLSILAQQLASFHLPDTMTPHLMQGHGSQTILLTSRIQTVSSLLPWTCPCVSMCGIKRTHHLSSRAVTICSGDLTDGPVDSPT

name	Fbxw17 (ENSMUSG00000037816) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Fbxw17-013 Vega_transcript:OTTMUST00000110010 Uniprot/SPTREMBL:H3BJ96 EMBL:AC165366 GO:GO:0003674 GO:GO:0005575 GO:GO:0031146 MGI_trans_name:Fbxw17-013 Vega_translation:214453 Vega_translation:OTTMUSP00000061293 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0008150 goslim_goa:GO:0009056 OTTP:OTTMUSP00000061293 OTTT:OTTMUST00000110010 UniParc:UPI00001E820E
definition	note : transcript_id=ENSMUST00000176543 protein_id : ENSMUSP00000134899 translation : SFHLPDTMTPHLMQGHGSQTILLTSSCSSLDFISRIQTVSSLLPWTCPCVSMCGIKRTHHLSSRAVTICSGDLTDGPVDSPT

name
type	STS
link
xref	UniSTS_NUM:180531 UniSTS:C85886 WI_MRC-RH:302929
definition	note : map_weight=1 standard_name : C85886

name
type	misc_feature
link
xref
definition	note : contig AC165366.2 65013..241514(1)

name	Gm8739 (ENSMUSG00000101136)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000125135 Vega_transcript:OTTMUST00000125135 Clone_based_vega_transcript:RP23-76L8.1-001 MGI_trans_name:Gm8739-001 OTTT:OTTMUST00000125135 RNACentral:URS0000773278
definition	note : antisense note : transcript_id=ENSMUST00000185962

name	Fbxw17 (ENSMUSG00000037816)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000110001 Vega_transcript:OTTMUST00000110001 UCSC:uc007qkm.1 MGI_trans_name:Fbxw17-008 OTTT:OTTMUST00000110001
definition	note : processed_transcript note : transcript_id=ENSMUST00000176424

name	Fbxw17 (ENSMUSG00000037816)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000110006 Vega_transcript:OTTMUST00000110006 MGI_trans_name:Fbxw17-009 OTTT:OTTMUST00000110006
definition	note : retained_intron note : transcript_id=ENSMUST00000176508

name	Fbxw17 (ENSMUSG00000037816)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000110005 Vega_transcript:OTTMUST00000110005 MGI_trans_name:Fbxw17-003 OTTT:OTTMUST00000110005
definition	note : retained_intron note : transcript_id=ENSMUST00000177541

name	Fbxw17 (ENSMUSG00000037816)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000110007 Vega_transcript:OTTMUST00000110007 MGI_trans_name:Fbxw17-010 OTTT:OTTMUST00000110007
definition	note : retained_intron note : transcript_id=ENSMUST00000176470

name	Fbxw17 (ENSMUSG00000037816)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000110011 Vega_transcript:OTTMUST00000110011 MGI_trans_name:Fbxw17-015 OTTT:OTTMUST00000110011
definition	note : retained_intron note : transcript_id=ENSMUST00000177233

name	Fbxw17 (ENSMUSG00000037816)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000110008 Vega_transcript:OTTMUST00000110008 MGI_trans_name:Fbxw17-014 OTTT:OTTMUST00000110008
definition	note : retained_intron note : transcript_id=ENSMUST00000176298

Polymorphisms
Exon
Sequence

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Fbxw17 (ENSMUSG00000037816)
Transcript ID	ENSMUST00000176772

Reports
substitution
cSNPs	0
Insertion	6
Deletion	5
SNPs	-1kb 50426831(c.-4880G>A), 50426881(c.-4830G>A), 50426948(c.-4763C>T), 50427023(c.-4688G>A), 50427028(c.-4683A>C), 50427223(c.-4488T>C), 50427257(c.-4454A>T), 50427439(c.-4272T>C), 50427490(c.-4221C>T), 50427522(c.-4189T>G), 50427559(c.-4152T>G), 50427669(c.-4042G>A), 50427733(c.-3978C>A), 50427751(c.-3960G>C), 50427763(c.-3948C>G), 50427810(c.-3901G>A), 50427984(c.-3727T>C), 50428077(c.-3634T>G), 50428185(c.-3526C>A), 50428284(c.-3427G>A), 50428290(c.-3421C>G), 50428587(c.-3124C>G), 50428614(c.-3097A>G), 50428652(c.-3059A>T), 50428666(c.-3045G>A), 50428695(c.-3016T>C), 50428765(c.-2946G>A), 50428797(c.-2914A>T), 50428839(c.-2872G>A), 50428907(c.-2804G>T), 50428941(c.-2770T>C), 50428992(c.-2719T>C), 50428993(c.-2718T>C), 50429138(c.-2573A>G), 50429171(c.-2540A>G), 50429193(c.-2518T>C), 50429254(c.-2457T>C), 50429265(c.-2446T>C), 50429350(c.-2361C>T), 50429414(c.-2297T>C), 50429418(c.-2293G>A), 50429451(c.-2260G>A), 50429572(c.-2139T>A), 50429702(c.-2009G>A), 50429734(c.-1977C>A), 50429828(c.-1883G>A), 50429978(c.-1733A>G), 50430091(c.-1620A>T), 50430092(c.-1619T>A), 50430121(c.-1590A>C), 50430154(c.-1557G>A), 50430376(c.-1335A>G), 50430410(c.-1301C>T), 50430519(c.-1192A>G), 50430639(c.-1072G>A), 50430666(c.-1045T>C), 50430672(c.-1039G>A), 50430708(c.-1003A>G), 50430738(c.-973G>A), 50430742(c.-969C>T), 50430821(c.-890G>A), 50430866(c.-845A>G), 50430920(c.-791C>A), 50430938(c.-773C>A), 50430995(c.-716T>G), 50431030(c.-681T>C), 50431031(c.-680G>T), 50431103(c.-608C>T), 50431157(c.-554T>C), 50431525(c.-186T>C), 50431567(c.-144C>T), 50431602(c.-109T>C), 5'UTR CDS 3'UTR INTRON 50432659(c.259+104A>G), 50432879(c.259+324C>T), 50433141(c.260-157G>C), 50433226(c.260-72A>T), 50433258(c.260-40G>A), +1kb 50435121(c.1807C>T), 50436031(c.2717C>A), 50436682(c.3368G>T), 50436725(c.3411G>A), 50437008(c.3694G>C), 50437071(c.3757G>A), 50437490(c.4176G>A), 50437867(c.4553T>C), 50438614(c.*5300T>C),
Insertions	-1kb 50428375 (c.-3336_-3335insCCA), 50429088 (c.-2623_-2622insTTTT), 50429093 (c.-2621_-2618dupTTTT), 50430054 (c.-1657_-1656insCTC), 5'UTR CDS 3'UTR 50433580 (c.270_271insAAAACAAA), INTRON +1kb 50437815 (c.4501_4502insA),
Deletions	-1kb 50428051 (c.-3659_-3654delGCATGG), 50428739 (c.-2971delA), 50429044 (c.-2666delC), 50429431 (c.-2279_-2278delCT), 50431239 (c.-471delA), 5'UTR CDS 3'UTR INTRON +1kb
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000176772)	LKATKSRDRLSILAQQLASFHLPDTMTPHLMQGHGSQTILLTSRIQTVSSLLPWTCPCVS MCGIKRTHHLSSRAVTICSGDLTDGPVDSPT*
MSMv4 transcript	LKATKSRDRLSILAQQLASFHLPDTMTPHLMQGHGSQTILLTSRIQTVSSLLPWTCPCVS MCGIKRTHHLSSRAVTICSGDLTDGPVDSPT*
homology	100.00 (92 / 92)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Fbxw17 (ENSMUSG00000037816)
Transcript ID	ENSMUST00000176772

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TGATAACATTCGCTCAGACTGGGAGGAAGAGTCATGCAGCTGGAGAAGGA CCTTTTTCACCTGGGGAGAAATAACGTATTCCGCTATCGGAGGGTAGTGGGTTTTTGCAA ATCAGTCCCAGCTGTCTGGGAGCACTTAATTGCTTCTTTCCCATAGCTCAAGAATGGGGG CCTTATCACTTCAAGGACATGAATTTCTGCCTCCTTCAAAGGCAGGAGCCATCTGCAACA GGGGAATGCTGGCTGTTTGATAACACAGAGGGGAGTGCAAGTCTCAGCACCAGGGGTTAA TGCTGAGAGTGGAAACTAGGATGGGCTGCCTTTCGTCTGCCCTCTTCATAGGCAGGAGGC ATCTGCACAGGGCAAGGGAAAGGAAGTGCTGGCCATTTAGCTTAGCACAGGGACAAGAGA GTGCGAGTGTGGGATTTGATGCCAAGGATTAATTAACGCAGAGATGGGGGCAGGTTACCT CTTCAATGTCCAGTCACTTGCCAGAGGTGAAACCCTTACTGAGTGCCAGGACCTAAACTA AAAAAGTTAGAGCATAGAAAGAAGAGCTAGTAGAACACAGGAAGGAGATCTGAGAGCTAG GGAAGAAGATCATTAGAGAATAGCAGTTTGGTACAGAGGGCATAGGATGCTGTAGCCCAC AGCCTAGAAGGGGGACATGAAGATGAGCTCGATTGCCCAGTTAGGCCTAGTATTGCATTA TGTGGGCAGCCAGCTGTCCAGGCAGTCCTACCAGAGGCTGAAGTCAGCCTGGGGCTGGAG GGTTTTGGGAACTCTCAGGTTCCTCACCACACTGTGACCATATACGGGTGTTTCAACAGG TGTTCTACACTCAGCCCTTGCTGCACTCATCAGAAGACAGACTTCCTGTCTCCACTACCC TCCCCATCAGGCTGAGCTCCAGAGCCTGCTGGGCTCCGGATGAGGCAGCCAGACTGATGG TGATACACAGAGATGACGGTGGCGTGCATCTGGTTATCACTACCTTCGAG
1	EXON 1	50,431,711	50,431,750	-	1	40	TTAAAGGCCACCAAGTCCAGGGACAGATTGAGCATCCTTG
	INTRON 1 - 2	50,431,751	50,432,170			420	GTAAGGTCCCTGTGCTGGCCACAGC..........ACCTGTATGCTTTTGTTCTCCCAAG
2	EXON 2	50,432,171	50,432,261	1	2	91	CACAGCAGCTGGCCAGCTTCCACCTGCCGGACACTATGACTCCTCACCTCATGCAGGGCC ATGGCTCCCAAACGATCCTGCTCACCTCCAG
	INTRON 2 - 3	50,432,262	50,432,427			166	GTCAGAGCTGGTGCTCTTCACCATA..........GTAGCTCACTTGACTTCATTTCAAG
3	EXON 3	50,432,428	50,432,555	2	1	128	GATCCAGACCGTGTCATCACTGCTGCCTTGGACCTGTCCTTGCGTGTCTATGTGTGGAAT AAAAAGAACACATCACCTGTCCTCAAGAGCTGTTACCATTTGCTCGGGGGATCTCACAGA TGGGCCAG
	INTRON 3 - 4	50,432,556	50,433,297			742	GTAATTTAATTGACTGTTCTCCAGC..........CCTGGCGTGTCCTCCTCCTTTGTAG
4	EXON 4	50,433,298	50,433,769	1	-	472	TGGATTCACCCACGTGAAGAGTGACAGCAGAAGCATTGCTGGGGTGGAAGCCAGAAGCAC TGGGACAAGTATTCTGAGGTCATATTGCTTCAAGGTTAAGCTTGACTAGACGCCACCAGT TGAAGATGCTCTGGCTTGGTGTGCGTGCAAAGTCCTTACCAAAGATGTTGTCAACTTTGG AAAAAAAACTAGCAAGATGCCTGCTTCCTAACAAAATGCCTGCTGCCTTCTCACAGAGAG CCGATGAAGTGGTTTCTGTCATCTTACATTTCACTGTCCTGCTCAAACAAGGGAGAATAA GTCCCCTCTTCAGGCGCTTTCCCAGGTGGCACGGTTTCCCAGGTGGTCACAGACAGAGTG GACTGTTTGTGGTAGTGCTGAATTTATAGCCTGCTCGTTTGCAGTGTCCAGATGGCAACA GAGTTGTTTTTGTTACCAAGAATGTAATTAAAATATTTTTATTTGCCTGTGC
	3' upstream sequence						TGTAGAGACACATTCCTGCATGAACTTTGCTGTCATTGAGATAAATTCTGTGAGATCCAT CTCAAAAAAACTCAAGGTCACCAACAAAGCAGAGTGATGGTGGCAGCTTTAGAGTTGGCC AGCATGGGGGCCCTGGCTGCATCAGTGGGTGCCCACTAGGCTTCTTAATTGCAAGCAGTA TGTGCTGGCAGTCACCCACTGAAACCAAAAATGGACCTTGGTGGATGTCAATAGGGCACC TCTCTTTTAAAGAGAAGGGTGGAGGGCGAGAATTGAGCCAGGTAGCATGGCAGCAGAGCA CAGCCAGGCTCTGTTCTGCCTCTGCTCACTTCTGGCACCCTGCTTCTTATGGTAATCATT TAAAAACAGTGCTGTGTATCATAGATGCCTGTGGTCATGTAGGACATAGATGGTGCCGTG AGAGCGTCTACCCTGAGGCTGTCAGTGGGAGTCCTAACCTAGCTCCACCACAGTTATATA TGCTGTTCAATGACTCTGAGAATGAGGGTAAGCAGGACAGAGCCATCCCAAGAGAGCCAT GGAGAAGGGGGTGGAGAACAATGAGAAAGAGAAACCAGCAGACATGAATATGGTGGTCCA GCAAGAAAGACAACTGTCATGTTCTAAAGATGACAGGAAGGATCAGATCAGCCAAAGATG AGGATTTCTGCTGGAGATGTCATGGGCATGTTCCATTTGCAGGTCATATTAAGAGCAGCA TCCTCAAGACACAGATGAATTCCTGTTAAAATCCCTCCTTGGGAAAGTGTGGGCTCTGAC ATTAGAGCGATGAAAGCTGGGCCTAGTGGCCCTACTCAAGAACACAAACAGCTCTAGGGA CCTTGCTCTGGAGTTGTGAGCCAGCTTGGTAAGGGAAGTCTTATTGGAGACATAGGAAGC TCAGGTACCAAGGCTAGCTAGTTCATCTTGATGAATGTATTGATCTTGGGCGTGGTGCTT TGGGCCTCAAGAGGAGCCCTGGAGAAATTGCTACACACTC..........

Sequence Detail Report

Gene Symbol (Gene ID)	Fbxw17 (ENSMUSG00000037816)
Transcript ID	ENSMUST00000176772

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 92 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information