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Target CDS Information

Gene Symbol (Gene ID) Fbxw17 (ENSMUSG00000037816)
Cross Reference
EMBL AC165366
GO GO:0003674, GO:0005575, GO:0031146
goslim_goa GO:0003674, GO:0005575, GO:0008150, ...show all
MGI_trans_name Fbxw17-004
OTTP OTTMUSP00000061290
OTTT OTTMUST00000110000
UniParc UPI00001E820F
Uniprot/SPTREMBL H3BKU3
Vega_transcript Fbxw17-004, OTTMUST00000110000
Vega_translation 214450, OTTMUSP00000061290
Definition protein_id:ENSMUSP00000135671
translation:
MAPQLGPHELQHIFSFLEARDLLRAAQVNKVWNEVSMTKELWR

Chromosome 13
Length
Position(start - end)
1,982
50,417,898 - 50,419,881
Orient to Chromosome plus
Link Location : (13:50417898-50419881)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Fbxw17 (ENSMUSG00000037816)
Transcript ID ENSMUST00000176913
Reports
substitution
cSNPs0
Insertion7
Deletion11
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000176913)
MAPQLGPHELQHIFSFLEARDLLRAAQVNKVWNEVSMTKELWR*
MSMv4 transcript
MAPQLGPHELQHIFSFLEARDLLRAAQVNKVWNEVSMTKELWR*
homology100.00 (44 / 44)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Fbxw17 (ENSMUSG00000037816)
Transcript ID ENSMUST00000176913
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TATTGATTGCATGACCAAGAACAGGCTTGTGCCTCTGAAACGTTTCTTGG
CATCCAAGCTCAGGGGTGCAGACTTTTTAAAGGCAAAACTCACAAAGACCATAATTTACA
TCAAAGTCAAAATCAGATGAGGGTCAAGGAACCTTGACACGTTCATTACTGGCAAGGCAT
ACTGGTTATTTCAGACATAGTGTGTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTA
CTTATGTCTTTTAAATCTATTGTAGTTTACTTATTTTTGGCTAATATATCTGACCCAAGG
TCAAGGCCATGCAAATCTCAAATGTGTGGCCATTTTGTACTGAGCTATCCAAGCAAACAT
GAAATGGAGTCAAAACAAGATGATGCTCCCGTAATCATTTAAGAACCACACAGGTGTGGA
CCTGACTGGGGAAAATGTCTTCACCTGCACACCAGTGGCAGTAATGATGGTCGATGGGCA
AGGATGGGAGGTGTGGACTTGTAGCTGCCCTAACTCCTACAGGAGCACAGAAGAGTTCAT
TACAGAATCATAGTACCCAATACTTTCGCTCTTCTAAGGTTAAATTTATGTGTGCGTGGT
TTTAACAGCAGCTATAAATTGCAGTAAATATTAGAGGAAGCAATCGATTACAATACAAGA
TGCATGCCCCTACTCTTTGTCCTACCGCACAGCCCATTTCTGGAAAACACCAAATGTGTA
CATGTTGGCATGGTTGATAATAAATACAATGCAGAATCATAAGCAGGGAGGAGGCTGAAG
CCAGAACCCGGCAAGGAGCAACCAAGACTGATTGTGAGAGGAGAGGCAGAGAAAAAAACA
AGGTCAATATTCCAACTTCAGTGATCGCTAGGCCAGAGCAGGATCATGTCAAAAGCCAGC
AGCTGGAAATGACCAGCCTGGGGAGGCGAGCGCAGGAGCGGAAGTAACCGGCACAATTTT
CTCATGTGGGCGGGCTCATCTAACTGTGGAGGAAGCAGACGCACGGGGCT
1 EXON 1 50,417,881 50,417,987 - 0 107
AGGGCGTGGCAAGCGGGATGGCGCCGCAGCTTGGCCCGCACGAACTGCAGCACATCTTCT
CCTTCCTGGAGGCCCGGGACCTGCTGCGCGCTGCGCAGGTGAACAAG
INTRON 1 - 2 50,417,988 50,419,839 1,852
GTGAGGTCCTGGGCAGGGTCGCCCC..........CTGTCTTTCTCACTCCTTGTTCTAG
2 EXON 2 50,419,840 50,420,028 0 - 189
GTCTGGAATGAGGTTTCGATGACCAAGGAACTGTGGAGGTGAGTGAAGAAGAGCCAAGGG
TGTTCTGCAAAGGAGAGGCGCTCACCAGAAGTGGCTCCAGGTGCTCTCAGCACTTTTGCT
TCTATTGAAGTCCGAGAAGGATTATATCCCAGGTTCTTACCATGAGGAAACTTCTTTGTG
GTTAATAAT
INTRON 2 - 3 50,420,029 50,423,201 3,173
GTAAGACTTTGTATCAACAGGATTG..........CTAAGCTTGTGCGTCTGTGTTTCAG
3 EXON 3 50,423,202 50,423,362 - - 161
GCAGCTGTGTCTGAGGCGATGGGCCTCCTGCAAGGCCTTCCCAGTGGTCGTGGGCACGCA
AACATGGAAGAAGTACTATTTCTGCCGGTCTGAGCTAGAGTTCCGTATGGAATCTGGGCG
GCCACAGGATTTCATCTGCAAAGCTATTTCTGGGCACACAG
INTRON 3 - 4 50,423,363 50,423,751 389
GTATGGGCTGGAGAGTATAAGAGCT..........CCATCTATGTCTGTTTCCCTTCCAG
4 EXON 4 50,423,752 50,423,870 - - 119
GAATGATAGATCAGCTGGCCTACGTCTCACCCCATGAGTACCGCTTTGATGAAGGGGCAA
GGTCCGTGGTTTGCACTGTGTCTTCAGACTGTACTGTACGTGCCTGGGATCTGCAGGAG
INTRON 4 - 5 50,423,871 50,425,556 1,686
GTGAGCTGCCCGCTGGGGAGGGAAT..........GTTATGTTAATTTTGTTGTTGCCAG
5 EXON 5 50,425,557 50,425,656 - - 100
GGCTCAGAGATCTGGTCGAGTGCTGTGCAGCCTGCTCCTCTGGTGAATGTGGTGGCCTAT
CCTCAGCTGCAGCTGATTGTCACTGTGGACATACAGGGCT
3' upstream sequence
TGATCATGGGGTGGAAAGCAGAGACCGGGTCTGAGTGGGCCTCCTTCAGCTTGCCGGCCT
CCTGTTCTTCAATGGAGGCCTGTGACCACCCAGAGGGCCCCTTCTTGCTGGTGAGTGACA
CACATACACAAACACACACACACACTCACAAGCTCTCAGGAACCCCTATGGTGAGTAGAG
TCTGAGTCCCTCTTGATAGCAGGCACTGCTGTTCTGCCTCCTCTTTGTGCACCACATGGA
ATGCAGGCTCTGTCCTTCAGACTTGTGTGGCATCAACTGTTCCCTGTAGCCTCTGCAGTT
GTGCTGGGTGCCTGCTGTGTGAACTCATGTGTTTTTGTAGCCATGGTGCCTCTGCTTTCC
TGTGTGCTGATGGGGGCTGCAGTCCCTGTCTTCACTGTTTCTTCACGCCTTCATTCTTTG
CTGCTTTTTATGAGGGGCAGGGCCCCTGACCTTCAGGGCGGGGCTACCTTCTACCATGTG
CTCTTCAGCTTGTCTGTCCACTTTTCTACACGTGAAGTGGGAATGTGCTTTGAACTGGTT
TCCAGAGTTTGGTGGTTATATTTCAATTTTGTGAAACATTTTAAATATGCATGCTCTTAA
CCTAATAATTGTAATTTAAGGCATCCCCGTGAATGTACGCTGTGTATATACAGGGCCTAG
GCAGGAGTACTCACTGTAGCAGTAGTTATAATAACTTTTGTACTCCTGGCTGACCTTCCC
AAATTAGTAACCTTTGTAAATTGCCATCAGTGCCAGAGGAAACATTGTAATTGTAAAACA
CACAAGCAAGCTGCTTGTGTCCTAGACAGGAAGGGCAGTGGAGGCTCACATCAGGCTCCT
GCAGGGGATGTGGGCTCTGCTCTGAACACTTAACATTGCTGTGGGCTGTGCCCACCCTTC
AGTGGGGGACACAGCTCTACCAGAATGTGATGGTACGCCTCATTGTCACATTCTTTCTGT
TCCAGGTAGCCTGTGATGAAGGGACCCTCTACACTATGAC..........

Sequence Detail Report

Gene Symbol (Gene ID) Fbxw17 (ENSMUSG00000037816)
Transcript ID ENSMUST00000176913
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 44 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information