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Target CDS Information

Gene Symbol (Gene ID) Arhgef2 (ENSMUSG00000028059)
Cross Reference
EMBL AC145168
GO GO:0000902, GO:0005089, GO:0005515, ...show all
goslim_goa GO:0000902, GO:0003674, GO:0005575, ...show all
MGI_trans_name Arhgef2-014
OTTP OTTMUSP00000061981
OTTT OTTMUST00000110938
UniParc UPI0002467715
Uniprot/SPTREMBL H3BJ59
Vega_transcript Arhgef2-014, OTTMUST00000110938
Vega_translation 187587, OTTMUSP00000061981
Definition protein_id:ENSMUSP00000134859
translation:
MTGRDKTREKEKMKEAKDARYTNGHLFTTISVSGMTMCYACNKSITAKEALICPTCNVTI
HNRCKDTLANCTKVKQKQQKAALLRNNTALQSVSLRTTTRERPTSAIYPSDSFRQSLLGS
RRGLSSLSLAKSVSTTNIAGHFNDESPLGLRQILSQSTDSLNMRNRTLSVESLIDEGVEV
FYNELMSDFEMDEKDFEADSWSLAVDSS

Chromosome 3
Length
Position(start - end)
16,957
88,616,637 - 88,633,595
Orient to Chromosome plus
Link Location : (3:88616637-88633595)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Arhgef2 (ENSMUSG00000028059)
Transcript ID ENSMUST00000177023
Reports
substitution
cSNPs0
Insertion22
Deletion19
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000177023)
MTGRDKTREKEKMKEAKDARYTNGHLFTTISVSGMTMCYACNKSITAKEALICPTCNVTI
HNRCKDTLANCTKVKQKQQKAALLRNNTALQSVSLRTTTRERPTSAIYPSDSFRQSLLGS
RRGLSSLSLAKSVSTTNIAGHFNDESPLGLRQILSQSTDSLNMRNRTLSVESLIDEGVEV
FYNELMSDFEMDEKDFEADSWSLAVDSS
MSMv4 transcript
MTGRDKTREKEKMKEAKDARYTNGHLFTTISVSGMTMCYACNKSITAKEALICPTCNVTI
HNRCKDTLANCTKVKQKQQKAALLRNNTALQSVSLRTTTRERPTSAIYPSDSFRQSLLGS
RRGLSSLSLAKSVSTTNIAGHFNDESPLGLRQILSQSTDSLNMRNRTLSVESLIDEGVEV
FYNELMSDFEMDEKDFEADSWSLAVDSS
homology100.00 (208 / 208)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Arhgef2 (ENSMUSG00000028059)
Transcript ID ENSMUST00000177023
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ACCTGAGTTTGATATTATGACACATATTGTGGAAGGAAAGAATTAGCTCC
TGAAAGTTGCCCTTTGACCTCTACAGGTGTGCTGTGGCATGAGCACACACACACACACAC
ACACACACACACACACACAAATAAAATCTAATTTAAAATTAGAAAAAAAAAAGGAAAAGC
AAGCATGATGTATGAAAACATCACATTGTGGCCCTTACATATATTCTATTATTCTGAGTT
GATTTAAAAAACAATACCCTACATTCCGATTTACAAATGGGATGCAGTAGCACAGGCTGA
CTGCAAACCAAGCACTTGGAAGGTAGAGCCAGGAGGATAGGTGCAAGCCTTTAATTCCAG
CACCCAGGAGGCAGAGGCAGATGAATCTCTAAGTTCGAGGCCAGCCTGGTCTACAGAACA
AGTTCTAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAACACAAAGCCAAAAC
CAAAACAAGTCAAGATCGTCCTCAGCTCCATGGTGATATCAAGGCCAGCCTGAGCTACCT
AAGACCCTTCTCAAGCATAAGTTGAAAAGAAAGAGGTTGGCAGGTGGGCTCAGCAGGTAA
TAATGCTTGCTGTGCAGAACACAGCCTGAGTTTGATCCCTGATTCCCATGCTGGAAGGAG
AAAAAGCCACTCCTGAAAGTTGTCCTCTGACCTCCACACCCAACAGAAACACAAAATAAC
AATGGAAAATATATAAGGTGGTATTTTCTTTCCAGGTTAATGGATTAAGCTGCTGGATAC
TATCTTAACTCTTTCTAGAGAAATAGCCCAGATGAGGGGTAGTGGAGAATCTTGGGAGGC
CTGGTGGAGACACATTTGCGGATGTGGGCAAAGCAAGGGCTTCATGTGAGAACTCCACAC
AATTCCAGGGTCAGAGTTTCTGCTATCCATCTGCTGCCTCTTCGGTTCCCTCGGTCACTG
GCATGCTGTCCAAGGCTGTGTCCATGAGTGATATCAATCTCCTCTCGGAC
1 EXON 1 88,614,609 88,614,624 - - 16
TGCTCAGATCCAAATG
INTRON 1 - 2 88,614,625 88,615,481 857
GTGAGTGAAAGCCGAGAATGGCGGT..........TCTCTTTTCCTTGTATGCCTTGCAG
2 EXON 2 88,615,482 88,615,521 - - 40
GTAACTCATCTCAGTCCTATGTCACAGACCTCAGCAAATG
INTRON 2 - 3 88,615,522 88,616,560 1,039
GTGAGTTTGGGGGATTCTGAAAGCC..........TTATCTCTTCCCTGTCTCTCTGCAG
3 EXON 3 88,616,561 88,616,654 - 0 94
TGGTAAACAGCTGGAAGAGGACTCGGGGACCTGGGCAGGCTCCTCCCTGCGACGGACCTT
CAGCTTCCTCTTGGGCATGACCGGCAGGGACAAG
INTRON 3 - 4 88,616,655 88,629,786 13,132
GTAGGAGTCAGCCTGGGAAACAGAG..........CTTCTGTCTCTCAATCTTTCCACAG
4 EXON 4 88,629,787 88,629,931 0 1 145
ACCCGGGAAAAGGAGAAGATGAAGGAAGCTAAAGATGCCCGCTATACCAACGGCCACCTC
TTCACCACCATCTCCGTCTCCGGCATGACCATGTGCTATGCCTGTAACAAGAGCATCACA
GCCAAGGAAGCCCTCATTTGTCCTA
INTRON 4 - 5 88,629,932 88,631,910 1,979
GTAAGTTTTTGGTCCCAAAGGTGAC..........ACCCTCTCTACCCCCACCCTGCCAG
5 EXON 5 88,631,911 88,631,978 1 0 68
CATGTAACGTGACCATCCACAACCGCTGTAAAGACACCCTGGCCAACTGTACCAAGGTCA
AGCAGAAG
INTRON 5 - 6 88,631,979 88,632,275 297
GTGAGCTAGATGGCAGAGTGGGCAG..........GTCTCTCTTCTGCTCTGTGTCACAG
6 EXON 6 88,632,276 88,632,333 0 1 58
CAACAGAAAGCTGCACTGCTGAGGAACAACACTGCTTTGCAGTCTGTCTCCCTTCGAA
INTRON 6 - 7 88,632,334 88,632,912 579
GTAAGAGTGAGTTCACAGGGCCACC..........TCCTGCTTGGCCTCCTTCCTTACAG
7 EXON 7 88,632,913 88,633,042 1 2 130
CGACCACCAGAGAGCGGCCAACGTCTGCCATTTACCCTTCCGACAGCTTCCGGCAGTCCC
TCCTGGGTTCTCGGCGGGGCCTCTCCTCCTTATCTTTGGCCAAAAGTGTTTCCACTACCA
ACATTGCTGG
INTRON 7 - 8 88,633,043 88,633,257 215
GTGAGCTTCTGTTTGGGGCAGAGGG..........TGCAGATGGCCTCCACTTCCTTCAG
8 EXON 8 88,633,258 88,633,367 2 1 110
ACATTTCAATGATGAGTCTCCTCTGGGGCTGCGTCAGATCCTCTCCCAGTCCACAGACTC
CCTCAACATGCGGAACCGAACCCTGTCCGTGGAATCCCTTATTGATGAAG
INTRON 8 - 9 88,633,368 88,633,499 132
GTGAGCAGACCCGGCCCTGGGGAGA..........GCCAGCGGCACTGATGCACACGCAG
9 EXON 9 88,633,500 88,633,595 1 - 96
GTGTAGAAGTGTTCTACAATGAGCTGATGAGCGACTTTGAGATGGATGAGAAGGACTTTG
AGGCGGATTCTTGGAGCCTTGCCGTGGACAGCAGCT
3' upstream sequence
TCCTGCAGCAGCACAAAAAGGAAGTGATGAAGAAGCAAGATGTCATCTATGGTATGCTAA
GGCCACTTTGGTCCCCCTGCACCTGTCTTTTAATCCAGGCTTTGCTTACCTGAGTCTTCT
CCCTGCCACCTACCTGTTGGGACACCCTCATCCCATCCTTGGCCTCCATGTCCCCAGCTA
GTACCAACTTGTTCCCTGTACACCTACTTCTTGGTGCCGTTGGCAATTTTGTTTTTTTTG
TTTTGTTTTGTTTTGTTTTTGTTTTCGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCT
GGCTGTCCTGGAACTCACTTTGTAGACCAGGCTAGCCTCGAACTCAGAAATCCGCCTGCC
TCTGCCTTCCAAGTGCTGGGATTAAAAGCGTGCGCCACCACTGCCCAGCACTGTTGACAA
TTTTGTAATTTTATATTTAAGAGATTAGAGTCTCAGCATGTAGGCCAGGCTGGTCTCAAA
CTCTCGGTCCTCCTGCCTCAGCCTCCGGAGTTCTGAGATTTTGAGTACATACCACTGCAC
CCAGCTCCCAATGCTCTACTCATATCTCTTGCTCAAGTCAGTCCTCGGTCTTCATCCTGC
CTCTCCCATGGCCAACACTGTTCCGGGAACTGGGAAGCCTACACCTCTAACACACAGAAC
TCTTGCCCTGAAAGAGTGTACTGCTTGAAATGACAAGGAAGTGGTCTGAGACGACAGCCA
CACAAGCGTTAACTTGGAAGAGATCCACATAAGAATCCCATGAGTTGTGCCCGAGGTAGA
GTACGGCAGGAACAAATGTCCCTTTGTCCCGTAGAGCTGATCCAGACAGAGCTGCACCAC
GTGAGAACCTTGAAGATTATGACCCGCCTCTTTCGCACTGGGATGCTGGAAGAGTTGCAG
ATGGAGCCAGAAGTGGTCCAGGGCCTGTTCCCCTGCGTGGATGAACTCAGTGACATTCAC
ACACGTTTCCTTAATCAGCTTCTGGAACGGCGGCGCCAGG..........

Sequence Detail Report

Gene Symbol (Gene ID) Arhgef2 (ENSMUSG00000028059)
Transcript ID ENSMUST00000177023
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 208 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information