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Target CDS Information

Gene Symbol (Gene ID) Ankrd44 (ENSMUSG00000052331)
Cross Reference
EMBL AC151572, AC160472, AC166111
GO GO:0003674, GO:0005575, GO:0008150
goslim_goa GO:0003674, GO:0005575, GO:0008150
MGI_trans_name Ankrd44-008
OTTP OTTMUSP00000062349
OTTT OTTMUST00000111399
UniParc UPI000268B580
Uniprot/SPTREMBL J3QK37
Vega_transcript Ankrd44-008, OTTMUST00000111399
Vega_translation 179303, OTTMUSP00000062349
Definition protein_id:ENSMUSP00000137216
translation:
MLIHKTEDVNALDSEKRTPLHVAAFLGDAEIIELLILSGARVNAKDNMWLTPLHRAVASR
SEEAVQVLIKHSADVNARDKNWQTPLHVAAANKAVKCAEVIIPLLSSVNVSDRGGRTALH
HAALNG

Chromosome 1
Length
Position(start - end)
61,854
54,766,792 - 54,828,647
Orient to Chromosome minus
Link Location : (1:54766792-54828647)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ankrd44 (ENSMUSG00000052331)
Transcript ID ENSMUST00000177679
Reports
substitution
cSNPs4
Insertion87
Deletion85
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num1
synonymous substitutions 54766844 (p.Asn109Asn), 54766979 (p.Ala64Ala), 54828621 (p.Val9Val),
non-synonymous substitutions 54828645 (p.Met1?),
B6 transcript
(ENSMUST00000177679)
MLIHKTEDVNALDSEKRTPLHVAAFLGDAEIIELLILSGARVNAKDNMWLTPLHRAVASR
SEEAVQVLIKHSADVNARDKNWQTPLHVAAANKAVKCAEVIIPLLSSVNVSDRGGRTALH
HAALNG
MSMv4 transcript
ILIHKTEDVNALDSEKRTPLHVAAFLGDAEIIELLILSGARVNAKDNMWLTPLHRAVASR
SEEAVQVLIKHSADVNARDKNWQTPLHVAAANKAVKCAEVIIPLLSSVNVSDRGGRTALH
HAALNG
homology99.21 (126 / 126)
First 3 nucleotide was modified.

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Ankrd44 (ENSMUSG00000052331)
Transcript ID ENSMUST00000177679
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........ACAGATTATTTACAATGTCCTCAAACTGGAAGCAACTCACATTCTAGTGA
CAGATCAGTGGGTCAATAAAATGTATTTTAACTGTACACACAGGGTATTATTAATTAGCC
TTTGAATGAGGGATTAAGCTGTAGATCAGTGGGGAAGTACTTGTTCTAGCATCCAATGGG
GTCTTGGGTTCAATATTCTGTGCTGGAAAACAACCAACCAACCAACCAACCAACCCCAAC
CACCCACAGTCAAGTCAGGAAAGGTTGGTGTCCATTCCAAAGCTGTGAAAGTAGCCGATG
ATCATGAAAATGAAGCAGTACCTGGACATGCCAGCCCAATTCTAAGAACAGTCTACGTAC
ACAGGCTTGGGTTTAAAACACAGGTCCTCAACCTGAGCCCATCTTGGGACCTGCATGGTG
GTGTGGCATGGCCATTGTACTCATGGGTTCACAGCAACTGCGGGGACCTGCATAAGACCT
GCATAAGATGGGCCCTGTCAAAATTCTATCAGGCACTTTGAAGGCCCCACCCCCTCCTTT
AGGAGCAATTAGCAATAAGATTACTGAGTGAACAGTCATTTTCTTTAGCAGTGTAGCCAC
CAAAAAATTCCCTATGTTCCTGTCAATATCCCATGGCCATTGCTCATGGAAACTATCTTA
AACTCAGTGGGTGTAGTGGCATGAATATGCTTGGCCCAGGGAGAGGTACTATTAGAAGGC
ATGGCCTTGATTAAGTAGGTGTGGCCTTGTTGTGTTTGTTTGTTTGTTTGTTTTTTTGAG
ACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCC
TCGAACTCAGGAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTGAAGGCATGCACCA
TCACACCCGGCAGGCATGGCCTTGTTGGAGGAAGTGTGTCACTGTGGATGTGGACTTTAA
GACCCTCCTCCTAGCTGCCTGGAAGCCAGTCTTCTAGATGTCTTTAGATG
1 EXON 1 54,884,620 54,884,711 - - 92
AAGACATAGAATTTTCAACTCCTCCTGCACCATGCCTGCTTGAATGGTGCCACACTCCTG
CCTTAATGATACTGGACTGAACCCCTGAACCT
INTRON 1 - 2 54,828,696 54,884,619 55,924
GTAAGCCAGCCCCAATTAAGTGTTG..........AATACTCAGTTTCTTGGTTTTGCAG
2 EXON 2 54,828,612 54,828,695 - 0 84
CCACCACTGGTCCAGGCAATCTTCAGTGGCGACCCAGAGGAGATTCGCATACTCATCCAT
AAGACTGAAGACGTGAACGCACTG
INTRON 2 - 3 54,792,532 54,828,611 36,080
GTGAGAGACTGTGGTTGTTGTATGG..........CATACTTTGATATTGTGTATTTTAG
3 EXON 3 54,792,453 54,792,531 0 1 79
GATTCTGAGAAACGAACCCCGCTTCATGTGGCTGCATTCCTGGGAGATGCAGAGATCATT
GAACTCCTGATTTTGTCAG
INTRON 3 - 4 54,778,358 54,792,452 14,095
GTAAATAACTACTGTATTCAAAAGC..........CCCTAACTTGTGCTTTTGGTTGCAG
4 EXON 4 54,778,287 54,778,357 1 0 71
GAGCTCGTGTAAATGCCAAGGACAACATGTGGCTGACCCCACTGCACCGGGCTGTTGCTT
CCAGAAGTGAA
INTRON 4 - 5 54,766,985 54,778,286 11,302
GTGAGTGATCTCCCCATTCAGTCTA..........ATCCTGAAAACTGTTTCTGTTGTAG
5 EXON 5 54,766,792 54,766,984 0 - 193
GAGGCGGTGCAAGTATTGATTAAACACTCGGCTGATGTCAATGCAAGGGACAAGAATTGG
CAGACCCCCCTCCATGTGGCAGCAGCCAATAAGGCCGTCAAGTGTGCAGAAGTGATCATT
CCACTACTGAGCAGTGTCAACGTCTCCGACAGAGGCGGGCGCACAGCCTTGCACCACGCC
GCTCTGAATGGAC
3' upstream sequence
ACATGGAGGTGAGTGTTCTCAGCATTGGGAACTGGGCCACACTACTCAGACCCTATTAGC
CACAGATGGAACCACTTTTGAGACTTTATGTGAATGTGAGAATAAGAGAGGTATGTTGCT
TGGGCAGTTATATCCATTTTCAAATCAGACCATAATGAGTTGAAACAGTAGATTGTCATT
TCAGTCTTCTCCTTTGACATGAGCAGTGTAGCCTGTCTTGCTAGCCTGTCTACCTGGTAT
GAATCCTTGAGCTGCTGTTAGGCTTGATGCTAATTTGGTTTAGATCACCTGAAAGCAACA
AGGAGCTGTCCTCATTAGAGGGAACACCAGAGTTCATTGTTTGTTATCTTTCAGATGGTC
AATTTACTCTTGGCCAAAGGGGCAAACATCAATGCATTTGACAAGAAGGACCGACGAGCT
CTCCACTGGGCAGCATACATGGGTGAGTGCTCTGTGTGTGGAAAGCAAAGTGCCAGGGTC
TTTGCTACCGTAATGGTAGGGTAAGGGCCTACTGTGCACAAAACCCTGGTTTTCATTCCC
AACATATCATACAGCAATTAAAGACCACAAGCAGATGACCTTGGCTACATATGCCATGGG
CCTCTTGTTGACCATGTAGGACAAATCTGACTTAAGTGTTGGCTTTCACTTGAATGAAGA
TTTGGCCTGTTTTCCTGGCATCTGTAAAGTGCTCTACTTGGACAGTTGCCTTGTCAGAGG
TTTATTTATCCCAAAACAGGGGGAGGATGACTCATGGCCTGGACCTCTCTGAACATTCTT
CACTCTGGATCGGAAACTACAAACATTTCTTGTATGTTAGTTTGTTATGGCATCAAATAA
AGTGTTTAGGAAAGAAAGCAGGCTGATTAACAAAGCAAGGACACTATGCTCCTTATCTTT
GTGCTTCTAATTATTTTTGGAAAAGACAAAGGGAAGGAAGAGAGGGCAGCTTCCTCTGTA
TATGGAAGTGGAAGATCCTAGTAGCTCAGGCTTCTGCTGT..........

Sequence Detail Report

Gene Symbol (Gene ID) Ankrd44 (ENSMUSG00000052331)
Transcript ID ENSMUST00000177679
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 126 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information