top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Cross Reference
EMBL AC123072, AC124386, AC127433
GO GO:0003779, GO:0005515, GO:0007010, ...show all
goslim_goa GO:0000902, GO:0003674, GO:0005575, ...show all
MGI_trans_name Dst-006
OTTP OTTMUSP00000068866
OTTT OTTMUST00000116988
UCSC uc007aoh.1
UniParc UPI0000F4CB13
Uniprot/SPTREMBL A0A0A6YXR1
Vega_transcript Dst-006, OTTMUST00000116988
Vega_translation 178902, OTTMUSP00000068866
Definition protein_id:ENSMUSP00000142098
translation:
MLLLCHPPQSSGNASYRCSMSSSADFSDEDDFSQKSGSASPAPGDTLPWNLPKHERSKRK
IQGGSVLDPAERAVLRIADERDKVQKKTFTKWINQHLMKVRKHVNDLYEDLRDGHNLISL
LEVLSGDTLPREKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGNPKLTLGLIWT
IILHFQISDIHVTGESEDMSAKERLLLWTQQATEGYAGVRCENFTTCWRDGKLFNAIIHK
YRYRMCPALSHANTSHSFISGVFNRMLLLKGHCVCVREERAR

Chromosome 1
Length
Position(start - end)
129,215
34,006,164 - 34,135,380
Orient to Chromosome plus
Link Location : (1:34006164-34135380)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Transcript ID ENSMUST00000182314
Reports
substitution
cSNPs3
Insertion85
Deletion135
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num2
synonymous substitutions 34116141 (p.Arg137Arg),
non-synonymous substitutions 34135283 (p.His251Arg), 34135324 (p.Arg265Cys),
B6 transcript
(ENSMUST00000182314)
MLLLCHPPQSSGNASYRCSMSSSADFSDEDDFSQKSGSASPAPGDTLPWNLPKHERSKRK
IQGGSVLDPAERAVLRIADERDKVQKKTFTKWINQHLMKVRKHVNDLYEDLRDGHNLISL
LEVLSGDTLPREKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGNPKLTLGLIWT
IILHFQISDIHVTGESEDMSAKERLLLWTQQATEGYAGVRCENFTTCWRDGKLFNAIIHK
YRYRMCPALSHANTSHSFISGVFNRMLLLKGHCVCVREERAR*
MSMv4 transcript
MLLLCHPPQSSGNASYRCSMSSSADFSDEDDFSQKSGSASPAPGDTLPWNLPKHERSKRK
IQGGSVLDPAERAVLRIADERDKVQKKTFTKWINQHLMKVRKHVNDLYEDLRDGHNLISL
LEVLSGDTLPREKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGNPKLTLGLIWT
IILHFQISDIHVTGESEDMSAKERLLLWTQQATEGYAGVRCENFTTCWRDGKLFNAIIHK
YRYRMCPALSRANTSHSFISGVFNCMLLLKGHCVCVREERARE
homology98.94 (283 / 283)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Transcript ID ENSMUST00000182314
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TCACTGTGAGCCTGGGCAAGTGAAGACTTCCCTTTGATACTCTTCAGAAT
TCTTAATCCAGTCTATAGCATCTCTTCCTTGCTGAGGTGTGGGCTGTCTAAATACTCACA
GACACAACCCAATAAGAGGGAAGGAATAAGACCATGTGCCTTTTATGAAAACATTATGAC
CCCGAGGATTCTAAGCGCCTGCAGGATCCAGGAAGAGTAACCTTCAGGCAGAGTGGTTTT
GGTAAAAGTCTGTGTTTCTCATCTTCCTGATGGCTGCAGCTGAGGAGAACTTGGCTTCCT
GTCCCCGCACTGTGTCCTCATTTACATTATTGGCAGCCCTTCGCTGCTGGAAGTTTAAAT
TATCTCAAGAACTCTAAACTGAGTTCAGATGTTTGTTTATTGGCGTTGCCTTCGGCCTTT
GAAAGCAGGCTTTTGTGTTCTCCCGGTCTTAAGAAAAGGCTCTTCTCAGAATCAGCCCTC
CCTCCCTCCCTCCTCACCCTTTTCTGGGAACCCGCTTCAGTCTCATGCAGAAAATTAAAT
ACAGGGCTCAAAACTGGTTAAAAGGAGGCTCCAGTGGCCCCGGCGGCTTGAAACGGGAAG
GAGGTGGGACCCAGCATCCTGTATTTGTGCTGTGTTTATGAAACTTAAAGTTAGTTGCAT
TAATGAATTAACCAGAAGGCTAGTAATGGAAAATGTTTCTCCTGTCCTGGTGGGGGAGCC
AGATACTGTAGATTTGTCACAGGAAGGCTGTTGATTCTGGCTTCATTGTTGGCCCAGTCA
TTTGTTGAGCCGGTGGCTGGAGCGCAGGCCACACACTTCTTCCTTCTGGTCTCCATGTAT
TGGAACAGCTTGCTTATTGTTTCTACGGGAGCAGACTTGGCCAAGAAGATATGGTGAGCC
CTGGGGTTCGTTTTGTTTTTTTATTTGTGTGCGTGTTCTCTGGGGACGGCGCAGCGCAAT
TTAGAGGTGGGGAGGGGGCAGAGTGATCGTCATCGATGATCTTCAGTGAG
1 EXON 1 34,006,126 34,006,398 - 1 273
TGATGCTCGTTTGCGAGCGAGCGAGCGGTCGGTAGCTAATGCTTCTCCTGTGTCATCCTC
CTCAGAGCTCCGGGAACGCGTCCTACCGCTGTTCTATGTCCTCCTCTGCGGATTTTTCTG
ACGAGGATGATTTCAGCCAGAAATCTGGCTCAGCATCTCCGGCTCCTGGAGACACCTTAC
CCTGGAATTTGCCCAAGCATGAGAGATCCAAAAGAAAGATTCAAGGGGGCTCGGTGCTGG
ACCCAGCCGAGAGGGCTGTGCTTCGGATAGCAG
INTRON 1 - 2 34,006,399 34,086,241 79,843
GTGAGTGGGGGAGGGGATGGAGTGG..........TTATGTTTGTTTGTTTGTTTTCCAG
2 EXON 2 34,086,242 34,086,303 1 0 62
ATGAGCGGGACAAAGTTCAAAAGAAAACATTTACAAAATGGATAAATCAGCATCTCATGA
AG
INTRON 2 - 3 34,086,304 34,113,932 27,629
GTGAGTCGCTCGCTTGCTCACTCGC..........AAAGATGGCCGCTTTGTCGCCGTAG
3 EXON 3 34,113,933 34,114,022 0 0 90
GTTCGGAAGCACGTGAACGATCTCTACGAGGATCTGAGGGACGGGCACAATTTGATCTCC
CTCCTGGAGGTTCTGTCTGGAGACACCTTG
INTRON 3 - 4 34,114,023 34,116,117 2,095
GTAAGTGTGCGCTTTCCTGATTTCT..........CACACCTTCCATTTTCTGTCCTTAG
4 EXON 4 34,116,118 34,116,195 0 0 78
CCCCGGGAGAAGGGTCGGATGCGCTTTCACAGGCTACAGAACGTACAGATTGCACTCGAC
TATTTGAAAAGACGCCAG
INTRON 4 - 5 34,116,196 34,117,431 1,236
GTATGAGATTTTTCAGACTCTAGCG..........GTTTCTCTCTCTCACCTACAAACAG
5 EXON 5 34,117,432 34,117,524 0 0 93
GTGAAGTTGGTGAACATCAGAAATGATGACATAACAGATGGAAATCCTAAGCTGACTTTG
GGGTTAATATGGACAATAATTCTGCACTTTCAG
INTRON 5 - 6 34,117,525 34,135,089 17,565
GTGAGTCCACTTTGTCTTTGTTGCC..........GGTCTGATGCTTCCGTTATATTTAG
6 EXON 6 34,135,090 34,137,136 0 - 2,047
ATATCTGACATCCATGTCACTGGAGAGTCAGAGGACATGTCTGCGAAAGAAAGGCTGCTC
CTGTGGACACAGCAGGCGACAGAAGGCTATGCTGGGGTGCGGTGTGAAAACTTCACTACC
TGCTGGAGAGATGGGAAACTATTCAATGCCATCATTCATAAATACAGGTACAGAATGTGT
CCGGCCTTGTCGCGCGCAAACACAAGTCATTCCTTCATTTCTGGCGTTTTCAATTGTATG
CTCCTGTTGAAGGGGCACTGCGTGTGCGTAAGAGAGGAAAGGGCCAGAGAAAATGAAAGA
CAGCACTGGCCCACAGCTGAATCAGTACTCTAAACTGTAACACACACACACACACACACA
CACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGACAGACAGAGA
CGGGCAGAGCAGCAGAGTGGTGTTATATCTGTATATCTGGAATATATATATATATATATA
TATACACATACATATATATGTATGCACACACACACACACACACACACACACACACACCCC
TTAGCAGAAAGTAAGCTCAGATGCCTGTAATCTGCAGGTCAGTGATCTAGTTTATCTACA
GGTTACCCATGAGCAGACAGGCAAAGGTTCATAGTTCACAAGCTTAACAAGGCGTGAAAC
TCCAGGTCGTACCACTTTGCCATGCTGAGGGGTGACTGGGCAGCAGACTTGGGGTTGGTG
AACAGTTTTCCTGTGAAAATTACGAAGTCTTGCCGTTAACAATGAAGTGACAGTGAGTTT
ATAACAAGCATTGCTATAAACACTGGTTAATTTGGTTCTCACACCATCTTTGTCACCCCT
GGTTATATATGAAGCCAAGACACTGGGTAATATTTGCCTAGCCACAAGACTAGTGAGTGG
CACCCTTGGGATTCAGACGTGGCAGGCAGGCTCTCGAGTGTGTGCTTTTACTGTCAAACT
GGAAATTAAACCCACTTAAAATGTTCATTGACAACTCTGGGTTTAACCTTGGTTATTTTC
TTTGATTGTCCAAAGATTGTATCATATTGAAGAACACATATATTTACAAACAGATTAAGT
CTAAGCTATAAACTTATAAAACTTAAAAAGGTATTGAGTATAATAAAAATCATACAAAAT
AAGTAATGAACTATTCCGGTATCCACACTCAACAGCCCCTATGCTTAAGCAGTCTGATAT
TATGTCCTTCCGTTATGGAACACTCTTTAAACAGAGGTGAGTACACGCACGTTCTGAATT
AAGACGAAAGCCTGGGTCCACTCGCCTGCCTTGCTCACTGAGTATCTCGGTGCTGAGGGC
ATTTCCACTGTTATCCACCTGTCCCAGGGAGACAAGACTGGGGTACCGTGGAGCTCTTTC
TCTGAATCTTTTTAGGTGGCATAGAAATGTTTTTAGAGGCTAGCTTAAGAAATATCTGTA
TTGGCCCTGGTGGCACATACTTGGAATGTCAGCACTCAGGAAGCCGAGGCAGGAGGCTCA
TACATTTGAAACCACTCTGTGATCCAGAGCAAAACCTTGTCTCTAAATAAATAGGTGGGA
GGGAGGGTGGATGAGTGGGTGGGTGGGTAAGTAGCTTAAACTCACTGTCATTGCTTTTGG
TTAGAAATGGGATCTATTTTTTAATTTATGTGCATGAGTGGTTTGGGTGTTTGTTATGTA
GCACTAGCATACCCCGTGTTCTCGGGGTGGGGGGTGAAAAGAGTGGGGTTATACATCGCT
GTGTGAGTAGTCAGTTCTCTGGAAGACATCAGCCTGCTCATAGCCATTGAGCCATCTCTC
TCCAGCCCAGGAATCAGAATTGTAGGTTTTTTTTCTTCACTAGAATTCCTGGTAGAATTG
AAAATAGCAGCTCTAAATGCATGCAAGGTCTCTGTTGCTCAAGGTCTGTTGTAGGATCAT
GTGCCCCATAGTTGGTTTCTTACATAAAAAGCCTTAATTCTGTAAGACTTATCTTAAAGT
CTTTGGGCCTTTCTTAAGAAAACAGTTGAGTTCTTTTCTTCCAGTGTGTGTAAGAATTAA
ACAGCTA
3' upstream sequence
AAAAAAAAAAAAAAATTAAACAGCTAGGCTGGACTTGCACATTTCTTAATTAATATCTTA
ATTCATTCCATATGCAAGAGGCCAAGTAATAAGCAAGGAAAATTTCACCTTACGTGGGTT
TGGGGTATTAACAACCGTAGGAACTTAGGAGCAGTGTTTCATTTTATAGGTGGTTTTACA
TAATTACTCCCATATGCTTTTAAGGTATTTAAGTTTGCTGTGGAATCCTCTATTTAGTGG
GGTTTTATCCTTTGTATTTATTTAGATAAGATGCTGGACCTCTTATTGGATCTCATTTGG
CTTCAGTAATGTTATCTGAGCTAGTAGGTGGGCCTGGGTTCTAAGCAAATGAGGACCTTT
AGAGGTGGTGATATCTGGCTGCAGTAGGTAGTAAATGGTTGCAGTGGCTGGGGGAGGTGG
CTGCAGTGGCTGGGGCAGGCAGGCAGCTGCAGTGTCCAGAAAGCTTTAAGTTGTGTAGGT
CAGCTTCTATACGTAATAGAAAGACTAGGGGTTAAAAATGAAAATATATACTGTCTGTCA
TCACAAAGTAGGCAAGTATTACTTTACATAAGAGACTTATTAAGGCTTTCTTATATAAGA
TCTCCTAAGGAAATAAATGCAGAGTCACTGCAGATTCAGTAGGTTTCCCTATTGCATTTG
CAAATGTACTTGGGTTTTGTTGTCCCTCAGCACCACCATCCCCCATCCCCGTGCTCAAAA
TTTTGGATTAATACAAACTGCATTGTGAGAAGCCATTGTTGGGGTGAATCACTTCAGAGA
GTCTACAGCAATGTTTAGTAGTATTGTCATCTAGAATATCTACAAGAAACAGGTTTGCTA
ACCTAAGTAAACAGTATTTAATTAACAGGTCAATATCCTAAGATTTTTACATAGTTTAGT
TTTCTGATTTTTATGTCCAAAGAACTATTATATGAAGTTGAATAAAAAGTAATTTTTAAG
GGTAGCATAGACTTTGTAATTTGAAATTGTGCACAGAGGT..........

Sequence Detail Report

Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Transcript ID ENSMUST00000182314
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 283 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information