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Target CDS Information

Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Cross Reference
GO GO:0005509, GO:0005515, GO:0007050, ...show all
goslim_goa GO:0000902, GO:0003674, GO:0005575, ...show all
MGI_trans_name Dst-011
OTTP OTTMUSP00000065441
OTTT OTTMUST00000116999
UCSC uc007aop.2
UniParc UPI0003335286
Uniprot/SPTREMBL S4R2C6
Vega_transcript Dst-011, OTTMUST00000116999
Vega_translation 178910, OTTMUSP00000065441
Definition codon_start:2
protein_id:ENSMUSP00000138591
translation:
XHKKSRVMDFFRRIDKDQDGKITRQEFIDGILSSKFPTSRLEMSAVADIFDRDGDGYIDY
YEFVAALHPNKDAYKPITDADKIEDEVTRQVAKCKCAKRFQVEQIGDNKYRFGDSQQLRL
VRILRSTVMVRVGGGWMALDEFLVKNDPCRAKGRTNMELREKFILADGASQGMAAFRPRG
RRSRPSSRGASPNRSTSASSHACQAASPPVPAAASTPKGTPIQGSKLRLPGYLSGKGFHS
GEDSALITTAAARVRTQFA

Chromosome 1
Length
Position(start - end)
12,204
34,294,446 - 34,306,651
Orient to Chromosome plus
Link Location : (1:34294446-34306651)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Transcript ID ENSMUST00000182507
Reports
substitution
cSNPs7
Insertion14
Deletion24
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num6
non-synonymous num1
synonymous substitutions 34294515 (p.Arg23Arg), 34295467 (p.Thr87Thr), 34295518 (p.Ile104Ile), 34299768 (p.Thr126Thr), 34306593 (p.Ser239Ser), 34306626 (p.Ala250Ala),
non-synonymous substitutions 34303018 (p.Ala213Thr),
B6 transcript
(ENSMUST00000182507)
HKKSRVMDFFRRIDKDQDGKITRQEFIDGILSSKFPTSRLEMSAVADIFDRDGDGYIDYY
EFVAALHPNKDAYKPITDADKIEDEVTRQVAKCKCAKRFQVEQIGDNKYRFGDSQQLRLV
RILRSTVMVRVGGGWMALDEFLVKNDPCRAKGRTNMELREKFILADGASQGMAAFRPRGR
RSRPSSRGASPNRSTSASSHACQAASPPVPAAASTPKGTPIQGSKLRLPGYLSGKGFHSG
EDSALITTAAARVRTQFA
MSMv4 transcript
HKKSRVMDFFRRIDKDQDGKITRQEFIDGILSSKFPTSRLEMSAVADIFDRDGDGYIDYY
EFVAALHPNKDAYKPITDADKIEDEVTRQVAKCKCAKRFQVEQIGDNKYRFGDSQQLRLV
RILRSTVMVRVGGGWMALDEFLVKNDPCRAKGRTNMELREKFILADGASQGMAAFRPRGR
RSRPSSRGASPNRSTSASSHACQAASPPVPAATSTPKGTPIQGSKLRLPGYLSGKGFHSG
EDSALITTAAARVRTQFA
homology99.61 (258 / 258)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Transcript ID ENSMUST00000182507
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GGAGGAAGCTCAACGACGCCCTGGACAGGCTGGAGGAGGTCAGAAACTCC
CGCTCTGTCCCTGCTCCGTCTCCATGTTGTCCCCACTCTGGTCTGCACCGCAGGCTGCAC
TACTCAAAAAGCAAAAGCGTGGCTTTCTCTCCCATAAGCAGTGTCTCACCCTCTGAGTAC
TAGTGCTCTCCCAAAACGAACACTCAGATTGTCCCTGTTTCTGTAAGACACTCCTCTGTG
GGGTTCAGGACCCAGGGAACCAAAAGGTAGAAAACTCGTAAATCTTAGCCACCGGATGCT
GATCTCGGAGAAAAGCTTTCTAACTTGGCAGGTCTGCTGCTGGCTGGAATACATCTATTC
TCATACATACCCTGTGATGGAAGGCTTTAGTTCTTTATGTTGTGAAATTTGGAAACGTTA
GATGGCCAAGCAAATGGAGGTAGCTGGTAGGACGGAAGGACTGGATGGGTACACGCCAAG
ACCTGCATCTTCACTAAGCTCTGGCTGCCACTCTGGGCGCACACGTCCATGACTGGTGCT
GTGAGCAGTTTTCTACGTAGGGCTTTTATTCACAAAGAAAAATCAGTGGCATAATGAAAT
ATACTTTATAAGAAGTCACTTATAAAATCATATCTTCTTTGAAATGGGAGAGATGTATAT
CACCTGGAGACCGTCATCAGTGACTTTATTCAGCCAACAGAAAATGGAATTTGCTGCTCA
CACCCATACATGCAGAGGCATCACTGAGTCTGTTTAATGGGTTATTATGAGGGGGGGGGA
GTTGGAAGGGGGCAGGTTGGGGACATGAGATTTAGAGAGGAGAACCTAGAGTAGTTGTGA
TGGTGGTAGTTCGTTGTGTACGTGTATAAAATTGCCAAGAATAAAGGTGAGTTCTACAGA
CTGTTCAAGCACAGCATTGACAACAGCCAAAACTTTCGCTTTTTCTAGCTGAGGGAATTT
GCCAACTTCGATTTCGACATCTGGCGGAAAAAATACATGAGGTGGATGAA
1 EXON 1 34,294,446 34,294,546 - 1 101
CCATAAGAAATCGAGAGTGATGGATTTCTTCCGGAGAATTGATAAGGACCAGGATGGGAA
GATCACTCGGCAGGAATTCATCGACGGGATTCTCTCCTCCA
INTRON 1 - 2 34,294,547 34,295,153 607
GTAAGTGCCGAGACGTGCAATAGCC..........ACTAGCACCGCTTGGTACATTGCAG
2 EXON 2 34,295,154 34,295,308 1 0 155
AGTTTCCTACCAGTCGCCTGGAGATGAGCGCCGTGGCAGACATCTTTGACAGAGATGGTG
ATGGGTACATTGACTACTATGAATTCGTGGCCGCTCTGCATCCAAACAAAGATGCGTACA
AACCCATCACGGATGCTGACAAAATTGAGGACGAG
INTRON 2 - 3 34,295,309 34,295,461 153
GTACTCACTGTTGGCCTTCTGCTGC..........AATGTCATACCTTTGTCTTTGACAG
3 EXON 3 34,295,462 34,295,536 0 0 75
GTCACGAGGCAGGTAGCCAAGTGTAAGTGTGCCAAGCGATTCCAAGTTGAACAGATTGGT
GATAACAAATACAGG
INTRON 3 - 4 34,295,537 34,299,720 4,184
GTGAGTGTCTCAGTTGACTCCTGCC..........GGTCCTTTCTCTCTCTGCTGCCTAG
4 EXON 4 34,299,721 34,299,838 0 1 118
TTTGGAGACTCCCAGCAGCTGCGACTGGTTCGGATCCTGCGAAGCACGGTGATGGTTCGT
GTTGGAGGCGGATGGATGGCTCTGGATGAGTTCTTAGTGAAAAATGATCCCTGCAGGG
INTRON 4 - 5 34,299,839 34,302,829 2,991
GTAAGGAGACCCTTTTGTCGAGCTG..........CTTTTGCCGCCTGCGTGCAATCCAG
5 EXON 5 34,302,830 34,303,032 1 0 203
CTAAAGGAAGGACCAACATGGAGCTGCGGGAAAAGTTCATCCTAGCAGACGGTGCCAGCC
AGGGTATGGCCGCCTTCCGACCGCGAGGCCGCCGATCTCGCCCTTCATCCAGAGGAGCTT
CCCCCAACAGATCCACTTCCGCGTCGAGTCATGCCTGCCAGGCAGCCTCCCCACCGGTGC
CTGCTGCCACCAGCACACCCAAG
INTRON 5 - 6 34,303,033 34,306,527 3,495
GTAGGACTCCAGGCTGTGGCCCTCT..........CTCTCTGCACTGGTCGCACACACAG
6 EXON 6 34,306,528 34,306,651 0 - 124
GGCACACCAATCCAGGGAAGCAAGCTGCGACTACCCGGGTACCTGTCAGGGAAAGGCTTC
CACTCCGGGGAGGACAGCGCCTTGATAACGACGGCAGCTGCCAGAGTCCGAACACAGTTC
GCTG
3' upstream sequence
GTGAGTATATGATATCTCTTTCCCTCAACGGTGACCTGAGGACTAAAGTGCCCTCTCTTC
CTAATTTCAAGAGAAAGTTTTTGACGTTGCCATGTGCTTTTGAAATGAAATGAAACACTA
ATCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAGAATGGGGCGAGGACA
TAAGTCAGTACTGTGCCCTTTGCTCTGGGAGCCTCTTTGCCACCCAGGGAGTATGTAGGG
CTATTCCAGGTCACTGGGGAAACCCAGGCACTGGGCCTTCCATCATAGAGTAGTGAACTC
AGTGACTGGCCAGCACTGCCAAGGTCTGAGCTCAGCCTGAGAGGCAACTCTCACACTCTT
TAAGTCACTTCCCCTCAGGCAAGGCTTGCACCTGAGAGTCTGCAGGCACCTGGTACCAGG
AGGCTTCAGGGGACATCACTTCCCACAGCAGTGGTGTCCGCATGATAAGCCAGAATTTAA
CTTTGGTATATCAATCTAGGTATCGTTCTTTAACGTCTCCTTAGAATGCTGCCTGCCCTT
GCATGATAATGAAAAGCCTCAAGACCAAGGTATTTTCATGCTAGCACAGAGCACAAGAAG
CACAGGTTGATGTAAAAGCTGGTATTGCAGATGAGTAAGAAAGGTTCCTCACCTCTGTCC
TCTGTCCTCTCTCTCCAGAGTCCAGGAAGACTCCCAGCCGCCCAGGGAGCAGAGCCGGAA
GCAAAGCCGGAAGCAGAGCCAGCAGCCGCCGAGGCAGCGATGCGTCCGACTTTGACATTT
CAGAAATCCAGTCTGTGTGCTCAGACGTGGAGACCGTCCCACAGACACACAGACCTGTGC
CCCGAGCAGGTTCTCGGCCATCCACAGCCAAGCCTTCTAAAATCCCCACACCCCAGAGGA
GGTCACCTGCCAGCAAATTAGACAAGTCTTCGAAGAGATAGTGCAATTGGCTCCAACCAG
CCCTTCCCCGAGCATTTACTATTTAAGCGAATGATGTAAA..........

Sequence Detail Report

Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Transcript ID ENSMUST00000182507
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 258 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information