MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Pcmtd1 (ENSMUSG00000051285)

Cross Reference

GO	GO:0003674, GO:0004719, GO:0005575, ...show all
goslim_goa	GO:0003674, GO:0005575, GO:0006464, ...show all
MGI_trans_name	Pcmtd1-002
OTTP	OTTMUSP00000063587
OTTT	OTTMUST00000113809
UniParc	UPI000333527B
Uniprot/SPTREMBL	S4R1A9
Vega_transcript	OTTMUST00000113809, Pcmtd1-002
Vega_translation	178654, OTTMUSP00000063587

Definition

codon_start:3
protein_id:ENSMUSP00000138149
translation:

XPFGINHGIELHSDVVEYAKEKLESFIKNSDSFDNQLLDLDYPSKREATGQG

Chromosome

Length
Position(start - end)

7,496
7,147,637 - 7,155,134

Orient to Chromosome

plus

Link

Location : (1:7147637-7155134)
/

Detail Map

name	Pcmtd1 (ENSMUSG00000051285)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Pcmtd1 note : protein-L-isoaspartate (D-aspartate) O- methyltransferase domain containing 1 [Source:MGI Symbol;Acc:MGI:2441773]

name	Gm38372 (ENSMUSG00000103509)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Gm38372 note : predicted gene, 38372 [Source:MGI Symbol;Acc:MGI:5611600]

name	Pcmtd1 (ENSMUSG00000051285)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000061280

name	Pcmtd1 (ENSMUSG00000051285)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000182114

name	Pcmtd1 (ENSMUSG00000051285)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000182675

name	Pcmtd1 (ENSMUSG00000051285) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS35508.1 Uniprot/SWISSPROT:P59913 RefSeq_peptide:NP_898849 RefSeq_mRNA:NM_183028.3 Vega_transcript:OTTMUST00000113805 Vega_transcript:Pcmtd1-001 Uniprot/SPTREMBL:Q3TGS5 UCSC:uc007agb.1 Fantom:I0C0032I24 Fantom:I920038A18 Fantom:I920046H10 EMBL:AK166593 EMBL:AK168606 EMBL:AK168705 EMBL:BC052741 EMBL:BC110360 EMBL:BC117941 EMBL:BC117942 EMBL:CH466536 GO:GO:0003674 GO:GO:0004719 GO:GO:0005575 GO:GO:0005737 GO:GO:0006479 GO:GO:0008150 MGI_trans_name:Pcmtd1-001 Vega_translation:178652 Vega_translation:OTTMUSP00000063586 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0008150 goslim_goa:GO:0008168 protein_id:AAH52741.1 protein_id:AAI10361.1 protein_id:AAI17942.1 protein_id:AAI17943.1 protein_id:BAE38879.1 protein_id:BAE40473.1 protein_id:BAE40547.1 protein_id:EDL14266.1 OTTP:OTTMUSP00000063586 OTTT:OTTMUST00000113805 UniParc:UPI000019B09C
definition	note : transcript_id=ENSMUST00000061280 protein_id : ENSMUSP00000059261 translation : MGGAVSAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWKHGNIHLSAPCIYSEVMEALKLQPGLSFLNLGSGTGYLSTMVGLILGPFGINHGIELHSDVVEYAKEKLESFIKNSDSFDKFEFCEPAFVVGNCLQIASDSHQYDRIYCGAGVQKDHENYMKILLKVGGILVMPIEDQLTQIMRTGQNTWESKNILAVSFAPLVQPSKNDNGTPDSVGLPPCAVRNLQDLARIYIRRTLRNFINDEMQAKGIPQRAPPKRKRKRVKQRINTYVFVGNQLIPQPLDSEEDEKMEEDSKEEEEKEHIEAMKREEPPQNLLREKIMKLPLPESLKAYLTYFRDK

name	Pcmtd1 (ENSMUSG00000051285) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000113813 Vega_transcript:Pcmtd1-006 Uniprot/SPTREMBL:S4R2K3 UCSC:uc007agc.1 EMBL:AC102777 EMBL:AC157797 EMBL:AC171270 EMBL:AC171328 GO:GO:0003674 GO:GO:0004719 GO:GO:0005575 GO:GO:0006479 GO:GO:0008150 MGI_trans_name:Pcmtd1-006 Vega_translation:178653 Vega_translation:OTTMUSP00000063588 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0006464 goslim_goa:GO:0008150 goslim_goa:GO:0008168 OTTP:OTTMUSP00000063588 OTTT:OTTMUST00000113813 UniParc:UPI000333537A
definition	note : transcript_id=ENSMUST00000182114 protein_id : ENSMUSP00000138680 translation : MKILLKVGGILVMPIEDQLTQIMRTGQNTWESKNILAVSFAPLVQPSKNDNGTPDSVGLPPCAVRNLQDLARIYIRRTLRNFINDEM

name	Pcmtd1 (ENSMUSG00000051285) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000113809 Vega_transcript:Pcmtd1-002 Uniprot/SPTREMBL:S4R1A9 GO:GO:0003674 GO:GO:0004719 GO:GO:0005575 GO:GO:0006479 GO:GO:0008150 MGI_trans_name:Pcmtd1-002 Vega_translation:178654 Vega_translation:OTTMUSP00000063587 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0006464 goslim_goa:GO:0008150 goslim_goa:GO:0008168 OTTP:OTTMUSP00000063587 OTTT:OTTMUST00000113809 UniParc:UPI000333527B
definition	codon_start : 3 note : transcript_id=ENSMUST00000182675 protein_id : ENSMUSP00000138149 translation : XPFGINHGIELHSDVVEYAKEKLESFIKNSDSFDNQLLDLDYPSKREATGQG

name
type	misc_feature
link
xref
definition	note : contig AC171270.4 1..6011(-1)

name
type	misc_feature
link
xref
definition	note : contig AC171328.2 2006..41955(1)

name	Pcmtd1 (ENSMUSG00000051285)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000113808 Vega_transcript:OTTMUST00000113808 MGI_trans_name:Pcmtd1-003 OTTT:OTTMUST00000113808
definition	note : processed_transcript note : transcript_id=ENSMUST00000182306

name	Pcmtd1 (ENSMUSG00000051285)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000113814 Vega_transcript:OTTMUST00000113814 MGI_trans_name:Pcmtd1-008 OTTT:OTTMUST00000113814
definition	note : processed_transcript note : transcript_id=ENSMUST00000182823

name	Pcmtd1 (ENSMUSG00000051285)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000113815 Vega_transcript:OTTMUST00000113815 MGI_trans_name:Pcmtd1-007 OTTT:OTTMUST00000113815
definition	note : retained_intron note : transcript_id=ENSMUST00000182388

name	Pcmtd1 (ENSMUSG00000051285)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000113810 Vega_transcript:OTTMUST00000113810 MGI_trans_name:Pcmtd1-004 OTTT:OTTMUST00000113810
definition	note : retained_intron note : transcript_id=ENSMUST00000182892

name	Pcmtd1 (ENSMUSG00000051285)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000113811 Vega_transcript:OTTMUST00000113811 MGI_trans_name:Pcmtd1-005 OTTT:OTTMUST00000113811
definition	note : retained_intron note : transcript_id=ENSMUST00000183204

name	Gm38372 (ENSMUSG00000103509)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000113816 Vega_transcript:OTTMUST00000113816 Clone_based_vega_transcript:WI1-817D1.2-001 MGI_trans_name:Gm38372-001 OTTT:OTTMUST00000113816
definition	note : TEC note : transcript_id=ENSMUST00000194854

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Pcmtd1 (ENSMUSG00000051285)
Transcript ID	ENSMUST00000182675

Reports
substitution
cSNPs	0
Insertion	17
Deletion	27
SNPs	-1kb 7142665(c.-4974G>A), 7142758(c.-4881T>C), 7143035(c.-4604A>G), 7143061(c.-4578A>G), 7143062(c.-4577G>A), 7143178(c.-4461T>A), 7143224(c.-4415T>C), 7143243(c.-4396C>G), 7143639(c.-4000A>G), 7144568(c.-3071A>G), 7144570(c.-3069A>C), 7144975(c.-2664G>T), 7145082(c.-2557A>G), 7145189(c.-2450T>C), 7145510(c.-2129C>T), 7146274(c.-1365T>A), 7147011(c.-628G>A), 7147479(c.-160G>A), 5'UTR CDS 3'UTR 7160910(c.156C>T), 7169516(c.435T>C), 7169519(c.438A>G), 7169552(c.471C>T), 7169651(c.570T>C), 7169765(c.684G>A), 7169770(c.689T>G), 7169864(c.783A>G), 7169935(c.854G>C), INTRON 7148417(c.101+678C>T), 7148481(c.101+742G>A), 7148484(c.101+745C>T), 7148560(c.101+821G>A), 7148740(c.101+1001G>A), 7148821(c.101+1082A>T), 7148824(c.101+1085A>G), 7149826(c.101+2087G>A), 7149958(c.101+2219A>G), 7150560(c.101+2821G>C), 7150569(c.101+2830T>C), 7150769(c.101+3030C>G), 7151471(c.102-3609G>A), 7151636(c.102-3444G>A), 7151637(c.102-3443G>A), 7151681(c.102-3399G>A), 7151914(c.102-3166G>A), 7151991(c.102-3089C>T), 7152014(c.102-3066A>G), 7152149(c.102-2931T>C), 7152234(c.102-2846G>A), 7152303(c.102-2777T>C), 7152358(c.102-2722C>T), 7152414(c.102-2666T>C), 7152495(c.102-2585G>A), 7152515(c.102-2565C>T), 7152841(c.102-2239T>G), 7153453(c.102-1627T>C), 7153503(c.102-1577G>T), 7153663(c.102-1417T>C), 7153664(c.102-1416C>A), 7153706(c.102-1374C>T), 7153720(c.102-1360A>G), 7153753(c.102-1327C>T), 7153758(c.102-1322C>T), 7154208(c.102-872C>T), 7154287(c.102-793T>C), 7154575(c.102-505A>T), 7154754(c.102-326G>T), 7155288(c.137+17G>A), 7155328(c.137+57A>T), 7155367(c.137+96G>A), 7155653(c.137+382C>G), 7155688(c.137+417G>A), 7155695(c.137+424A>G), 7155702(c.137+431G>A), 7155712(c.137+441A>G), 7155732(c.137+461G>A), 7155751(c.137+480A>T), 7155752(c.137+481A>G), 7155850(c.137+579T>C), 7156057(c.137+786A>G), 7156078(c.137+807G>C), 7156121(c.137+850A>T), 7156189(c.137+918C>G), 7156230(c.137+959A>C), 7156270(c.137+999A>C), 7156280(c.137+1009C>T), 7156316(c.137+1045A>C), 7156370(c.137+1099A>T), 7156519(c.137+1248G>T), 7156650(c.137+1379C>T), 7156655(c.137+1384A>T), 7156657(c.137+1386A>C), 7156699(c.137+1428T>A), 7156872(c.137+1601A>T), 7156896(c.137+1625G>A), 7157587(c.137+2316A>G), 7157594(c.137+2323T>C), 7158075(c.137+2804C>A), 7158198(c.138-2694G>T), 7158202(c.138-2690G>A), 7158212(c.138-2680C>A), 7158314(c.138-2578A>G), 7158514(c.138-2378C>T), 7158556(c.138-2336T>C), 7159004(c.138-1888A>G), 7159354(c.138-1538G>A), 7159357(c.138-1535G>C), 7159459(c.138-1433C>T), 7159740(c.138-1152A>G), 7159769(c.138-1123C>T), 7160001(c.138-891A>G), 7160045(c.138-847G>T), 7160166(c.138-726T>G), 7160285(c.138-607A>G), 7160321(c.138-571C>T), 7160399(c.138-493T>C), 7160421(c.138-471T>A), 7160519(c.138-373A>G), 7160546(c.138-346C>T), 7160664(c.138-228T>C), 7160669(c.138-223T>C), 7160710(c.138-182T>C), 7161081(c.309+18C>A), 7161147(c.309+84T>C), 7161184(c.309+121A>G), 7161262(c.309+199T>C), 7161288(c.309+225C>A), 7161469(c.309+406G>A), 7161505(c.309+442A>G), 7161533(c.309+470G>C), 7161567(c.309+504T>C), 7161571(c.309+508T>A), 7161578(c.309+515G>T), 7161782(c.309+719A>T), 7161824(c.309+761A>G), 7161863(c.309+800T>C), 7161948(c.309+885G>A), 7161999(c.309+936G>A), 7162009(c.309+946T>C), 7162926(c.310-322A>T), 7162939(c.310-309G>A), 7163060(c.310-188A>G), 7163061(c.310-187G>A), 7163062(c.310-186C>A), 7163086(c.310-162C>T), 7163124(c.310-124A>G), 7163179(c.310-69A>G), 7163198(c.310-50T>A), 7163557(c.433+186C>T), 7163713(c.433+342C>A), 7164043(c.433+672G>C), 7164119(c.433+748C>T), 7164121(c.433+750T>A), 7164157(c.433+786C>T), 7164223(c.433+852G>A), 7164760(c.433+1389C>T), 7164785(c.433+1414T>G), 7164824(c.433+1453C>A), 7164844(c.433+1473C>T), 7164921(c.433+1550G>C), 7164951(c.433+1580C>T), 7164957(c.433+1586A>G), 7164988(c.433+1617C>T), 7165022(c.433+1651G>C), 7165051(c.433+1680C>G), 7165182(c.433+1811T>C), 7165449(c.433+2078A>C), 7165491(c.433+2120C>T), 7165518(c.433+2147G>A), 7165676(c.433+2305T>A), 7165680(c.433+2309T>C), 7165702(c.433+2331G>A), 7165736(c.433+2365G>A), 7165775(c.433+2404G>C), 7165777(c.433+2406A>G), 7165952(c.433+2581A>T), 7166107(c.433+2736A>G), 7166221(c.433+2850C>T), 7166594(c.434-2921T>G), 7166875(c.434-2640A>G), 7167207(c.434-2308G>A), 7167234(c.434-2281T>A), 7167367(c.434-2148C>T), 7167545(c.434-1970T>G), 7167885(c.434-1630A>T), 7168123(c.434-1392A>G), 7168341(c.434-1174T>C), 7168542(c.434-973T>G), 7168741(c.434-774C>G), 7168843(c.434-672T>C), 7168873(c.434-642G>C), 7169117(c.434-398T>G), 7169138(c.434-377T>C), 7169351(c.434-164A>G), 7169451(c.434-64G>A), +1kb 7170103(c.14969T>C), 7170304(c.15170T>C), 7170328(c.15194A>G), 7170330(c.15196T>C), 7170675(c.15541C>T), 7170773(c.15639A>G), 7170907(c.15773C>T), 7170949(c.15815A>G), 7171025(c.15891T>C), 7171065(c.15931A>T), 7171074(c.15940C>T), 7171220(c.16086C>G), 7172300(c.17166C>G), 7172504(c.17370C>T), 7172784(c.17650T>C), 7173006(c.17872T>G), 7173061(c.17927A>G), 7173231(c.18097A>G), 7173317(c.18183C>A), 7173347(c.18213T>C), 7173379(c.18245C>T), 7173624(c.18490G>C), 7173856(c.18722T>G), 7173864(c.18730T>G), 7173869(c.18735T>C), 7173923(c.18789C>G), 7173972(c.18838A>C), 7174003(c.18869A>G), 7174047(c.18913C>G), 7174068(c.18934A>C), 7174281(c.19147T>C), 7174473(c.19339T>C), 7174837(c.19703A>G), 7174932(c.*19798T>C),
Insertions	-1kb 7143948 (c.-3691_-3690insTCATCC), 7144250 (c.-3389_-3388insT), 7145571 (c.-2068_-2067insA), 5'UTR CDS 3'UTR INTRON 7148366 (c.101+627dupC), 7153405 (c.102-1675_102-1674insGGA), 7155996 (c.137+728_137+731dupGTTT), 7156519 (c.137+1254dupT), 7156984 (c.137+1714_137+1715insTT), 7156996 (c.137+1725_137+1726insGG), 7158097 (c.138-2795_138-2794insTG), 7161160 (c.309+102dupT), 7164957 (c.433+1587_433+1588insCTA), 7169366 (c.434-149_434-148insC), 7169473 (c.434-42_434-41insAAACG), +1kb 7172820 (c.17686_17687insT), 7174631 (c.19497_19498insT), 7175018 (c.19884_19885insATTTA),
Deletions	-1kb 7143345 (c.-4293delT), 7144348 (c.-3290delG), 7145206 (c.-2432_-2431delAT), 5'UTR CDS 3'UTR 7169909 (c.831delA), INTRON 7148118 (c.101+383_101+386delATGT), 7149765 (c.101+2027_101+2030delTGTG), 7149837 (c.101+2104_101+2107delGGGA), 7149842 (c.101+2104_101+2107delGGGA), 7150538 (c.101+2817_101+2824delGCTTGCTT), 7152236 (c.102-2817_102-2812delTGTTGT), 7153482 (c.102-1587delT), 7156974 (c.137+1704delA), 7157059 (c.137+1789delT), 7157125 (c.137+1855_137+1857delCTA), 7157130 (c.137+1860_137+1861delTA), 7158660 (c.138-2223_138-2221delAAA), 7158834 (c.138-2057delA), 7159843 (c.138-1042delA), 7161546 (c.309+484_309+485delGT), 7164334 (c.433+964delC), 7165271 (c.433+1901_433+1903delTTA), 7165430 (c.433+2064_433+2065delAG), 7166828 (c.434-2684delG), 7166920 (c.434-2594_434-2592delGGA), +1kb 7170862 (c.15729_15732delATAA), 7172620 (c.17487_17491delAAAAG), 7173509 (c.18376delT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000182675)	PFGINHGIELHSDVVEYAKEKLESFIKNSDSFDNQLLDLDYPSKREATGQG*
MSMv4 transcript	PFGINHGIELHSDVVEYAKEKLESFIKNSDSFDNQLLDLDYPSKREATGQG*
homology	100.00 (52 / 52)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Pcmtd1 (ENSMUSG00000051285)
Transcript ID	ENSMUST00000182675


..........TACACCCGGCTGACTTTTTCTTAAAGTGGTTAATAAAGATAAGACTGATA
CTCAATGTATTGTGACAGACACTAGAGAACTCTTTCAGTTACAGATTCTGTAAGGGAAAT
TAGTGAACTCGGCAGGGTAGCACACATCTTTAATCCCAGCACTCCAGAGGCAGAAGCAGA
AGACTCAGGGAAAGTTGGGGCTATATAGAGAAACTCTCTCTCCAAAACAAGAACAAGAAA
ACACAACCTTCATAGGAAGAAGCCATACAGATTACAGTAAAAGAATGTAGAGCACAAAAC
CTGTTGGGTTCCATTTTAGACGATGAAGAGAGCTTGATTGTCAACTGCAGTCATAAGCTC
TCTCCCCCAGCCCTTTTCATGCGAAGTCTTTCAGCCATCATCTTGTGTAAAAAAAAGTAT
GGTGTGAAAAGCATGAAGTTGACTGGAACTCTTAACTGCACTTCTGAGAACCACGAGACT
TTGAATAAAGTGAACCTGGTAAGGTAAAGACACCTCACTTGGGTATGGGCAATGCATATT
TCCTCTTGCTATTCAGGAAGCTGGGGCAGGAAAACCACAAGTTAGCGACTAGCTTGGGCT
ACATGGTGATTTGAAGGCCAGTCTGAGTAAGCAAGTTAGTAAACAGAGGGCTGGAGGCGC
AGAGGCTGACTAGGGCACAGTCTGGTTCTAATTTCAGAAGGACAAAGCAACAGCACTGCA
CCTTAAACTTGGGGCTATGTGATCATTTTGACCATAGCGACTTGCCCAAAATCCTGTCTT
TGTATATGTGTAGGTTTTAGCTTTAATCCGTTTTTACATTTGTGCTCACTTCTTCCTTTT
CATAGAAAATAGATGCTGTAAACAGGTTTCCATTCCACTGTAAAATCCAGGTGGTAGCCG
TTTGCATATTTCTTGCCCCTTTTTAATGCTGTTGATACATAATTGCACAGAAATTAGAGT
TCTGGGGCATATCATTAGTATTTTTGTAAAAAATGCTTATATAATTACAG
GTCCTTTTGGAATAAATCATGGGATTGAACTTCATTCAGATGTGGTGGAGTATGCCAAGGAAAAACTGGAGAGCTTCATCAAAAATAGTGATAGCTTTGATAA
GTAAGTATTTATACCTGTAGTTTGG..........GGAATGTTGTTTTTTCTACTCTCAG
TCAGCTCCTAGACCTAGACTATCCGTCTAAGAGGGAAGCTACAGGGCAAGGCTAGGTCACCCTGATCTCCTAGCTGCTTTTCAAAAGAATTAAATGGGCAAGTTGGCAAGGTCCCTGCTGTGAATGAAATCATCTGTCCATCTGAAGAAGAAGATAATCCAACATGCACCTCTAAAGAAAACCACTGCTAAG
GTAAGTGATTGGAATCATGGTCTTA..........TTAAAATGTTTGTTTTCCCACATAG
ATTTGAATTCTGTGAACCTGCATTTGTGGTGGGTAATTGCCTTCAGATAGCTTCTGACAGTCATCAGTATGATCGAATTTACTGTGGAGCTGGAGTCCAGAAAGACCACGAAAACTACATGAAGATCTTACTCAAAGTTGGGGGCATATTGGTCATGCCTATAGAGGATCAG
GTACTTTTACTGTCCTGAATTTGTC..........TTCTTTCTTGTTTCACTCCAAATAG
TTGACACAGATTATGCGGACTGGACAAAACACTTGGGAAAGTAAAAATATCCTTGCGGTTTCCTTTGCACCACTAGTACAGCCTAGTAAGAATGATAATGGCACACCGGACTCTGTGGGGCTCC
GTAAGTAGATATTTGAACCCAGAAT..........GTTTCTTTTTTGTGTTTGTTTGTAG
CCCCGTGTGCTGTCAGGAATCTCCAAGACTTGGCTCGTATTTACATTCGACGTACACTTAGAAACTTCATAAATGATGAGATGCAGGCCAAGGGGATTCCACAAAGGGCTCCACCCAAGAGGAAAAGAAAGAGAGTCAAACAGAGAATTAATACTTACGTATTTGTGGGTAATCAGCTTATCCCTCAGCCTCTAGACAGTGAAGAGGATGAAAAAATGGAAGAAGACAGCAAAGAAGAAGAGGAGAAAGAACACAGCGAAGCCATGAAGCGCGAGGAACCACCTCAGAACCTACTGAGGGAAAAGATAATGAAGCTGCCACTCCCAGAGTCTTTAAAGGCTTACTTGACGTATTTTCGAGACAAATAACTTAAACAAGGAAGAATGCCTACTGATAAACTCCCTTACTCTTGTAAATGTACTATTAATTAGGACTTAGAGAATTACTTCATTAGAATGAATTATTGCAGAAAAAAGTCTAAGTTATTTCTTTTAATAACAGAAATGATGTATTCAGTGATTTAAAAGAGTCTCTTTCCTAAGATCTATTTTTCTTAAATCTT
GAAGAATTACTGTTTTGATCTCAAAGCGGGATGGGTCAATAGTAAGAACTTTGTATACAG
TACTCTTTCTGGTTCTTCATGGATTTGTAGTGTTGGCAATTGAATTTCATTCTATAAGAG
GTTGATACACATATTGTCACACATATAGGCTTATTTAAATTGCCGTTTGCATTTCTGTTA
CTTGAGCTTGCTTATCTAATAAGGAAAGCAAATGCTTGTAGACCTACCTACCTTACTTAT
GTTCTAGACATGTCCCGGGCAACGTATGAGTGCAATACTAATTCAAGATACTGAGTAATT
TAGCTTTAAAAACCACAGACTTCATGAAATTTTACAGACCCGAAACTTAAGCTTTTGAAT
CTATTGCCAAAAGGCATGGGGAAAATTTCTGCTTCTCTCATAGAGATTTTTAAGAGCTAG
TGAATGTTAAAGTAGGAAGTGGCTACTTGACACAACTAGTTTGTATGGGCCCTTTGTGTT
CTCAGTATTTAAAGATAATGAGGTTATCTTAACTATAGAATTTTAAGCGGTAGTATATTT
AGGATTGCTTTTCTATAAATAACTATAAAGTATTAGATTTGGAAAGTCATTCACTGTCTC
ATTTGCTTCTAAATGCAGACTGTGAATAAGTCACATTAAGTGATCAGCACTGCTTAGGGA
CCTCCAGCAGCAGGGGGAATGATATGATCAGTAGAGGCATTTTAGCAGTGGAACTTTTCA
TTAAGTAGATATTTATCTTTGACAAGGTAGGCCACACTGGCCTCATCTGCTCTGAATCTT
TCTAATATAAATAGTCATGGGAGTTGTATGTAGATGCGTTTGTGTTAAAATTTGCTTCAG
AATCAGAGTGGGATCTCTGGGACCTATACCAAGCTCATTATCCTTCATTCTGTATTTTGT
TTCTTTGATAGAATGATGATGATTTTCACTTTTTGCTTAATACTACATCCTTAAGCTACT
TACATAGGGTATCAGTGATACACCAGGCTGTGCATGTTAT..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........TACACCCGGCTGACTTTTTCTTAAAGTGGTTAATAAAGATAAGACTGATA CTCAATGTATTGTGACAGACACTAGAGAACTCTTTCAGTTACAGATTCTGTAAGGGAAAT TAGTGAACTCGGCAGGGTAGCACACATCTTTAATCCCAGCACTCCAGAGGCAGAAGCAGA AGACTCAGGGAAAGTTGGGGCTATATAGAGAAACTCTCTCTCCAAAACAAGAACAAGAAA ACACAACCTTCATAGGAAGAAGCCATACAGATTACAGTAAAAGAATGTAGAGCACAAAAC CTGTTGGGTTCCATTTTAGACGATGAAGAGAGCTTGATTGTCAACTGCAGTCATAAGCTC TCTCCCCCAGCCCTTTTCATGCGAAGTCTTTCAGCCATCATCTTGTGTAAAAAAAAGTAT GGTGTGAAAAGCATGAAGTTGACTGGAACTCTTAACTGCACTTCTGAGAACCACGAGACT TTGAATAAAGTGAACCTGGTAAGGTAAAGACACCTCACTTGGGTATGGGCAATGCATATT TCCTCTTGCTATTCAGGAAGCTGGGGCAGGAAAACCACAAGTTAGCGACTAGCTTGGGCT ACATGGTGATTTGAAGGCCAGTCTGAGTAAGCAAGTTAGTAAACAGAGGGCTGGAGGCGC AGAGGCTGACTAGGGCACAGTCTGGTTCTAATTTCAGAAGGACAAAGCAACAGCACTGCA CCTTAAACTTGGGGCTATGTGATCATTTTGACCATAGCGACTTGCCCAAAATCCTGTCTT TGTATATGTGTAGGTTTTAGCTTTAATCCGTTTTTACATTTGTGCTCACTTCTTCCTTTT CATAGAAAATAGATGCTGTAAACAGGTTTCCATTCCACTGTAAAATCCAGGTGGTAGCCG TTTGCATATTTCTTGCCCCTTTTTAATGCTGTTGATACATAATTGCACAGAAATTAGAGT TCTGGGGCATATCATTAGTATTTTTGTAAAAAATGCTTATATAATTACAG
1	EXON 1	7,147,637	7,147,739	-	2	103	GTCCTTTTGGAATAAATCATGGGATTGAACTTCATTCAGATGTGGTGGAGTATGCCAAGG AAAAACTGGAGAGCTTCATCAAAAATAGTGATAGCTTTGATAA
	INTRON 1 - 2	7,147,740	7,155,079			7,340	GTAAGTATTTATACCTGTAGTTTGG..........GGAATGTTGTTTTTTCTACTCTCAG
2	EXON 2	7,155,080	7,155,271	2	-	192	TCAGCTCCTAGACCTAGACTATCCGTCTAAGAGGGAAGCTACAGGGCAAGGCTAGGTCAC CCTGATCTCCTAGCTGCTTTTCAAAAGAATTAAATGGGCAAGTTGGCAAGGTCCCTGCTG TGAATGAAATCATCTGTCCATCTGAAGAAGAAGATAATCCAACATGCACCTCTAAAGAAA ACCACTGCTAAG
	INTRON 2 - 3	7,155,272	7,160,891			5,620	GTAAGTGATTGGAATCATGGTCTTA..........TTAAAATGTTTGTTTTCCCACATAG
3	EXON 3	7,160,892	7,161,063	-	-	172	ATTTGAATTCTGTGAACCTGCATTTGTGGTGGGTAATTGCCTTCAGATAGCTTCTGACAG TCATCAGTATGATCGAATTTACTGTGGAGCTGGAGTCCAGAAAGACCACGAAAACTACAT GAAGATCTTACTCAAAGTTGGGGGCATATTGGTCATGCCTATAGAGGATCAG
	INTRON 3 - 4	7,161,064	7,163,247			2,184	GTACTTTTACTGTCCTGAATTTGTC..........TTCTTTCTTGTTTCACTCCAAATAG
4	EXON 4	7,163,248	7,163,371	-	-	124	TTGACACAGATTATGCGGACTGGACAAAACACTTGGGAAAGTAAAAATATCCTTGCGGTT TCCTTTGCACCACTAGTACAGCCTAGTAAGAATGATAATGGCACACCGGACTCTGTGGGG CTCC
	INTRON 4 - 5	7,163,372	7,169,514			6,143	GTAAGTAGATATTTGAACCCAGAAT..........GTTTCTTTTTTGTGTTTGTTTGTAG
5	EXON 5	7,169,515	7,170,076	-	-	562	CCCCGTGTGCTGTCAGGAATCTCCAAGACTTGGCTCGTATTTACATTCGACGTACACTTA GAAACTTCATAAATGATGAGATGCAGGCCAAGGGGATTCCACAAAGGGCTCCACCCAAGA GGAAAAGAAAGAGAGTCAAACAGAGAATTAATACTTACGTATTTGTGGGTAATCAGCTTA TCCCTCAGCCTCTAGACAGTGAAGAGGATGAAAAAATGGAAGAAGACAGCAAAGAAGAAG AGGAGAAAGAACACAGCGAAGCCATGAAGCGCGAGGAACCACCTCAGAACCTACTGAGGG AAAAGATAATGAAGCTGCCACTCCCAGAGTCTTTAAAGGCTTACTTGACGTATTTTCGAG ACAAATAACTTAAACAAGGAAGAATGCCTACTGATAAACTCCCTTACTCTTGTAAATGTA CTATTAATTAGGACTTAGAGAATTACTTCATTAGAATGAATTATTGCAGAAAAAAGTCTA AGTTATTTCTTTTAATAACAGAAATGATGTATTCAGTGATTTAAAAGAGTCTCTTTCCTA AGATCTATTTTTCTTAAATCTT
	3' upstream sequence						GAAGAATTACTGTTTTGATCTCAAAGCGGGATGGGTCAATAGTAAGAACTTTGTATACAG TACTCTTTCTGGTTCTTCATGGATTTGTAGTGTTGGCAATTGAATTTCATTCTATAAGAG GTTGATACACATATTGTCACACATATAGGCTTATTTAAATTGCCGTTTGCATTTCTGTTA CTTGAGCTTGCTTATCTAATAAGGAAAGCAAATGCTTGTAGACCTACCTACCTTACTTAT GTTCTAGACATGTCCCGGGCAACGTATGAGTGCAATACTAATTCAAGATACTGAGTAATT TAGCTTTAAAAACCACAGACTTCATGAAATTTTACAGACCCGAAACTTAAGCTTTTGAAT CTATTGCCAAAAGGCATGGGGAAAATTTCTGCTTCTCTCATAGAGATTTTTAAGAGCTAG TGAATGTTAAAGTAGGAAGTGGCTACTTGACACAACTAGTTTGTATGGGCCCTTTGTGTT CTCAGTATTTAAAGATAATGAGGTTATCTTAACTATAGAATTTTAAGCGGTAGTATATTT AGGATTGCTTTTCTATAAATAACTATAAAGTATTAGATTTGGAAAGTCATTCACTGTCTC ATTTGCTTCTAAATGCAGACTGTGAATAAGTCACATTAAGTGATCAGCACTGCTTAGGGA CCTCCAGCAGCAGGGGGAATGATATGATCAGTAGAGGCATTTTAGCAGTGGAACTTTTCA TTAAGTAGATATTTATCTTTGACAAGGTAGGCCACACTGGCCTCATCTGCTCTGAATCTT TCTAATATAAATAGTCATGGGAGTTGTATGTAGATGCGTTTGTGTTAAAATTTGCTTCAG AATCAGAGTGGGATCTCTGGGACCTATACCAAGCTCATTATCCTTCATTCTGTATTTTGT TTCTTTGATAGAATGATGATGATTTTCACTTTTTGCTTAATACTACATCCTTAAGCTACT TACATAGGGTATCAGTGATACACCAGGCTGTGCATGTTAT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Pcmtd1 (ENSMUSG00000051285)
Transcript ID	ENSMUST00000182675

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 52 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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