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Target CDS Information

Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Cross Reference
EMBL AC123072, AC124386, AC127433
GO GO:0003779, GO:0005515, GO:0007010, ...show all
goslim_goa GO:0000902, GO:0003674, GO:0005575, ...show all
MGI_trans_name Dst-005
OTTP OTTMUSP00000068865
OTTT OTTMUST00000116986
UCSC uc007aog.1
UniParc UPI00053BD807
Uniprot/SPTREMBL A0A0A6YX28
Vega_transcript Dst-005, OTTMUST00000116986
Vega_translation 178901, OTTMUSP00000068865
Definition protein_id:ENSMUSP00000141811
translation:
MSSGNASYRCSMSSSADFSDEDDFSQKSGSASPAPGDTLPWNLPKHERSKRKIQGGSVLD
PAERAVLRIADERDKVQKKTFTKWINQHLMKVRKHVNDLYEDLRDGHNLISLLEVLSGDT
LPREKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGNPKLTLGLIWTIILHFQIS
DIHVTGESEDMSAKERLLLWTQQATEGYAGVRCENFTTCWRDGKLFNAIIHKYRYRMCPA
LSHANTSHSFISGVFNRMLLLKGHCVCVREERAR

Chromosome 1
Length
Position(start - end)
129,373
34,006,006 - 34,135,380
Orient to Chromosome plus
Link Location : (1:34006006-34135380)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Transcript ID ENSMUST00000182697
Reports
substitution
cSNPs3
Insertion85
Deletion135
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num2
synonymous substitutions 34116141 (p.Arg129Arg),
non-synonymous substitutions 34135283 (p.His243Arg), 34135324 (p.Arg257Cys),
B6 transcript
(ENSMUST00000182697)
MSSGNASYRCSMSSSADFSDEDDFSQKSGSASPAPGDTLPWNLPKHERSKRKIQGGSVLD
PAERAVLRIADERDKVQKKTFTKWINQHLMKVRKHVNDLYEDLRDGHNLISLLEVLSGDT
LPREKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGNPKLTLGLIWTIILHFQIS
DIHVTGESEDMSAKERLLLWTQQATEGYAGVRCENFTTCWRDGKLFNAIIHKYRYRMCPA
LSHANTSHSFISGVFNRMLLLKGHCVCVREERAR*
MSMv4 transcript
MSSGNASYRCSMSSSADFSDEDDFSQKSGSASPAPGDTLPWNLPKHERSKRKIQGGSVLD
PAERAVLRIADERDKVQKKTFTKWINQHLMKVRKHVNDLYEDLRDGHNLISLLEVLSGDT
LPREKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGNPKLTLGLIWTIILHFQIS
DIHVTGESEDMSAKERLLLWTQQATEGYAGVRCENFTTCWRDGKLFNAIIHKYRYRMCPA
LSRANTSHSFISGVFNCMLLLKGHCVCVREERARE
homology98.91 (275 / 275)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Transcript ID ENSMUST00000182697
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GTGGCGAAGTCAGTGGTCCTGACTGGTGACAGTCTGTCTGACAAGCCGCA
TGTGAGTCCTGTGGGAGTTGCACACACAGCCTGTTGGTGCTGCAGGTACCAGTGTGAGTA
GCTCACTGTTATTACTTCAAATTGGAGCTTGTCTCATTGAGCTGATTTCTGCCTGCAGCT
TGCTGCTTGGGGAATCCATGGCTGTAGCTTCCATCTCAAGGAATTCGAATTCAAGTTATG
TTAGTTTGGCTTCTTCACTGTGAGCCTGGGCAAGTGAAGACTTCCCTTTGATACTCTTCA
GAATTCTTAATCCAGTCTATAGCATCTCTTCCTTGCTGAGGTGTGGGCTGTCTAAATACT
CACAGACACAACCCAATAAGAGGGAAGGAATAAGACCATGTGCCTTTTATGAAAACATTA
TGACCCCGAGGATTCTAAGCGCCTGCAGGATCCAGGAAGAGTAACCTTCAGGCAGAGTGG
TTTTGGTAAAAGTCTGTGTTTCTCATCTTCCTGATGGCTGCAGCTGAGGAGAACTTGGCT
TCCTGTCCCCGCACTGTGTCCTCATTTACATTATTGGCAGCCCTTCGCTGCTGGAAGTTT
AAATTATCTCAAGAACTCTAAACTGAGTTCAGATGTTTGTTTATTGGCGTTGCCTTCGGC
CTTTGAAAGCAGGCTTTTGTGTTCTCCCGGTCTTAAGAAAAGGCTCTTCTCAGAATCAGC
CCTCCCTCCCTCCCTCCTCACCCTTTTCTGGGAACCCGCTTCAGTCTCATGCAGAAAATT
AAATACAGGGCTCAAAACTGGTTAAAAGGAGGCTCCAGTGGCCCCGGCGGCTTGAAACGG
GAAGGAGGTGGGACCCAGCATCCTGTATTTGTGCTGTGTTTATGAAACTTAAAGTTAGTT
GCATTAATGAATTAACCAGAAGGCTAGTAATGGAAAATGTTTCTCCTGTCCTGGTGGGGG
AGCCAGATACTGTAGATTTGTCACAGGAAGGCTGTTGATTCTGGCTTCAT
1 EXON 1 34,005,882 34,006,008 - 0 127
TGTTGGCCCAGTCATTTGTTGAGCCGGTGGCTGGAGCGCAGGCCACACACTTCTTCCTTC
TGGTCTCCATGTATTGGAACAGCTTGCTTATTGTTTCTACGGGAGCAGACTTGGCCAAGA
AGATATG
INTRON 1 - 2 34,006,009 34,006,190 182
GTGAGCCCTGGGGTTCGTTTTGTTT..........GCTTCTCCTGTGTCATCCTCCTCAG
2 EXON 2 34,006,191 34,006,398 0 1 208
AGCTCCGGGAACGCGTCCTACCGCTGTTCTATGTCCTCCTCTGCGGATTTTTCTGACGAG
GATGATTTCAGCCAGAAATCTGGCTCAGCATCTCCGGCTCCTGGAGACACCTTACCCTGG
AATTTGCCCAAGCATGAGAGATCCAAAAGAAAGATTCAAGGGGGCTCGGTGCTGGACCCA
GCCGAGAGGGCTGTGCTTCGGATAGCAG
INTRON 2 - 3 34,006,399 34,086,241 79,843
GTGAGTGGGGGAGGGGATGGAGTGG..........TTATGTTTGTTTGTTTGTTTTCCAG
3 EXON 3 34,086,242 34,086,303 1 0 62
ATGAGCGGGACAAAGTTCAAAAGAAAACATTTACAAAATGGATAAATCAGCATCTCATGA
AG
INTRON 3 - 4 34,086,304 34,113,932 27,629
GTGAGTCGCTCGCTTGCTCACTCGC..........AAAGATGGCCGCTTTGTCGCCGTAG
4 EXON 4 34,113,933 34,114,022 0 0 90
GTTCGGAAGCACGTGAACGATCTCTACGAGGATCTGAGGGACGGGCACAATTTGATCTCC
CTCCTGGAGGTTCTGTCTGGAGACACCTTG
INTRON 4 - 5 34,114,023 34,116,117 2,095
GTAAGTGTGCGCTTTCCTGATTTCT..........CACACCTTCCATTTTCTGTCCTTAG
5 EXON 5 34,116,118 34,116,195 0 0 78
CCCCGGGAGAAGGGTCGGATGCGCTTTCACAGGCTACAGAACGTACAGATTGCACTCGAC
TATTTGAAAAGACGCCAG
INTRON 5 - 6 34,116,196 34,117,431 1,236
GTATGAGATTTTTCAGACTCTAGCG..........GTTTCTCTCTCTCACCTACAAACAG
6 EXON 6 34,117,432 34,117,524 0 0 93
GTGAAGTTGGTGAACATCAGAAATGATGACATAACAGATGGAAATCCTAAGCTGACTTTG
GGGTTAATATGGACAATAATTCTGCACTTTCAG
INTRON 6 - 7 34,117,525 34,135,089 17,565
GTGAGTCCACTTTGTCTTTGTTGCC..........GGTCTGATGCTTCCGTTATATTTAG
7 EXON 7 34,135,090 34,137,135 0 - 2,046
ATATCTGACATCCATGTCACTGGAGAGTCAGAGGACATGTCTGCGAAAGAAAGGCTGCTC
CTGTGGACACAGCAGGCGACAGAAGGCTATGCTGGGGTGCGGTGTGAAAACTTCACTACC
TGCTGGAGAGATGGGAAACTATTCAATGCCATCATTCATAAATACAGGTACAGAATGTGT
CCGGCCTTGTCGCGCGCAAACACAAGTCATTCCTTCATTTCTGGCGTTTTCAATTGTATG
CTCCTGTTGAAGGGGCACTGCGTGTGCGTAAGAGAGGAAAGGGCCAGAGAAAATGAAAGA
CAGCACTGGCCCACAGCTGAATCAGTACTCTAAACTGTAACACACACACACACACACACA
CACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGACAGACAGAGA
CGGGCAGAGCAGCAGAGTGGTGTTATATCTGTATATCTGGAATATATATATATATATATA
TATACACATACATATATATGTATGCACACACACACACACACACACACACACACACACCCC
TTAGCAGAAAGTAAGCTCAGATGCCTGTAATCTGCAGGTCAGTGATCTAGTTTATCTACA
GGTTACCCATGAGCAGACAGGCAAAGGTTCATAGTTCACAAGCTTAACAAGGCGTGAAAC
TCCAGGTCGTACCACTTTGCCATGCTGAGGGGTGACTGGGCAGCAGACTTGGGGTTGGTG
AACAGTTTTCCTGTGAAAATTACGAAGTCTTGCCGTTAACAATGAAGTGACAGTGAGTTT
ATAACAAGCATTGCTATAAACACTGGTTAATTTGGTTCTCACACCATCTTTGTCACCCCT
GGTTATATATGAAGCCAAGACACTGGGTAATATTTGCCTAGCCACAAGACTAGTGAGTGG
CACCCTTGGGATTCAGACGTGGCAGGCAGGCTCTCGAGTGTGTGCTTTTACTGTCAAACT
GGAAATTAAACCCACTTAAAATGTTCATTGACAACTCTGGGTTTAACCTTGGTTATTTTC
TTTGATTGTCCAAAGATTGTATCATATTGAAGAACACATATATTTACAAACAGATTAAGT
CTAAGCTATAAACTTATAAAACTTAAAAAGGTATTGAGTATAATAAAAATCATACAAAAT
AAGTAATGAACTATTCCGGTATCCACACTCAACAGCCCCTATGCTTAAGCAGTCTGATAT
TATGTCCTTCCGTTATGGAACACTCTTTAAACAGAGGTGAGTACACGCACGTTCTGAATT
AAGACGAAAGCCTGGGTCCACTCGCCTGCCTTGCTCACTGAGTATCTCGGTGCTGAGGGC
ATTTCCACTGTTATCCACCTGTCCCAGGGAGACAAGACTGGGGTACCGTGGAGCTCTTTC
TCTGAATCTTTTTAGGTGGCATAGAAATGTTTTTAGAGGCTAGCTTAAGAAATATCTGTA
TTGGCCCTGGTGGCACATACTTGGAATGTCAGCACTCAGGAAGCCGAGGCAGGAGGCTCA
TACATTTGAAACCACTCTGTGATCCAGAGCAAAACCTTGTCTCTAAATAAATAGGTGGGA
GGGAGGGTGGATGAGTGGGTGGGTGGGTAAGTAGCTTAAACTCACTGTCATTGCTTTTGG
TTAGAAATGGGATCTATTTTTTAATTTATGTGCATGAGTGGTTTGGGTGTTTGTTATGTA
GCACTAGCATACCCCGTGTTCTCGGGGTGGGGGGTGAAAAGAGTGGGGTTATACATCGCT
GTGTGAGTAGTCAGTTCTCTGGAAGACATCAGCCTGCTCATAGCCATTGAGCCATCTCTC
TCCAGCCCAGGAATCAGAATTGTAGGTTTTTTTTCTTCACTAGAATTCCTGGTAGAATTG
AAAATAGCAGCTCTAAATGCATGCAAGGTCTCTGTTGCTCAAGGTCTGTTGTAGGATCAT
GTGCCCCATAGTTGGTTTCTTACATAAAAAGCCTTAATTCTGTAAGACTTATCTTAAAGT
CTTTGGGCCTTTCTTAAGAAAACAGTTGAGTTCTTTTCTTCCAGTGTGTGTAAGAATTAA
ACAGCT
3' upstream sequence
AAAAAAAAAAAAAAAATTAAACAGCTAGGCTGGACTTGCACATTTCTTAATTAATATCTT
AATTCATTCCATATGCAAGAGGCCAAGTAATAAGCAAGGAAAATTTCACCTTACGTGGGT
TTGGGGTATTAACAACCGTAGGAACTTAGGAGCAGTGTTTCATTTTATAGGTGGTTTTAC
ATAATTACTCCCATATGCTTTTAAGGTATTTAAGTTTGCTGTGGAATCCTCTATTTAGTG
GGGTTTTATCCTTTGTATTTATTTAGATAAGATGCTGGACCTCTTATTGGATCTCATTTG
GCTTCAGTAATGTTATCTGAGCTAGTAGGTGGGCCTGGGTTCTAAGCAAATGAGGACCTT
TAGAGGTGGTGATATCTGGCTGCAGTAGGTAGTAAATGGTTGCAGTGGCTGGGGGAGGTG
GCTGCAGTGGCTGGGGCAGGCAGGCAGCTGCAGTGTCCAGAAAGCTTTAAGTTGTGTAGG
TCAGCTTCTATACGTAATAGAAAGACTAGGGGTTAAAAATGAAAATATATACTGTCTGTC
ATCACAAAGTAGGCAAGTATTACTTTACATAAGAGACTTATTAAGGCTTTCTTATATAAG
ATCTCCTAAGGAAATAAATGCAGAGTCACTGCAGATTCAGTAGGTTTCCCTATTGCATTT
GCAAATGTACTTGGGTTTTGTTGTCCCTCAGCACCACCATCCCCCATCCCCGTGCTCAAA
ATTTTGGATTAATACAAACTGCATTGTGAGAAGCCATTGTTGGGGTGAATCACTTCAGAG
AGTCTACAGCAATGTTTAGTAGTATTGTCATCTAGAATATCTACAAGAAACAGGTTTGCT
AACCTAAGTAAACAGTATTTAATTAACAGGTCAATATCCTAAGATTTTTACATAGTTTAG
TTTTCTGATTTTTATGTCCAAAGAACTATTATATGAAGTTGAATAAAAAGTAATTTTTAA
GGGTAGCATAGACTTTGTAATTTGAAATTGTGCACAGAGG..........

Sequence Detail Report

Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Transcript ID ENSMUST00000182697
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 275 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information