top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Cross Reference
GO GO:0005509, GO:0005515, GO:0007050, ...show all
goslim_goa GO:0000902, GO:0003674, GO:0005575, ...show all
MGI_trans_name Dst-010
OTTP OTTMUSP00000065439
OTTT OTTMUST00000116997
UCSC uc007aop.2
UniParc UPI00033353FB
Uniprot/SPTREMBL S4R2A8
Vega_transcript Dst-010, OTTMUST00000116997
Vega_translation 178909, OTTMUSP00000065439
Definition codon_start:3
protein_id:ENSMUSP00000138570
translation:
XNDALDRLEELREFANFDFDIWRKKYMRWMNHKKSRVMDFFRRIDKDQDGKITRQEFIDG
ILSSKFPTSRLEMSAVADIFDRDGDGYIDYYEFVAALHPNKDAYKPITDADKIEDEVTRQ
VAKCKCAKRFQVEQIGDNKYRFGDSQQLRLVRILRSTVMVRVGGGWMALDEFLVKNDPCR
AKGRTNMELREKFILADGASQGMAAFRPRGRRSRPSSRGASPNRSTSASSHACQAASPPV
PAAASTPKILHPLTRNYGKPWL

Chromosome 1
Length
Position(start - end)
10,007
34,293,455 - 34,303,463
Orient to Chromosome plus
Link Location : (1:34293455-34303463)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Transcript ID ENSMUST00000183100
Reports
substitution
cSNPs5
Insertion14
Deletion23
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num4
non-synonymous num1
synonymous substitutions 34294515 (p.Arg53Arg), 34295467 (p.Thr117Thr), 34295518 (p.Ile134Ile), 34299768 (p.Thr156Thr),
non-synonymous substitutions 34303018 (p.Ala243Thr),
B6 transcript
(ENSMUST00000183100)
NDALDRLEELREFANFDFDIWRKKYMRWMNHKKSRVMDFFRRIDKDQDGKITRQEFIDGI
LSSKFPTSRLEMSAVADIFDRDGDGYIDYYEFVAALHPNKDAYKPITDADKIEDEVTRQV
AKCKCAKRFQVEQIGDNKYRFGDSQQLRLVRILRSTVMVRVGGGWMALDEFLVKNDPCRA
KGRTNMELREKFILADGASQGMAAFRPRGRRSRPSSRGASPNRSTSASSHACQAASPPVP
AAASTPKILHPLTRNYGKPWL
MSMv4 transcript
NDALDRLEELREFANFDFDIWRKKYMRWMNHKKSRVMDFFRRIDKDQDGKITRQEFIDGI
LSSKFPTSRLEMSAVADIFDRDGDGYIDYYEFVAALHPNKDAYKPITDADKIEDEVTRQV
AKCKCAKRFQVEQIGDNKYRFGDSQQLRLVRILRSTVMVRVGGGWMALDEFLVKNDPCRA
KGRTNMELREKFILADGASQGMAAFRPRGRRSRPSSRGASPNRSTSASSHACQAASPPVP
AATSTPKILHPLTRNYGKPWL
homology99.62 (261 / 261)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Transcript ID ENSMUST00000183100
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTTTGTTTTGTTTCTAAGTGGGAGCAGAGCTGCTGTGATTGCTATGCTCT
CACGGAGACCAGGCGATTGTATAAATGAAATGTGGGAGGCCCCTTGCTGTCCCTACCTGG
GACCAGCTGGGAAGCCTAATTGAACAGTTTACCTAGTTCTTAGCTAGGGTTTCCTCCTCT
GCAAAAGAGGATACTCTGTAACAGTCGTCGGTTGGACGGAAGGAGCTAGCACACACTCCT
GGAGCAGTTGCATACTTTCCAGCATGTAATTACCCTCATGAACTTGAGCCTGAATGGAGT
GTGATCTTAGGCCAATCATTTTTCTAGGCCACGTGTAGCCATTTAGTTACATGGGAGGAA
TGCGCTATGCGCATCGTTTTATGCAACTGTGAAGACACTTGTGAAGACAGCCAGATAGGA
GTGTATTAACTCGGTCAACGTGGATGTGTGCATATGAGAGGAAGTGTACGTGCTCTGTGG
AGAATGGGTTTGGGGCCTTCTTGGCTTGGTTGTCATTGGTGAAGCATCCCGCTCTGGTTC
TGAGGACGCCACTTTTCAGCCTTCTTCTCTCAGAAGGGCGGGTACCTGGAACCCACTTAA
CGTGCCTCCCTGTGCTACTTCAGCATGGACGTCCACAGAAAACACATTTGAAACATTGCC
TTTACAGAGTTCCCAGTGTTTAAGTGGCCCCCGCCGAGATGCATTTTGGCAGCACATGAG
ATCAGAATGTGAACCTTGATAAGAATAGCTAGGGTGGGGTGCTTGCCTTTGCCGTACACA
GTAGTTAAAGTCAGTCTCCATTAGGAGCTAAAATCTCAGTGCCTGTCAGCACGCCAGACG
TTCCGCCATCCTGACCTGCAGTTGTGTTTTACCAGGGAAACGCTTCCCAGCCTCGGGCTT
CTATCCATCTGGCTCACAGACGCAAATCGAGACCAAGAACCCCAGGGTTAACCTGCTGGT
GAGCAAGTGGCAGCAGGTCTGGCTCCTGGCCTTGGAAAGGAGGAGGAAGC
1 EXON 1 34,293,455 34,293,483 - 0 29
TCAACGACGCCCTGGACAGGCTGGAGGAG
INTRON 1 - 2 34,293,484 34,294,383 900
GTCAGAAACTCCCGCTCTGTCCCTG..........CAGCCAAAACTTTCGCTTTTTCTAG
2 EXON 2 34,294,384 34,294,546 0 1 163
CTGAGGGAATTTGCCAACTTCGATTTCGACATCTGGCGGAAAAAATACATGAGGTGGATG
AACCATAAGAAATCGAGAGTGATGGATTTCTTCCGGAGAATTGATAAGGACCAGGATGGG
AAGATCACTCGGCAGGAATTCATCGACGGGATTCTCTCCTCCA
INTRON 2 - 3 34,294,547 34,295,153 607
GTAAGTGCCGAGACGTGCAATAGCC..........ACTAGCACCGCTTGGTACATTGCAG
3 EXON 3 34,295,154 34,295,308 1 0 155
AGTTTCCTACCAGTCGCCTGGAGATGAGCGCCGTGGCAGACATCTTTGACAGAGATGGTG
ATGGGTACATTGACTACTATGAATTCGTGGCCGCTCTGCATCCAAACAAAGATGCGTACA
AACCCATCACGGATGCTGACAAAATTGAGGACGAG
INTRON 3 - 4 34,295,309 34,295,461 153
GTACTCACTGTTGGCCTTCTGCTGC..........AATGTCATACCTTTGTCTTTGACAG
4 EXON 4 34,295,462 34,295,536 0 0 75
GTCACGAGGCAGGTAGCCAAGTGTAAGTGTGCCAAGCGATTCCAAGTTGAACAGATTGGT
GATAACAAATACAGG
INTRON 4 - 5 34,295,537 34,299,720 4,184
GTGAGTGTCTCAGTTGACTCCTGCC..........GGTCCTTTCTCTCTCTGCTGCCTAG
5 EXON 5 34,299,721 34,299,838 0 1 118
TTTGGAGACTCCCAGCAGCTGCGACTGGTTCGGATCCTGCGAAGCACGGTGATGGTTCGT
GTTGGAGGCGGATGGATGGCTCTGGATGAGTTCTTAGTGAAAAATGATCCCTGCAGGG
INTRON 5 - 6 34,299,839 34,302,829 2,991
GTAAGGAGACCCTTTTGTCGAGCTG..........CTTTTGCCGCCTGCGTGCAATCCAG
6 EXON 6 34,302,830 34,303,032 1 0 203
CTAAAGGAAGGACCAACATGGAGCTGCGGGAAAAGTTCATCCTAGCAGACGGTGCCAGCC
AGGGTATGGCCGCCTTCCGACCGCGAGGCCGCCGATCTCGCCCTTCATCCAGAGGAGCTT
CCCCCAACAGATCCACTTCCGCGTCGAGTCATGCCTGCCAGGCAGCCTCCCCACCGGTGC
CTGCTGCCACCAGCACACCCAAG
INTRON 6 - 7 34,303,033 34,303,420 388
GTAGGACTCCAGGCTGTGGCCCTCT..........TTTGATGTACCGTTGTTCCATGCAG
7 EXON 7 34,303,421 34,303,463 0 - 43
ATTCTCCATCCTTTAACACGCAATTATGGTAAACCATGGTTGG
3' upstream sequence
CAAACAGCAAAATGTCAACTCCCTGTAAAGCAGCAGAATGCCCCGACTTTCCCGTGTCAT
CCGCAGAGGTATCGTAAGGCCCCAGACTGCAGTCTTAACAGCCTTCTCTGGCTGACACTC
ACCTACTAACACCGCCTCACCACTGCCCTGATGTGTGCACTTCTGATAATACTACATCTT
CCTGTTAACTTCCTGCAAAACCGTTTCTCAGGGGACATGAGAGTAAGGGGTACTGGGGAA
AGACAGCAGCGGTTTGACATGCCCACACCTTGAGGCTGTATACGCACACTCCTGGGCTTT
TGCTCTCTGTATATACAAGGCTTATGAATATTTTCTAATGTTGGTGGAATGCACTTGCCA
ATAGACAATATGAGCTAGAAACTTAGCATGCTCCCTTAGATGAAATCAGAAGCAATGTCA
TTTGTAGGGGAGTTACTTAGGAACAGAATTTTAGCAAGTGTCCACCATGGATGGTCCCTC
TTAGTGCATTCATTTCTGCTTGTTCATGCCGGCCCGGTGTGACGTGGTTCTCAGTTCTAA
GTGCAGGCATCACAGGGATAGGGGTGGGAATATGGAAAGCTAACTGTCATTTTCAAAGGA
TGTCTGTATTATATTTTAGTAATTGATATTACTTGAGCATTCTGTAACGTCTCAAAATTG
CCATTGGTACAGAGAGAAGATATTTAGGGAATATAACATTTGCCAAGATTAACTCACATT
TAAATTGTTCACATTTCAACTGAAAACCAGCCATCTATTTTTCCAAAGAAACGTCTATGA
ATTGATCAGTGTGGGCACCGTCTCACGTGCTTGATCCAAACCCCAGTAACAGGGAGGAGT
TCCTAGCCATCCTTTCTTGGAAATGAGGAGTTATTTTTGGCCTAATGGTTAGGAAGAAAG
CCAAGGCCCTTTAGAAAAGAAGTACTTTTAAAAAGCCCGTGAGGGTTTTCATGGCTGGTT
CCCAGTTACTTAATCCTCACATTAATTACAATAGGTAGAC..........

Sequence Detail Report

Gene Symbol (Gene ID) Dst (ENSMUSG00000026131)
Transcript ID ENSMUST00000183100
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 261 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information