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Target CDS Information

Gene Symbol (Gene ID) Rims1 (ENSMUSG00000041670)
Cross Reference
GO GO:0005515, GO:0006461, GO:0006887, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005623, ...show all
MGI_trans_name Rims1-002
OTTP OTTMUSP00000066641
OTTT OTTMUST00000120202
RefSeq_mRNA NM_001012623.1, NM_001012624.1, NM_053270.1, ...show all
RefSeq_peptide NP_001012641.1, NP_001012642.1, NP_444500.1, ...show all
UCSC uc029qni.1
UniParc UPI0004621193
Uniprot/SPTREMBL A0A087WSA4
Vega_transcript OTTMUST00000120202, Rims1-002
Vega_translation 178830, OTTMUSP00000066641
Definition codon_start:3
protein_id:ENSMUSP00000140963
translation:
XSQRISDSDISDYEVDDGIGVVPPVGYRASARESKATTLTVPEQQRTTHHRSRSVSPHRG
DDQGRPRSRLPNVPLQRSLDEIHPTRRSRSPTRHHDASRSLADHRSRHAESQYSSEPDSE
LLMLPRAKRGRSAECLHMTSELQPSLDRARSASTNCLRPDTSLHSPERERGRWSPSLARR
RPASPRIQIQHASPENDRHSRKSERSSIQKQSRKGTASDADRVLPPCLSRRGYAIPRATD
QPVIRGKHTTRSRSSEHSSIRTLCSMHHLAPGGSAPPSPLLTRTHRQGSPTQSPPADTSF
GSRRGRQLPQVPVRSGSIEQASLVVEERTRQMKMKVHRFKQTTGSGSSQELDHEQYSKYN
IHKDQYRSCDNASAKSSDSDVSDVSAISRASSTSRLSSTSFMSEQSERPRGRISSFTPKM
QGRRMGTSGRAIIKSTSVSGEIYTLEHNDGSQSDTAVGTVGAGGKKRRSSLSAKVVAIVS
RRSRSTSQLSQTESGHKKLKSTIQRSTETGMAAEMRKMVRQPSRESTDGSINSYSSEGNL
IFPGVRVGPDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSL
TQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIV
WGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLTPLTRRASQSSLES
SSGPPCIRS

Chromosome 1
Length
Position(start - end)
144,420
22,288,422 - 22,432,843
Orient to Chromosome minus
Link Location : (1:22288422-22432843)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rims1 (ENSMUSG00000041670)
Transcript ID ENSMUST00000185942
Reports
substitution
cSNPs7
Insertion89
Deletion148
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num5
non-synonymous num2
synonymous substitutions 22346359 (p.Leu470Leu), 22346411 (p.Ser452Ser), 22373400 (p.Arg394Arg), 22397476 (p.Pro311Pro), 22397500 (p.Arg303Arg),
non-synonymous substitutions 22373381 (p.Met401Leu), 22427492 (p.Ala108Val),
B6 transcript
(ENSMUST00000185942)
SQRISDSDISDYEVDDGIGVVPPVGYRASARESKATTLTVPEQQRTTHHRSRSVSPHRGD
DQGRPRSRLPNVPLQRSLDEIHPTRRSRSPTRHHDASRSLADHRSRHAESQYSSEPDSEL
LMLPRAKRGRSAECLHMTSELQPSLDRARSASTNCLRPDTSLHSPERERGRWSPSLARRR
PASPRIQIQHASPENDRHSRKSERSSIQKQSRKGTASDADRVLPPCLSRRGYAIPRATDQ
PVIRGKHTTRSRSSEHSSIRTLCSMHHLAPGGSAPPSPLLTRTHRQGSPTQSPPADTSFG
SRRGRQLPQVPVRSGSIEQASLVVEERTRQMKMKVHRFKQTTGSGSSQELDHEQYSKYNI
HKDQYRSCDNASAKSSDSDVSDVSAISRASSTSRLSSTSFMSEQSERPRGRISSFTPKMQ
GRRMGTSGRAIIKSTSVSGEIYTLEHNDGSQSDTAVGTVGAGGKKRRSSLSAKVVAIVSR
RSRSTSQLSQTESGHKKLKSTIQRSTETGMAAEMRKMVRQPSRESTDGSINSYSSEGNLI
FPGVRVGPDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLT
QKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVW
GDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLTPLTRRASQSSLESS
SGPPCIRS*
MSMv4 transcript
SQRISDSDISDYEVDDGIGVVPPVGYRASARESKATTLTVPEQQRTTHHRSRSVSPHRGD
DQGRPRSRLPNVPLQRSLDEIHPTRRSRSPTRHHDASRSLADHRSRHVESQYSSEPDSEL
LMLPRAKRGRSAECLHMTSELQPSLDRARSASTNCLRPDTSLHSPERERGRWSPSLARRR
PASPRIQIQHASPENDRHSRKSERSSIQKQSRKGTASDADRVLPPCLSRRGYAIPRATDQ
PVIRGKHTTRSRSSEHSSIRTLCSMHHLAPGGSAPPSPLLTRTHRQGSPTQSPPADTSFG
SRRGRQLPQVPVRSGSIEQASLVVEERTRQMKMKVHRFKQTTGSGSSQELDHEQYSKYNI
HKDQYRSCDNASAKSSDSDVSDVSAISRASSTSRLSSTSFLSEQSERPRGRISSFTPKMQ
GRRMGTSGRAIIKSTSVSGEIYTLEHNDGSQSDTAVGTVGAGGKKRRSSLSAKVVAIVSR
RSRSTSQLSQTESGHKKLKSTIQRSTETGMAAEMRKMVRQPSRESTDGSINSYSSEGNLI
FPGVRVGPDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLT
QKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVW
GDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLTPLTRRASQSSLESS
SGPPCIRS*
homology99.73 (729 / 729)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Rims1 (ENSMUSG00000041670)
Transcript ID ENSMUST00000185942
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACAATTAATAT
TCATAAGTATTATGACTAATAAATATGTATTTTAATATTGGGCTTGAATGATTTTTAAGC
ATTCTGGGCATGCCAAATGTTGCCATGGTTGGTGTTTGAGCTTATCCTCTTCCATACAGG
ATGAATTGTAGGTACTTCACTATCTGCTTTCAGAGTAGCATTTAAAATGAGAAAGGATAT
AAGTCAAACAAGGAAGGATATAAGTAAAATTTTATTTCATCACTGTCCTTCAGTGTAATT
GTATATGGGAAGAAATTTTGTTTAAAAATATGTAATATTTTTTGAAACAAACCCATTTCT
AGAAAAGCCAGACCTTGCTTACTATAAATTATTCTTGTTCAACTATGTCCTTTGCATGTC
GTAAACCGAGTGGACACACAGAGGTATCTGTTTGCCTTACTGTTGTGCAG
1 EXON 1 22,432,772 22,432,843 - 1 72
GATCTCAGCGAATCAGTGATAGTGACATCTCAGATTATGAGGTTGATGATGGTATTGGCG
TAGTGCCTCCAG
INTRON 1 - 2 22,428,622 22,432,771 4,150
GTGCGTGGTGAAAGGCATGGCTCCA..........AGTTTTATCTGTATGCTCTTGTCAG
2 EXON 2 22,428,465 22,428,621 1 2 157
TGGGTTATAGAGCTAGTGCTAGAGAGAGTAAAGCCACCACGTTAACAGTGCCAGAGCAGC
AAAGAACCACACATCACCGCTCACGTTCCGTGTCTCCTCATCGCGGCGATGATCAGGGAA
GGCCTCGTTCACGTTTACCAAATGTGCCATTACAGAG
INTRON 2 - 3 22,427,588 22,428,464 877
GTAGGTCTGGAGCAGGCTTAATGCT..........AATGAAGTTTTGTGGCACATTTTAG
3 EXON 3 22,427,462 22,427,587 2 2 126
GAGCTTAGATGAAATCCATCCAACACGAAGGTCACGTTCTCCAACCCGACACCATGATGC
CTCCCGAAGCCTGGCCGATCACAGATCACGACATGTGGAAAGTCAGTATTCATCAGAGCC
AGACAG
INTRON 3 - 4 22,425,934 22,427,461 1,528
GTACTTTTCCCAAGTAGAATCTCAG..........CTCACCACCCATCCTGTCTGTGCAG
4 EXON 4 22,425,871 22,425,933 2 2 63
TGAGCTTCTCATGCTGCCCAGAGCAAAACGAGGACGAAGTGCAGAATGCCTACACATGAC
CAG
INTRON 4 - 5 22,421,831 22,425,870 4,040
GTAAATACAGGGATTTGGTTCTGGT..........TCTACCACTGGATGTAATGCACTAG
5 EXON 5 22,421,741 22,421,830 2 2 90
TGAACTGCAGCCCTCTCTTGACAGGGCTAGGAGTGCTAGTACCAACTGCTTGAGACCAGA
TACTAGTTTGCATTCACCAGAACGAGAAAG
INTRON 5 - 6 22,412,295 22,421,740 9,446
GTATAAAATAAAGACTTTCTGAATT..........CCTGTCTTGTTCACTGGGCAAACAG
6 EXON 6 22,412,211 22,412,294 2 2 84
GGGTAGATGGTCCCCCTCCCTAGCTAGGAGGCGACCTGCTAGCCCCAGGATTCAAATCCA
GCATGCGTCTCCGGAGAATGACAG
INTRON 6 - 7 22,404,516 22,412,210 7,695
GTACAAGTCACCTCCTCACAGACAA..........TTTCTTTAACATTTCATCCCCACAG
7 EXON 7 22,404,444 22,404,515 2 2 72
GCACTCCAGAAAGTCTGAAAGATCTAGCATCCAAAAACAGTCTAGGAAAGGCACAGCCTC
TGATGCAGACAG
INTRON 7 - 8 22,398,782 22,404,443 5,662
GTAGGCTTGATGTTGTGCAGTGCTG..........ATCTTTTTTGGCACTAATGTTTTAG
8 EXON 8 22,398,599 22,398,781 2 2 183
GGTTCTCCCACCATGCCTTTCTAGAAGGGGATACGCAATCCCAAGAGCAACCGATCAACC
GGTCATTAGGGGAAAGCATACCACTCGCTCCCGGTCGAGCGAGCACTCTAGTATCAGAAC
CCTGTGTTCTATGCACCACCTTGCCCCCGGAGGGTCAGCGCCGCCTTCTCCGCTTCTGAC
AAG
INTRON 8 - 9 22,397,564 22,398,598 1,035
GTTGCTATTCAGTGTCCAGCCCAGC..........CCCTCCCTTTGCTGTTTGCCTACAG
9 EXON 9 22,397,451 22,397,563 2 1 113
AACGCACCGACAAGGAAGCCCCACCCAGTCACCTCCAGCTGACACATCCTTTGGCAGTCG
CCGTGGAAGACAGCTCCCACAGGTGCCAGTCCGAAGCGGCAGTATAGAACAAG
INTRON 9 - 10 22,379,541 22,397,450 17,910
GTATCCAAATAAGCGACATCTTTGT..........AGCTTTCTGTTGTGTGTTTTTGCAG
10 EXON 10 22,379,428 22,379,540 1 0 113
CGAGCTTAGTAGTGGAGGAACGAACGAGACAGATGAAAATGAAGGTACACCGATTTAAGC
AGACAACAGGGTCTGGGTCTAGTCAAGAACTTGACCACGAGCAATACTCCAAG
INTRON 10 - 11 22,373,511 22,379,427 5,917
GTAAAATTAGTAGTATCCAGCCAAT..........ATCCTCTCTTGTGTTTAATCTTTAG
11 EXON 11 22,373,344 22,373,510 0 2 167
TACAACATACATAAAGATCAGTACAGAAGCTGTGATAACGCGTCCGCCAAGTCATCAGAT
AGTGATGTCAGTGATGTGTCCGCCATTTCCAGAGCCAGCAGCACCTCACGGCTCAGCAGC
ACAAGCTTTCTGTCAGAGCAGTCTGAGCGCCCCAGGGGCAGGATCAG
INTRON 11 - 12 22,346,529 22,373,343 26,815
GTGAGTTGGCAATGCTGTCTCTGTG..........ATATGTTTTTACTTTGTAAATATAG
12 EXON 12 22,346,293 22,346,528 2 1 236
TTCATTTACCCCCAAAATGCAAGGCAGACGGATGGGGACTTCAGGAAGAGCCATCATCAA
GAGCACCAGTGTAAGTGGAGAGATATATACACTGGAGCACAATGACGGCAGCCAGTCGGA
CACGGCCGTGGGTACCGTTGGAGCTGGTGGAAAGAAGCGGAGGTCCAGCTTGAGTGCCAA
AGTGGTAGCCATTGTGTCTCGAAGAAGCAGAAGCACATCACAGCTCAGCCAGACAG
INTRON 12 - 13 22,296,997 22,346,292 49,296
GTGAGCACAGTGCGCTCCGCCTCCC..........CCTGTTTCCACTCTCCCCCCATCAG
13 EXON 13 22,296,858 22,296,996 1 2 139
AGTCCGGCCACAAGAAGTTAAAAAGCACCATTCAGAGGAGTACGGAAACGGGAATGGCGG
CTGAAATGCGGAAGATGGTGAGACAGCCCAGCCGGGAGTCCACGGATGGCAGCATCAACA
GTTATAGCTCAGAAGGAAA
INTRON 13 - 14 22,292,935 22,296,857 3,923
GTAAGTGACATGATGTCTTTGCTGC..........TTTTGCTCTTATGTGTTTGCTATAG
14 EXON 14 22,292,822 22,292,934 2 1 113
CTTAATATTTCCTGGAGTTCGCGTGGGACCTGACAGTCAGTTCAGTGATTTCCTTGATGG
ATTGGGGCCAGCCCAGCTTGTCGGCCGCCAAACCCTCGCCACCCCAGCCATGG
INTRON 14 - 15 22,291,115 22,292,821 1,707
GTAAGGATTCTTTTTCTGCAGTTTA..........CATTTTCTTTGGTCTTCACTTGCAG
15 EXON 15 22,291,013 22,291,114 1 1 102
GCGATATCCAAATCGGGATGGAGGATAAGAAGGGTCAGTTGGAGGTTGAGGTTATCAGAG
CCCGGAGCCTTACACAAAAACCTGGCTCCAAATCTACACCTG
INTRON 15 - 16 22,290,200 22,291,012 813
GTAAGGAAAAGTTGCACCATTTTGG..........TATATGTCTGCTCATCTTGGTCTAG
16 EXON 16 22,290,060 22,290,199 1 0 140
CTCCCTATGTGAAAGTTTATCTTTTGGAAAATGGAGCCTGTATTGCCAAAAAGAAGACAA
GAATTGCACGGAAAACTCTCGATCCCTTGTATCAGCAGTCCCTGGTTTTTGATGAAAGTC
CACAGGGTAAAGTTCTTCAG
INTRON 16 - 17 22,288,641 22,290,059 1,419
GTCAGTAAACTTTGCTTGGTTAATT..........TTACAATATATTTCTCTATCTGCAG
17 EXON 17 22,288,422 22,288,640 0 - 219
GTGATTGTCTGGGGTGACTATGGAAGAATGGACCACAAATGCTTTATGGGTGTGGCTCAA
ATCTTGTTGGAAGAACTTGATCTGTCCAGCATGGTGATTGGATGGTATAAATTGTTCCCT
CCATCCTCCCTGGTGGATCCCACACTCACTCCCCTGACCCGCCGGGCTTCCCAATCATCA
CTGGAAAGTTCGTCTGGGCCTCCCTGCATCCGGTCATAG
3' upstream sequence
TAAACTCCTAACCTTCCAGCCAAACTCTACATTTCAGGATAATTATCAGAACCAGATATT
TCGTGATCAAGAGCATTGTTGGAGACAGACAATCAACTTGTGTTTTGCCTGTAGTAGTTG
TTCGATAATTGTGTCCCAATTGTTGTTTAAAACATGGCTTCGTATGACAGAACAAGGCAG
TCAATCACATTGCAGTAAGAATCGACATGCTAGTGAGAGCCACTGATACTTCTTGCAAAT
AGGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAA
GGAAACCTCAAGTTCACACACACACCAAACTGAACAAACTGGAAAGTCTCACTCTGTGAA
AAGGTGTACTTCACACATTTCTGCACAGACCACAAGCAGTGTTGTTTCCCTGGTGTTTGA
GATTCTTGAGTTCTTCTGAGTGCTTTCCTTGTTTGAGCGTTGTTTGCTGGTTTTTTTCCC
CATTGTCTCTCTTTCTCTGTCTTCACTATATTTGTTCTTTCCACTAGTTTGTTTGTTTTG
TTTTGTTTTGTTTTTCATTTTTTTGTCTTTGTCTTTCTCTGCTTCGTCATAACAGAGTTA
TGGTGTTCACAGAGACCCTTCCTTTCTTTTTTCCAAAAGCACCAAAAAAGGGCTGAAGCC
GTCTCTGTAGCATTTTCCCCAAAGTTTTCAAAAGCTGGGCAAGGTAAAGCCAGGGAAGGG
TATCAGCGGCAGCCAGTTTACAGTTCTTCCAAGTCTTGTATGTGGAATTTCCACACACAC
ACACACACACACACAGACAGTAAAAATCATCACCCAAACTAGTAGTTGCAGAATCACTTC
TCAGTGAAGAGCGTATCTGTTCCCATTCCAGATAATTCATTGCTATTTTCCATTGTTTGG
CACAGAAGACTTTGAAGGACCTAGAACTGATGCTGGGGATGAAGGCTAACCACATAGTAG
TGCTTTGGAAACCCTTTCCGAAATGCCTTTTTACTTCCTG..........

Sequence Detail Report

Gene Symbol (Gene ID) Rims1 (ENSMUSG00000041670)
Transcript ID ENSMUST00000185942
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 729 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information