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Target CDS Information

Gene Symbol (Gene ID) Lmbrd1 (ENSMUSG00000073725)
Cross Reference
EMBL AC116997, AC153019
GO GO:0005158, GO:0005764, GO:0005886, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Lmbrd1-004
OTTP OTTMUSP00000066758
OTTT OTTMUST00000120743
UniParc UPI0004621190
Uniprot/SPTREMBL A0A087WS60
Vega_transcript Lmbrd1-004, OTTMUST00000120743
Vega_translation 178854, OTTMUSP00000066758
Definition protein_id:ENSMUSP00000140911
translation:
MAAAAAELVIGWCIFGLLLLAILAFCWVYVRKYQSQRESEVVSTVTAIFSLAVALITSAL
LPVDIFLVSYMKNQNGTFKDWADANVTVQIENTVLYGYYTLYSVILFCVFFWIPFVYFYY
EEKDEDDASKCTQIKTALKYTLGFVVICALLLLVGGLELEC

Chromosome 1
Length
Position(start - end)
28,188
24,678,757 - 24,706,946
Orient to Chromosome plus
Link Location : (1:24678757-24706946)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lmbrd1 (ENSMUSG00000073725)
Transcript ID ENSMUST00000186096
Reports
substitution
cSNPs0
Insertion21
Deletion37
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000186096)
MAAAAAELVIGWCIFGLLLLAILAFCWVYVRKYQSQRESEVVSTVTAIFSLAVALITSAL
LPVDIFLVSYMKNQNGTFKDWADANVTVQIENTVLYGYYTLYSVILFCVFFWIPFVYFYY
EEKDEDDASKCTQIKTALKYTLGFVVICALLLLVGGLELEC*
MSMv4 transcript
MAAAAAELVIGWCIFGLLLLAILAFCWVYVRKYQSQRESEVVSTVTAIFSLAVALITSAL
LPVDIFLVSYMKNQNGTFKDWADANVTVQIENTVLYGYYTLYSVILFCVFFWIPFVYFYY
EEKDEDDASKCTQIKTALKYTLGFVVICALLLLVGGLELEC*
homology100.00 (162 / 162)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lmbrd1 (ENSMUSG00000073725)
Transcript ID ENSMUST00000186096
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TTTTGACTGCATCCTAAGTGTCTTATTGTCCTAAGGATGGAAGTGTTTAT
TGGGTTCACAGTGCAAGGTTTCAGCGCATTGTTGTGGTGATGTTATAGACAGCAGGAACT
AGAGGTGGCTACTCACATCCAAGGTCAAGCGCAGACAGCAATGAGTTGTGCATGCATGCT
AGGTAAGTCTTCAGTTCTGGTCCAGGGATGTGGAAATGTTACCACCCACATTCAGGGTGG
GGCTTCTCACCTCAGCCCAATTAAAGGAAAAAATCCCTCACAAGCCCACAGGACAATGTA
TTCGAGACAATTTGTCACTGAGTCTTCCGAGATGGTTCTGCATTGTATCAAGCCCACAGA
CAAACGTCCACAATCAAAACTAAACATCACGCCGGGGTTTGTTTATTCAATTTAAATATA
CACTAATACACCACGGGACCCAGGCAAGCATCCCAGGTTTTCCCTCAGCTTCACATAAGA
TTTACAACAATCTCTGTTTTGTTCACTTGAGCATATTATTAGCACCTACAATTCATAGAC
TCGGACATTTTAATTGTATGAAACCATCATGGAAATTCACAGGTACGCGCAGATGGAAAA
AACAAAACAAAACAAAACATCACGTGGTAGCACAGTGCCGTCAAGCAATGACGTGACCTG
GTCATCAGCAAATTATAAAGTCATCTGGGCAGATGACATTCTTTTATTCTGAGTCATTCC
TGCACCAGGATGACTTCTGATTGCATAATGGGATCAAAACCTTGTTTTTGGAAGCAATGA
AAACCCGTAATGTCACTCTACATTCTGAGGCACAGACATAGCCCTACCTCGGTAAAGCTC
CTAGAGTGCCAGCAAGATCAAGTGGCACGCAGCCCGCGCGTGGGCGGGCAGCGTGGTGAC
GTCACGGTGCGTCGGGTGCGCCCCGCCTCGGCTCGGCTGGTCGCCAGGGGACGCTCGCGG
GCCGGGTCTCCTTGGCAACCCTCCGCTCTGCCCCTCCGCCCCTTTAACCT
1 EXON 1 24,678,660 24,678,816 - 0 157
TTAGGCTGCGCAGTTCCGGGTCCCTCTTCGTTCCGTCCCGTCCCGTCCCGTGCCTTCCCT
CCCCACCCCTTTGGGCTTATCCGGACCGGAAGCGAAGATGGCGGCGGCGGCGGCCGAGCT
GGTGATCGGCTGGTGCATCTTCGGCCTCTTGCTCCTG
INTRON 1 - 2 24,678,817 24,685,396 6,580
GTAGGGGAGGCGCTCCGAGTTCTCC..........GGTATTTCTTTTTGCTGTGTTTCAG
2 EXON 2 24,685,397 24,685,573 0 0 177
GCTATTTTGGCCTTTTGCTGGGTCTACGTTCGGAAGTACCAGAGTCAGCGGGAAAGTGAG
GTCGTCTCCACTGTGACAGCCATTTTTTCACTGGCTGTTGCTCTGATCACATCAGCACTG
CTGCCGGTGGATATATTTTTGGTTTCTTACATGAAAAATCAAAATGGCACATTCAAG
INTRON 2 - 3 24,685,574 24,692,940 7,367
GTAATTAGTATTGTGCTATGCGATT..........GCTGTCTCTCTCCTTTTTCTCCTAG
3 EXON 3 24,692,941 24,693,001 0 1 61
GACTGGGCTGACGCCAATGTCACCGTACAGATTGAGAATACCGTTCTGTATGGCTACTAT
A
INTRON 3 - 4 24,693,002 24,704,820 11,819
GTAAGTATCGGCCAGCTTCACTTTT..........AGGCTTTTGTTGTTCCTGCCCACAG
4 EXON 4 24,704,821 24,704,918 1 0 98
CTCTGTATTCTGTCATTCTCTTCTGTGTGTTCTTCTGGATCCCGTTTGTGTACTTCTACT
ACGAAGAGAAGGATGAGGACGACGCCAGCAAATGCACC
INTRON 4 - 5 24,704,919 24,705,976 1,058
GTGAGTGCCTTACGATGGGCTCCTC..........TACTTTCTCCCCTCCTGGTCTCTAG
5 EXON 5 24,705,977 24,706,044 0 2 68
CAAATTAAAACGGCGCTCAAGTACACTTTGGGATTTGTTGTGATCTGCGCTCTGCTGCTT
CTCGTTGG
INTRON 5 - 6 24,706,045 24,706,924 880
GTAAGTTTTGATATTTCAGTGTGCC..........TTACCTGTGTGCCTTATGCCTGCAG
6 EXON 6 24,706,925 24,707,051 2 - 127
AGGCCTGGAACTGGAGTGCTAGAGCGTCCTGAGCCGCCATATGGGTGCTGAACACTGAAC
CTGGCTTCTCTGAAGTGACCTTTAGCCACTAGCCCATAATTTAGTAAATACCTTCTCAAT
CCTTGAG
3' upstream sequence
ACATTCATGATGTGATTTGTGGCCGGCATGGCTCCCAAGGAGCATGGAGGTTATATATGG
TTCCTGTTTTTTGCCTGTCTTCCTGGGTCATAAAGGGCTGTACATTTAGGGTTTTGTTAT
TTGTTATAGTTGTAGAATATGCTTATAAGCCCCCCTTTTCTAATGATTAAGGCCAGCGAG
GTATTTATGCTAGTTTTCTCTTGATGACATTTAAGGCATGTCTGTTAGCCTGCTTCTTAA
AACAGGGTCTGCAAGATTAAAGGGCAGCTAGGCAGCAAATGCTTTAGGTTGGTCATGCAT
TGAGCGTGTGTAGTCATGTACCCCCTCCCTCCTCCGTAGCTCTGAAGCAATCACAGGCAT
AGAAAGCAAAAGGAACAGTAAAACTCTTGGATTTGTGTAAATCCAGGCGCTCGGCATGCA
GCAGATCCTGATGTAGAGTAACCCGAGAACCATCAATAAACGCATCTATCTGTGCACACG
CCGTGTACGAGAAAAATGGATTAAGGACTAGCAGTGTCTCAGTTATCCAGGCAGTGCTGT
CTTGTTACACCTTTACTGAGTTGCTCGAGGATACCTTTAAGGCAGAACACCCGAGTTTCT
TTGAAAAGATTTTCTTGCTGATAAATCTGTAGGCAATGTAGCCAGTGTGTGGTGCAGGCT
TGATATTTGTAGGGCTCAGCAGTCTTTGGAGCACTTGTGTTTTGTGTCACTGCTGGGTCT
TGGGGTCAGCAAAGGAAATTGATGGCCTCTGTCCTCAAGGGCCACACCCAGGATACATGC
AAATAAATGAATTACAGCGTTTAAGCCCTTCAGTGAGAGATACACATGAGATGTTGCCGG
CTCCTTGGTGGCACGTCCAGGTGAGAGGAGAGAGATCCAGGTCCCGCCAGGGTCTTTCCG
GGGCTAAGCTGGATGTCGAGTGTCGATGGCCCAGAAGAAACACACCGAGCCTGGAGTCTT
GTCAAAGCAGGAACTCAACTTTATGGCATCAGCCTCTCTC..........

Sequence Detail Report

Gene Symbol (Gene ID) Lmbrd1 (ENSMUSG00000073725)
Transcript ID ENSMUST00000186096
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 162 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
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