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Target CDS Information

Gene Symbol (Gene ID) Lmbrd1 (ENSMUSG00000073725)
Cross Reference
EMBL AC116997, AC153019
GO GO:0005158, GO:0005764, GO:0005886, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Lmbrd1-003
OTTP OTTMUSP00000066759
OTTT OTTMUST00000120744
UniParc UPI000462106C
Uniprot/SPTREMBL A0A087WPS2
Vega_transcript Lmbrd1-003, OTTMUST00000120744
Vega_translation 178855, OTTMUSP00000066759
Definition protein_id:ENSMUSP00000139893
translation:
MAAAAAELVIGWCIFGLLLLAILAFCWVYVRKYQSQRESEVVSTVTAIFSLAVALITSAL
LPVDIFLVSYMKNQNGTFKDIEEVEQHIQTIRSKSKDGRPLPARDRRALKQCEERLRTLR
KRERHLEFIENSWWTKFCGALRP

Chromosome 1
Length
Position(start - end)
53,136
24,678,757 - 24,731,894
Orient to Chromosome plus
Link Location : (1:24678757-24731894)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lmbrd1 (ENSMUSG00000073725)
Transcript ID ENSMUST00000186190
Reports
substitution
cSNPs0
Insertion29
Deletion56
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000186190)
MAAAAAELVIGWCIFGLLLLAILAFCWVYVRKYQSQRESEVVSTVTAIFSLAVALITSAL
LPVDIFLVSYMKNQNGTFKDIEEVEQHIQTIRSKSKDGRPLPARDRRALKQCEERLRTLR
KRERHLEFIENSWWTKFCGALRP
MSMv4 transcript
MAAAAAELVIGWCIFGLLLLAILAFCWVYVRKYQSQRESEVVSTVTAIFSLAVALITSAL
LPVDIFLVSYMKNQNGTFKDIEEVEQHIQTIRSKSKDGRPLPARDRRALKQCEERLRTLR
KRERHLEFIENSWWTKFCGALRP
homology100.00 (143 / 143)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lmbrd1 (ENSMUSG00000073725)
Transcript ID ENSMUST00000186190
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TGTTGTGGTGATGTTATAGACAGCAGGAACTAGAGGTGGCTACTCACATC
CAAGGTCAAGCGCAGACAGCAATGAGTTGTGCATGCATGCTAGGTAAGTCTTCAGTTCTG
GTCCAGGGATGTGGAAATGTTACCACCCACATTCAGGGTGGGGCTTCTCACCTCAGCCCA
ATTAAAGGAAAAAATCCCTCACAAGCCCACAGGACAATGTATTCGAGACAATTTGTCACT
GAGTCTTCCGAGATGGTTCTGCATTGTATCAAGCCCACAGACAAACGTCCACAATCAAAA
CTAAACATCACGCCGGGGTTTGTTTATTCAATTTAAATATACACTAATACACCACGGGAC
CCAGGCAAGCATCCCAGGTTTTCCCTCAGCTTCACATAAGATTTACAACAATCTCTGTTT
TGTTCACTTGAGCATATTATTAGCACCTACAATTCATAGACTCGGACATTTTAATTGTAT
GAAACCATCATGGAAATTCACAGGTACGCGCAGATGGAAAAAACAAAACAAAACAAAACA
TCACGTGGTAGCACAGTGCCGTCAAGCAATGACGTGACCTGGTCATCAGCAAATTATAAA
GTCATCTGGGCAGATGACATTCTTTTATTCTGAGTCATTCCTGCACCAGGATGACTTCTG
ATTGCATAATGGGATCAAAACCTTGTTTTTGGAAGCAATGAAAACCCGTAATGTCACTCT
ACATTCTGAGGCACAGACATAGCCCTACCTCGGTAAAGCTCCTAGAGTGCCAGCAAGATC
AAGTGGCACGCAGCCCGCGCGTGGGCGGGCAGCGTGGTGACGTCACGGTGCGTCGGGTGC
GCCCCGCCTCGGCTCGGCTGGTCGCCAGGGGACGCTCGCGGGCCGGGTCTCCTTGGCAAC
CCTCCGCTCTGCCCCTCCGCCCCTTTAACCTTTAGGCTGCGCAGTTCCGGGTCCCTCTTC
GTTCCGTCCCGTCCCGTCCCGTGCCTTCCCTCCCCACCCCTTTGGGCTTA
1 EXON 1 24,678,739 24,678,816 - 0 78
TCCGGACCGGAAGCGAAGATGGCGGCGGCGGCGGCCGAGCTGGTGATCGGCTGGTGCATC
TTCGGCCTCTTGCTCCTG
INTRON 1 - 2 24,678,817 24,685,396 6,580
GTAGGGGAGGCGCTCCGAGTTCTCC..........GGTATTTCTTTTTGCTGTGTTTCAG
2 EXON 2 24,685,397 24,685,573 0 0 177
GCTATTTTGGCCTTTTGCTGGGTCTACGTTCGGAAGTACCAGAGTCAGCGGGAAAGTGAG
GTCGTCTCCACTGTGACAGCCATTTTTTCACTGGCTGTTGCTCTGATCACATCAGCACTG
CTGCCGGTGGATATATTTTTGGTTTCTTACATGAAAAATCAAAATGGCACATTCAAG
INTRON 2 - 3 24,685,574 24,728,626 43,053
GTAATTAGTATTGTGCTATGCGATT..........CTACGAGCGCCTGGAGAACACGGAG
3 EXON 3 24,728,627 24,728,671 0 0 45
GACATCGAGGAAGTGGAGCAGCACATTCAGACGATTCGATCCAAG
INTRON 3 - 4 24,728,672 24,731,746 3,075
GTAAGCTCTGCCTCATCGCTGGAAG..........CTTGATTTTGTTCTATTATTTGTAG
4 EXON 4 24,731,747 24,731,894 0 - 148
AGCAAAGATGGTCGACCTTTGCCAGCGAGGGATAGACGTGCCTTAAAGCAATGTGAAGAA
AGACTAAGAACGCTTAGGAAAAGAGAGCGGCACTTGGAATTCATTGAAAACAGCTGGTGG
ACGAAATTTTGTGGTGCCCTGCGCCCCC
3' upstream sequence
TGAAGGTAAATGGAGTTTTATAAAGTAGTTCATTCAGATCTCTTGCAAGGCCTTCTGTAG
CACCTCTCAGAGAGGTGAATCTCCCTGCGCGGCAGTGCCATGACACTCTCGAGCCTGGGC
TTTGGAGCTGAAGTAACCCAGGCTGCATCACAGCTCTCTGGCTGGTAGTCTGAACAAGGC
CTGTAACATCAGAGACCCACGGGCTCCTGTGCAGTGAGTCATTACGAAATGCAAAGGGGA
GGAAGGGAAAGTGACAGAAGAAGCCAGAACATATTCTGCAGGTCTGTGCTCTGGTTGTAC
GTGGGAGACTGGAGACGCACATCAGGACTCAGGAACCTGCCTCCAAGTGGCAGCTTAGCT
TGTTAGATGAGCGTCTAGAAGACCATAATGCTATGTGTGTGAACTGGAAACCATTACTTC
TCTATTTAAGAGTCTGTTGTTTGCCAGCCTTCTAGTCTTGCCACTATGGCACTTGAATTT
TGGTACCAGAATTTAAGTACCTAGGGCAGTGATGGCAGCTCAGACTATAAAGTATCTGAC
AGTGTTAGCTATGGAACCAGCTTTACCTGTTCTGCGTTTGGGAAACTTTCGGGTGGCAGA
TGGCAGGATGTGGTAATACTCAAGTTGTAATTTATGCTGCACATTGCATACATTGACTGG
AAGTGAAGTTAGTCAGGAAGGTAGAAAACAGGTTGGCCTAAACCTTAAGATAAATGTTAT
AGATTGGTGTCCGGTGACATATGCCTCCAGTCTCAGTATTTGGTAGGTTGGAACTGTAGG
CTTCTGAGTTCAAGGCCAGCCTAAGCCGCATGGTGACACTGTCTCAAAAACACAACCTAG
AATAACGTTTTAGAGAATGCCATAAAAGATGGAACAGACAGGCTGACTACCTTAACATCC
TTTGACATTTAAAAACTGAGACTATATTGTCCATTAAGTCATTTAATCTTTCTAGGTGGT
CAGCTTTATAAGCGTCTCTTAGAATGCATCTCTGCATACT..........

Sequence Detail Report

Gene Symbol (Gene ID) Lmbrd1 (ENSMUSG00000073725)
Transcript ID ENSMUST00000186190
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 143 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information