MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Cops5 (ENSMUSG00000025917)

Cross Reference

EMBL	AC102570
GO	GO:0000338, GO:0003713, GO:0004843, ...show all
goslim_goa	GO:0000988, GO:0003674, GO:0005575, ...show all
MGI_trans_name	Cops5-006
OTTP	OTTMUSP00000066329
OTTT	OTTMUST00000118982
UniParc	UPI00000EA150
Uniprot/SPTREMBL	A0A087WRH6
Vega_transcript	Cops5-006, OTTMUST00000118982
Vega_translation	178691, OTTMUSP00000066329

Definition

protein_id:ENSMUSP00000140633
translation:

MAASGSGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEILAAKPWTKE

Chromosome

Length
Position(start - end)

145
10,037,666 - 10,037,812

Orient to Chromosome

minus

Link

Location : (1:10037666-10037812)
/

Detail Map

name	Cops5 (ENSMUSG00000025917)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cops5 note : COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) [Source:MGI Symbol;Acc:MGI:1349415]

name	Cspp1 (ENSMUSG00000056763)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cspp1 note : centrosome and spindle pole associated protein 1 [Source:MGI Symbol;Acc:MGI:2681832]

name	Cops5 (ENSMUSG00000025917)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000027050

name	Cops5 (ENSMUSG00000025917)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000190155

name	Cops5 (ENSMUSG00000025917)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000186528

name	Cops5 (ENSMUSG00000025917)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000188619

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000191012

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000071087

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000117415

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000118263

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000122156

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000119714

name	Cops5 (ENSMUSG00000025917) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14818.1 Uniprot/SWISSPROT:O35864 RefSeq_peptide:NP_001264030.1 RefSeq_peptide:NP_038743 RefSeq_mRNA:NM_001277101.1 RefSeq_mRNA:NM_013715.2 Vega_transcript:Cops5-001 Vega_transcript:OTTMUST00000072996 UCSC:uc007ahe.2 Fantom:2700067H17 Fantom:I730044N10 Fantom:I830030O16 EMBL:AF065386 EMBL:AF068223 EMBL:AK012499 EMBL:AK146271 EMBL:AK151492 EMBL:BC046753 EMBL:U70736 GO:GO:0000338 GO:GO:0000338 GO:GO:0003713 GO:GO:0004843 GO:GO:0004843 GO:GO:0005515 GO:GO:0005634 GO:GO:0005634 GO:GO:0005654 GO:GO:0005654 GO:GO:0005667 GO:GO:0005737 GO:GO:0005737 GO:GO:0006355 GO:GO:0008021 GO:GO:0008021 GO:GO:0008180 GO:GO:0008180 GO:GO:0008237 GO:GO:0008237 GO:GO:0010388 GO:GO:0010388 GO:GO:0016579 GO:GO:0016579 GO:GO:0030054 GO:GO:0045944 GO:GO:0045944 GO:GO:0046328 GO:GO:0046328 GO:GO:0046872 GO:GO:0048471 GO:GO:0051726 GO:GO:1903894 GO:GO:1903894 GO:GO:1990182 GO:GO:1990182 MEROPS:M67.002 MGI_trans_name:Cops5-001 Vega_translation:178689 Vega_translation:OTTMUSP00000037726 goslim_goa:GO:0000988 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0008233 goslim_goa:GO:0016023 goslim_goa:GO:0016192 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAC17179.1 protein_id:AAD03470.1 protein_id:AAF61318.1 protein_id:AAH46753.1 protein_id:BAB28282.1 protein_id:BAE27030.1 protein_id:BAE30445.1 OTTP:OTTMUSP00000037726 OTTT:OTTMUST00000072996 UniParc:UPI000000BAB7
definition	note : transcript_id=ENSMUST00000027050 protein_id : ENSMUSP00000027050 translation : MAASGSGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHCKQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSEKLEQSEAQLGRGSFMLGLETHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQINVA

name	Cops5 (ENSMUSG00000025917) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cops5-007 Vega_transcript:OTTMUST00000118981 Uniprot/SPTREMBL:A0A087WQ60 UCSC:uc033fib.1 GO:GO:0000338 GO:GO:0003713 GO:GO:0004843 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005667 GO:GO:0005737 GO:GO:0006355 GO:GO:0008021 GO:GO:0008180 GO:GO:0008237 GO:GO:0010388 GO:GO:0016579 GO:GO:0045944 GO:GO:0046328 GO:GO:0051726 GO:GO:1903894 GO:GO:1990182 MGI_trans_name:Cops5-007 Vega_translation:178690 Vega_translation:OTTMUSP00000066328 goslim_goa:GO:0000988 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0008233 goslim_goa:GO:0016023 goslim_goa:GO:0016192 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000066328 OTTT:OTTMUST00000118981 UniParc:UPI00046211E3
definition	codon_start : 3 note : transcript_id=ENSMUST00000190155 protein_id : ENSMUSP00000140054 translation : XALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKILCLRSLIFQIIFGS

name	Cops5 (ENSMUSG00000025917) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cops5-006 Vega_transcript:OTTMUST00000118982 Uniprot/SPTREMBL:A0A087WRH6 EMBL:AC102570 GO:GO:0000338 GO:GO:0003713 GO:GO:0004843 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005667 GO:GO:0005737 GO:GO:0006355 GO:GO:0008021 GO:GO:0008180 GO:GO:0008237 GO:GO:0010388 GO:GO:0016579 GO:GO:0045944 GO:GO:0046328 GO:GO:0051726 GO:GO:1903894 GO:GO:1990182 MGI_trans_name:Cops5-006 Vega_translation:178691 Vega_translation:OTTMUSP00000066329 goslim_goa:GO:0000988 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0008233 goslim_goa:GO:0016023 goslim_goa:GO:0016192 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000066329 OTTT:OTTMUST00000118982 UniParc:UPI00000EA150
definition	note : transcript_id=ENSMUST00000186528 protein_id : ENSMUSP00000140633 translation : MAASGSGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEILAAKPWTKE

name	Cops5 (ENSMUSG00000025917) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cops5-005 Vega_transcript:OTTMUST00000118983 Uniprot/SPTREMBL:A0A087WQA8 UCSC:uc033fia.1 EMBL:AC102570 GO:GO:0000338 GO:GO:0003713 GO:GO:0004843 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005667 GO:GO:0005737 GO:GO:0006355 GO:GO:0008021 GO:GO:0008180 GO:GO:0008237 GO:GO:0010388 GO:GO:0016579 GO:GO:0045944 GO:GO:0046328 GO:GO:0051726 GO:GO:1903894 GO:GO:1990182 MGI_trans_name:Cops5-005 Vega_translation:178692 Vega_translation:OTTMUSP00000066330 goslim_goa:GO:0000988 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0008233 goslim_goa:GO:0016023 goslim_goa:GO:0016192 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000066330 OTTT:OTTMUST00000118983 UniParc:UPI00046210DE
definition	note : transcript_id=ENSMUST00000188619 protein_id : ENSMUSP00000140115 translation : MSLRRRRAPAREWSGPTSPPVSSVMAALRVYHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHCKQYYALEVS

name
type	misc_feature
link
xref
definition	note : contig AC102570.8 1..194371(-1)

name	Cops5 (ENSMUSG00000025917)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000072998 Vega_transcript:OTTMUST00000072998 MGI_trans_name:Cops5-003 OTTT:OTTMUST00000072998
definition	note : retained_intron note : transcript_id=ENSMUST00000139578

name	Cops5 (ENSMUSG00000025917)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000072997 Vega_transcript:OTTMUST00000072997 MGI_trans_name:Cops5-002 OTTT:OTTMUST00000072997
definition	note : retained_intron note : transcript_id=ENSMUST00000150509

name	Cops5 (ENSMUSG00000025917)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118984 Vega_transcript:OTTMUST00000118984 MGI_trans_name:Cops5-004 OTTT:OTTMUST00000118984
definition	note : retained_intron note : transcript_id=ENSMUST00000191296

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118985 Vega_transcript:OTTMUST00000118985 UCSC:uc056ycf.1 MGI_trans_name:Cspp1-016 OTTT:OTTMUST00000118985
definition	note : retained_intron note : transcript_id=ENSMUST00000190610

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000067776 Vega_transcript:OTTMUST00000067776 MGI_trans_name:Cspp1-002 OTTT:OTTMUST00000067776
definition	note : retained_intron note : transcript_id=ENSMUST00000143606

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118987 Vega_transcript:OTTMUST00000118987 MGI_trans_name:Cspp1-020 OTTT:OTTMUST00000118987
definition	note : retained_intron note : transcript_id=ENSMUST00000191360

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118988 Vega_transcript:OTTMUST00000118988 MGI_trans_name:Cspp1-021 OTTT:OTTMUST00000118988
definition	note : retained_intron note : transcript_id=ENSMUST00000191521

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118989 Vega_transcript:OTTMUST00000118989 MGI_trans_name:Cspp1-022 OTTT:OTTMUST00000118989
definition	note : retained_intron note : transcript_id=ENSMUST00000190063

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000067950 Vega_transcript:OTTMUST00000067950 MGI_trans_name:Cspp1-009 OTTT:OTTMUST00000067950
definition	note : retained_intron note : transcript_id=ENSMUST00000134716

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cops5 (ENSMUSG00000025917)
Transcript ID	ENSMUST00000186528

Reports
substitution
cSNPs	0
Insertion	19
Deletion	29
SNPs	+1kb 10038028(c.-216C>G), 10038034(c.-222G>A), 10038102(c.-290C>G), 10038325(c.-513T>C), 10038490(c.-678A>G), 10038516(c.-704T>C), 10038517(c.-705C>T), 10038557(c.-745C>G), 10038783(c.-971C>A), 10038797(c.-985A>T), 10038886(c.-1074C>A), 10038935(c.-1123T>G), 10038986(c.-1174C>T), 10038994(c.-1182A>G), 10039009(c.-1197G>T), 10039152(c.-1340G>A), 10039181(c.-1369C>T), 10039359(c.-1547A>G), 10039456(c.-1644G>T), 10039555(c.-1743A>G), 10039587(c.-1775C>A), 10039626(c.-1814A>G), 10039712(c.-1900G>T), 10039825(c.-2013T>C), 10039840(c.-2028C>G), 10040262(c.-2450C>T), 10040330(c.-2518A>G), 10040357(c.-2545G>A), 10040400(c.-2588C>A), 10040527(c.-2715C>T), 10040529(c.-2717C>G), 10040575(c.-2763G>C), 10040625(c.-2813T>C), 10040716(c.-2904T>C), 10040891(c.-3079G>A), 10041050(c.-3238C>A), 10041220(c.-3408T>C), 10041313(c.-3501G>A), 10041491(c.-3679C>A), 10041532(c.-3720A>T), 10042128(c.-4316G>A), 10042129(c.-4317G>A), 10042330(c.-4518A>G), 10042372(c.-4560T>C), 10042379(c.-4567A>T), 10042387(c.-4575G>A), 10042778(c.-4966T>A), 10042798(c.-4986G>A), 5'UTR CDS 3'UTR INTRON 10027411(c.633-160A>G), 10027427(c.633-176T>G), 10027428(c.633-177G>A), 10027497(c.633-246G>A), 10027504(c.633-253G>A), 10027525(c.633-274G>A), 10027772(c.633-521T>A), 10027796(c.633-545C>T), 10027837(c.633-586A>G), 10027838(c.633-587C>G), 10027853(c.633-602T>G), 10027861(c.633-610A>G), 10027963(c.633-712C>T), 10027986(c.633-735A>G), 10028116(c.633-865T>G), 10028135(c.633-884A>G), 10028180(c.633-929C>T), 10028290(c.633-1039A>G), 10028410(c.633-1159A>T), 10028495(c.633-1244C>T), 10028636(c.633-1385A>G), 10028959(c.632+1640T>A), 10028993(c.632+1606G>A), 10029062(c.632+1537C>T), 10029078(c.632+1521G>T), 10029091(c.632+1508C>T), 10029095(c.632+1504G>A), 10029501(c.632+1098A>G), 10029562(c.632+1037T>G), 10029600(c.632+999C>T), 10029681(c.632+918A>C), 10030085(c.632+514C>A), 10030249(c.632+350A>G), 10030251(c.632+348A>G), 10031039(c.521-329C>T), 10031040(c.521-330A>G), 10031204(c.521-494A>C), 10031207(c.521-497T>C), 10031260(c.521-550C>A), 10031565(c.520+774T>C), 10031649(c.520+690A>G), 10031881(c.520+458C>T), 10031889(c.520+450C>T), 10031912(c.520+427T>C), 10032026(c.520+313G>T), 10032059(c.520+280G>A), 10032573(c.435-149A>T), 10032806(c.435-382G>A), 10033035(c.434+223G>A), 10033340(c.369-17T>C), 10033421(c.369-98T>C), 10033430(c.369-107C>G), 10033444(c.369-121T>G), 10033622(c.369-299G>A), 10033687(c.368+321T>C), 10033762(c.368+246T>C), 10034157(c.240-21G>A), 10034241(c.240-105G>T), 10034337(c.240-201G>A), 10034668(c.239+261G>T), 10034822(c.239+107T>A), 10034878(c.239+51C>T), 10034906(c.239+23C>T), 10035240(c.5-77C>T), 10035413(c.5-250C>T), 10035424(c.5-261C>G), 10035466(c.5-303A>G), 10035595(c.5-432T>C), 10035684(c.5-521T>A), 10035731(c.5-568G>A), 10035733(c.5-570G>A), 10035840(c.5-677G>A), 10036015(c.5-852G>T), 10036040(c.5-877G>A), 10036053(c.5-890G>A), 10036157(c.5-994A>G), 10036294(c.5-1131A>G), 10036328(c.5-1165G>A), 10036374(c.5-1211A>G), 10036420(c.4+1242A>G), 10036430(c.4+1232C>G), 10036446(c.4+1216C>T), 10036621(c.4+1041G>A), 10036688(c.4+974G>A), 10036808(c.4+854G>A), 10036900(c.4+762T>C), 10036985(c.4+677G>A), 10037121(c.4+541A>T), 10037160(c.4+502A>G), 10037194(c.4+468G>C), 10037213(c.4+449C>G), 10037246(c.4+416T>C), 10037289(c.4+373A>G), 10037305(c.4+357T>G), 10037307(c.4+355T>C), 10037582(c.4+80T>A), -1kb 10022207(c.15459C>G), 10022241(c.15425T>A), 10022265(c.15401C>T), 10022282(c.15384C>T), 10022392(c.15274G>A), 10022397(c.15269C>T), 10022424(c.15242T>C), 10022460(c.15206G>A), 10022461(c.15205A>C), 10022562(c.15104G>A), 10022585(c.15081C>G), 10022586(c.15080A>T), 10022753(c.14913G>A), 10022783(c.14883G>C), 10022962(c.14704G>T), 10023015(c.14651C>T), 10023055(c.14611G>A), 10023060(c.14606T>A), 10023197(c.14469G>A), 10023409(c.14257T>G), 10023522(c.14144C>T), 10023552(c.14114C>T), 10023652(c.14014C>T), 10023660(c.14006T>C), 10023685(c.13981G>C), 10023726(c.13940A>G), 10023815(c.13851C>T), 10023835(c.13831T>G), 10023875(c.13791G>A), 10023919(c.13747A>G), 10024011(c.13655C>T), 10024080(c.13586G>A), 10024118(c.13548A>G), 10024131(c.13535G>T), 10024138(c.13528T>A), 10024162(c.13504C>G), 10024239(c.13427T>G), 10024241(c.13425T>C), 10024259(c.13407A>G), 10024275(c.13391A>G), 10024295(c.13371A>C), 10024317(c.13349G>A), 10024402(c.13264C>T), 10024452(c.13214G>A), 10024490(c.13176G>A), 10024491(c.13175T>C), 10024510(c.13156A>G), 10024535(c.13131C>T), 10024551(c.13115C>G), 10024717(c.12949G>A), 10024763(c.12903C>T), 10024807(c.12859T>G), 10024988(c.12678C>T), 10025133(c.12533G>A), 10025209(c.12457T>A), 10025331(c.12335A>G), 10025409(c.12257A>T), 10025418(c.12248T>C), 10025491(c.12175C>G), 10025495(c.12171C>A), 10025519(c.12147A>G), 10025717(c.11949A>C), 10025776(c.11890C>T), 10026103(c.11563C>A), 10026124(c.11542T>C), 10026473(c.11193C>T), 10026516(c.11150T>A), 10026567(c.11099A>G), 10026570(c.11096A>G), 10026628(c.11038T>C), 10026634(c.11032A>G), 10026737(c.10929C>A), 10026763(c.10903G>T), 10026847(c.10819A>G),
Insertions	+1kb 10038448 (c.-637dupA), 10038774 (c.-963_-962insA), 10039101 (c.-1292_-1290dupAAG), 10039721 (c.-1910_-1909insC), 10039725 (c.-1914dupC), 10040401 (c.-2590_-2589insT), 10042916 (c.-5105_-5104insG), 5'UTR CDS 3'UTR INTRON 10028427 (c.633-1177dupA), 10028828 (c.633-1578_633-1577insCCTACTTA), 10029781 (c.632+817_632+818insGA), 10030158 (c.632+440dupT), 10032075 (c.520+263_520+264insAG), 10032268 (c.520+70dupC), 10035813 (c.5-651_5-650insGCCTGCCTC), 10037130 (c.4+531_4+532insT), -1kb 10022312 (c.15353_15354insT), 10023207 (c.14458_14459insTAA), 10023696 (c.13969_13970insGAA), 10025209 (c.12456_*12457insAAAA),
Deletions	+1kb 10038805 (c.-996_-994delTGA), 10038810 (c.-1001_-999delGAT), 10039471 (c.-1667_-1660delTGTTTCGA), 10039649 (c.-1845_-1838delCGCTGCTG), 10041352 (c.-3541delG), 10041462 (c.-3656_-3651delAACAAA), 10041940 (c.-4129delG), 10042460 (c.-4652_-4649delTATC), 5'UTR CDS 3'UTR INTRON 10027465 (c.633-222_633-215delGTGTGTGT), 10031747 (c.520+587_520+591delTGTTT), 10032473 (c.435-50delA), 10033810 (c.368+192_368+197delAAAAAA), 10034579 (c.239+347_239+349delCAA), 10034711 (c.239+216_239+217delAA), 10035785 (c.5-626_5-623delCTCT), 10035910 (c.5-749_5-748delTT), 10036577 (c.4+1083_4+1084delTT), 10037233 (c.4+425_4+428delTTGG), 10037334 (c.4+327delT), 10037354 (c.4+304_4+307delAGTT), -1kb 10022525 (c.15137_15140delTCTG), 10023077 (c.14587_14588delGT), 10023615 (c.14047_14050delGGTT), 10024087 (c.13577_13578delAG), 10024307 (c.13357_13358delGT), 10025556 (c.12108_12109delGT), 10026700 (c.10964_10965delCT), 10026789 (c.10875_10876delGA), 10026794 (c.*10871delG),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000186528)	MAASGSGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEILAAKPWTKE*
MSMv4 transcript	MAASGSGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEILAAKPWTKE*
homology	100.00 (49 / 49)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cops5 (ENSMUSG00000025917)
Transcript ID	ENSMUST00000186528


..........AATCTGGGTGCTCTAAAGCAGAAATGTCAAGAAGTGCATTTCAAGCAATG
CCTAAAAACTAATATATTACTAAGCCAAGGAAAAAAGTTCTAATAGAATGAAAAACTGGG
TTGGGGGAGCTAAAAGAAGATGATGAAGCTGGAGAAGTCTTTAAGAACCGTGTTACGAAA
AAAATTAAATATATTAGAATTAAATAAAACACAAATTTCATGCATGCCTTCAACTTACAG
TCTAGTGGGCAATTGGGGATGAGAATGTGAGGGAAGAAAACCTAAAAATACGACTGAAAC
AAATTTCACATTAACTGCTGGAAGGCACAGGTTGCGGAGATTAAATCTGCACTGAGACAA
ACCTTTTTTAAAAAGTAGCGCCTAAGGCATTCACGGCTCCTAACACTTGTATAAAATGTT
ACCCTATAAAGTCCTCAAAAAAGTTAATCTTAGCAACCGGTGACTTTTGCTTGCCACCTC
GCAACAGTAGCGAAAACACAAAAGCGGAACGCCAACCACAAACCCCGGAGGCTTAACACA
CCGCAAATTATCTTAAAAGAGTCACGCGATCTTCCCCCTCCAAAACCAATAATCCGGAGA
TACTTACACCTCTGTTTCTCTAGAGACATTTAGTATTCCAAACAATTTATTTCGTTTGAA
GCACCTACACTCACATAAACATAATTCCCCAAACTCAAGTTTCCTCCTACACACAATATG
GTGGCATCTGAGTCTGCGCAGTACGAGCCGAGCCGGCCGACTCCTTCCTGGCAGGCCAAT
AGTCCCGCCTTCCGGCGCGAAAGGCTGTACCATTCCCACACCGAGGCTTTGCGTCCCTCG
CAGTTCACAGGAACGGATTTCCGAGCCAGCATGTTCTCGTTTCACCGGCAAGACTGATCT
TAGCCGAGCCGAGCCGAACCAACGCTAAGGAAGTGTTTTCTATGTCGCTGCGCCGCCGCC
GCGCCCCAGCGCGCGAATGGTCTGGACCAACGTCACCTCCGGTCTCAAGT
GTCATGGCTGCCTTGAGAGTCTAGTGAGTGTGCACCCTGGTGGGGAAGGTCCAAAGCCCGCACGCTGAGGCCCAGTAGAAGAAAGTTGCATCTTGATTGTGGAGCGACAGCTTCTCCGGTGCCTCGGCCATGGCAGCTTCCGGGAGTGGTATGGCCCAGAAAACCTGGGAATTGGCCAACAACATGCAGGAAGCGCAGAGTATCGATGAAATCTACAAATATGACAAAAAACAACAACAAGAAATCCTGGCGGCGAAACCCTGGACTAAGGAGTGAGGAG
GTCCCTGGCGAGACGCAGGGGAGGG..........ATCACAGTGTAATTTTGTTTTATAG
TCACCACTACTTTAAATACTGCAAAATCTCAGCATTGGCTCTACTGAAAATGGTGATGCATGCCAGGTCAGGAGGCAACTTGGAAGTGATGGGTTTGATGCTCGGGAAAGTCGACGGCGAGACCATGATCATCATGGACAGTTTCGCTTTGCCTGTAGAGGGCACAGAAACTCGAGTAAATGCTCAAGCTGCTGCGTATGAGTATATGGCTGCATACATAGAAAATGCCAAACAG
GTAAAAATATTGTTTCTTAAATTTA..........AAGCATTTTTTCTTTGATGTGTTAG
GTTGGCCGCCTTGAGAATGCAATCGGTTGGTATCATAGCCACCCTGGTTATGGCTGCTGGCTCTCCGGGATTGATGTTAGTACACAGATGCTGAACCAGCAGTTTCAAGAACCATTTGTAGCAGTGGTG
GTAAGTACTAACTGGAGGTTTAGTA..........TATGTTGGCCATCTGTCTCTTGTAG
ATTGATCCAACCAGAACAATCTCTGCAGGAAAAGTGAATCTTGGCGCCTTTAGGACATATCCAAAG
GTAATTTGGATGGAGGGAGGGGCTA..........TTCCGTTTCCTTTGTTTTGGTTTAG
GGCTACAAACCTCCTGATGAAGGACCTTCTGAGTACCAGACTATCCCACTTAATAAAATAGAAGATTTTGGCGTGCACTGCAAACA
GTGAGTAGTTGAACAGTCGTCAGGT..........CCAAATGTGTGCTCTTGTTTTATAG
ATATTATGCCTTAGAAGTCTCATATTTCAAATCATCTTTGGATCGTAAACTACTTGAGCTTTTGTGGAATAAATACTGGGTGAATACCCTGAGTTCCTCTAGCTTGCTTACT
GTAAGTACTGGACTTGTTTCATTTG..........TGACACAGTCCCACTTTCTCCACAG
AATGCAGACTACACCACAGGCCAGGTGTTTGATTTGTCTGAGAAGTTAGAGCAG
TCGGAAGCCCAACTGGGACGTGGCAGTTTCATGTTGGGCTTAGAAACACATGACCGCAAG
TCGGAAGACAAACTTGCCAAAGCTACTAGAGACAGGTAAGGACGTGTGCAGGGCTCCTGC
CCTGACTCTCTCAGAATTTACCAATAGTAGATTCTGATTGCTTATGGTTACCTTAGTGCA
CCTTAGGATGACGTCTGATGATTATTTGCTTAGCCCTTTTTAAAAGTCACGTGTAAATTT
TAAATTCACACTTTGAAATTTTAGGGGATGTTAGGCAAAAGAGAAAGTTCAGCTCACAGA
GCTAGAAAGATCATAGATGATGCCACTTCACCCTGTCTAGGTTTAGCCACGGGTACGAGG
AGAGTTGGTCCCTGACTATACCTTTTAGGCGGGAATGGGGCTGGGGGAGGCTTAAGAGGC
TGAAGGATTAAGATTAAATTAAGATTTCTTTAGTTTGCCAAATTTCAGATTCCAAAGTAT
CATGGAACAGATTTCCTCTGTTAACACCTTGGGCTACAGTTATTCTTTCTGCAATTATCT
TACTATCCCATGTTTTACTTCCTGAGTATCTCCTTGCAGTGTAGTCTCTGACAACTTAGA
TGTAGCCTTCTGATGCATATACCAAACGGGGTTTAAAAACTAAGATTTACTGCTACAGAA
ACTTGAGTTTCAATATGCTGTAGGCAGGAGGAAGATAGACCGTTTGGGCAGGCGAAAGCT
GGCCTGTTCATTCCTCTCTACTTCAGCATCATTCTGTAAGGCTCTAGGGCTCACTCTTTG
GCCCACTGGCCCATTTCCACTCCTGGGGGTGATGTTTTCCTTATTTTCATAAGCCCGTCT
GTTTCTATTCCTTGCCAAACTTGAAACGCATGACTTTCCTCCATCTCTTGGCGCCTGGCA
GGATTTCCACCTATATTATGTTTTTCTCTTAAACTCCAATAAAATTGTCTTTGAGCATTT
TTTAAAGGGGCGGGGAGATTGTTCCATAGGAAGAAAGGTG..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AATCTGGGTGCTCTAAAGCAGAAATGTCAAGAAGTGCATTTCAAGCAATG CCTAAAAACTAATATATTACTAAGCCAAGGAAAAAAGTTCTAATAGAATGAAAAACTGGG TTGGGGGAGCTAAAAGAAGATGATGAAGCTGGAGAAGTCTTTAAGAACCGTGTTACGAAA AAAATTAAATATATTAGAATTAAATAAAACACAAATTTCATGCATGCCTTCAACTTACAG TCTAGTGGGCAATTGGGGATGAGAATGTGAGGGAAGAAAACCTAAAAATACGACTGAAAC AAATTTCACATTAACTGCTGGAAGGCACAGGTTGCGGAGATTAAATCTGCACTGAGACAA ACCTTTTTTAAAAAGTAGCGCCTAAGGCATTCACGGCTCCTAACACTTGTATAAAATGTT ACCCTATAAAGTCCTCAAAAAAGTTAATCTTAGCAACCGGTGACTTTTGCTTGCCACCTC GCAACAGTAGCGAAAACACAAAAGCGGAACGCCAACCACAAACCCCGGAGGCTTAACACA CCGCAAATTATCTTAAAAGAGTCACGCGATCTTCCCCCTCCAAAACCAATAATCCGGAGA TACTTACACCTCTGTTTCTCTAGAGACATTTAGTATTCCAAACAATTTATTTCGTTTGAA GCACCTACACTCACATAAACATAATTCCCCAAACTCAAGTTTCCTCCTACACACAATATG GTGGCATCTGAGTCTGCGCAGTACGAGCCGAGCCGGCCGACTCCTTCCTGGCAGGCCAAT AGTCCCGCCTTCCGGCGCGAAAGGCTGTACCATTCCCACACCGAGGCTTTGCGTCCCTCG CAGTTCACAGGAACGGATTTCCGAGCCAGCATGTTCTCGTTTCACCGGCAAGACTGATCT TAGCCGAGCCGAGCCGAACCAACGCTAAGGAAGTGTTTTCTATGTCGCTGCGCCGCCGCC GCGCCCCAGCGCGCGAATGGTCTGGACCAACGTCACCTCCGGTCTCAAGT
1	EXON 1	10,037,662	10,037,941	-	-	280	GTCATGGCTGCCTTGAGAGTCTAGTGAGTGTGCACCCTGGTGGGGAAGGTCCAAAGCCCG CACGCTGAGGCCCAGTAGAAGAAAGTTGCATCTTGATTGTGGAGCGACAGCTTCTCCGGT GCCTCGGCCATGGCAGCTTCCGGGAGTGGTATGGCCCAGAAAACCTGGGAATTGGCCAAC AACATGCAGGAAGCGCAGAGTATCGATGAAATCTACAAATATGACAAAAAACAACAACAA GAAATCCTGGCGGCGAAACCCTGGACTAAGGAGTGAGGAG
	INTRON 1 - 2	10,035,164	10,037,661			2,498	GTCCCTGGCGAGACGCAGGGGAGGG..........ATCACAGTGTAATTTTGTTTTATAG
2	EXON 2	10,034,929	10,035,163	-	-	235	TCACCACTACTTTAAATACTGCAAAATCTCAGCATTGGCTCTACTGAAAATGGTGATGCA TGCCAGGTCAGGAGGCAACTTGGAAGTGATGGGTTTGATGCTCGGGAAAGTCGACGGCGA GACCATGATCATCATGGACAGTTTCGCTTTGCCTGTAGAGGGCACAGAAACTCGAGTAAA TGCTCAAGCTGCTGCGTATGAGTATATGGCTGCATACATAGAAAATGCCAAACAG
	INTRON 2 - 3	10,034,137	10,034,928			792	GTAAAAATATTGTTTCTTAAATTTA..........AAGCATTTTTTCTTTGATGTGTTAG
3	EXON 3	10,034,008	10,034,136	-	-	129	GTTGGCCGCCTTGAGAATGCAATCGGTTGGTATCATAGCCACCCTGGTTATGGCTGCTGG CTCTCCGGGATTGATGTTAGTACACAGATGCTGAACCAGCAGTTTCAAGAACCATTTGTA GCAGTGGTG
	INTRON 3 - 4	10,033,324	10,034,007			684	GTAAGTACTAACTGGAGGTTTAGTA..........TATGTTGGCCATCTGTCTCTTGTAG
4	EXON 4	10,033,258	10,033,323	-	-	66	ATTGATCCAACCAGAACAATCTCTGCAGGAAAAGTGAATCTTGGCGCCTTTAGGACATAT CCAAAG
	INTRON 4 - 5	10,032,425	10,033,257			833	GTAATTTGGATGGAGGGAGGGGCTA..........TTCCGTTTCCTTTGTTTTGGTTTAG
5	EXON 5	10,032,339	10,032,424	-	-	86	GGCTACAAACCTCCTGATGAAGGACCTTCTGAGTACCAGACTATCCCACTTAATAAAATA GAAGATTTTGGCGTGCACTGCAAACA
	INTRON 5 - 6	10,030,711	10,032,338			1,628	GTGAGTAGTTGAACAGTCGTCAGGT..........CCAAATGTGTGCTCTTGTTTTATAG
6	EXON 6	10,030,599	10,030,710	-	-	112	ATATTATGCCTTAGAAGTCTCATATTTCAAATCATCTTTGGATCGTAAACTACTTGAGCT TTTGTGGAATAAATACTGGGTGAATACCCTGAGTTCCTCTAGCTTGCTTACT
	INTRON 6 - 7	10,027,252	10,030,598			3,347	GTAAGTACTGGACTTGTTTCATTTG..........TGACACAGTCCCACTTTCTCCACAG
7	EXON 7	10,027,198	10,027,251	-	-	54	AATGCAGACTACACCACAGGCCAGGTGTTTGATTTGTCTGAGAAGTTAGAGCAG
	3' upstream sequence						TCGGAAGCCCAACTGGGACGTGGCAGTTTCATGTTGGGCTTAGAAACACATGACCGCAAG TCGGAAGACAAACTTGCCAAAGCTACTAGAGACAGGTAAGGACGTGTGCAGGGCTCCTGC CCTGACTCTCTCAGAATTTACCAATAGTAGATTCTGATTGCTTATGGTTACCTTAGTGCA CCTTAGGATGACGTCTGATGATTATTTGCTTAGCCCTTTTTAAAAGTCACGTGTAAATTT TAAATTCACACTTTGAAATTTTAGGGGATGTTAGGCAAAAGAGAAAGTTCAGCTCACAGA GCTAGAAAGATCATAGATGATGCCACTTCACCCTGTCTAGGTTTAGCCACGGGTACGAGG AGAGTTGGTCCCTGACTATACCTTTTAGGCGGGAATGGGGCTGGGGGAGGCTTAAGAGGC TGAAGGATTAAGATTAAATTAAGATTTCTTTAGTTTGCCAAATTTCAGATTCCAAAGTAT CATGGAACAGATTTCCTCTGTTAACACCTTGGGCTACAGTTATTCTTTCTGCAATTATCT TACTATCCCATGTTTTACTTCCTGAGTATCTCCTTGCAGTGTAGTCTCTGACAACTTAGA TGTAGCCTTCTGATGCATATACCAAACGGGGTTTAAAAACTAAGATTTACTGCTACAGAA ACTTGAGTTTCAATATGCTGTAGGCAGGAGGAAGATAGACCGTTTGGGCAGGCGAAAGCT GGCCTGTTCATTCCTCTCTACTTCAGCATCATTCTGTAAGGCTCTAGGGCTCACTCTTTG GCCCACTGGCCCATTTCCACTCCTGGGGGTGATGTTTTCCTTATTTTCATAAGCCCGTCT GTTTCTATTCCTTGCCAAACTTGAAACGCATGACTTTCCTCCATCTCTTGGCGCCTGGCA GGATTTCCACCTATATTATGTTTTTCTCTTAAACTCCAATAAAATTGTCTTTGAGCATTT TTTAAAGGGGCGGGGAGATTGTTCCATAGGAAGAAAGGTG..........

Sequence Detail Report

Gene Symbol (Gene ID)	Cops5 (ENSMUSG00000025917)
Transcript ID	ENSMUST00000186528

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 49 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information