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Target CDS Information

Gene Symbol (Gene ID) Nck2 (ENSMUSG00000066877)
Cross Reference
EMBL AC107865, AC108914
GO GO:0001771, GO:0005783, GO:0007015, ...show all
goslim_goa GO:0002376, GO:0003674, GO:0005575, ...show all
MGI_trans_name Nck2-007
OTTP OTTMUSP00000066779
OTTT OTTMUST00000120792
UniParc UPI0004620FD5
Uniprot/SPTREMBL A0A087WQT7
Vega_transcript Nck2-007, OTTMUST00000120792
Vega_translation 179152, OTTMUSP00000066779
Definition protein_id:ENSMUSP00000140338
translation:
MTEEVIVIAKWDYTAQQDQEL

Chromosome 1
Length
Position(start - end)
63
43,533,568 - 43,533,632
Orient to Chromosome plus
Link Location : (1:43533568-43533632)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Nck2 (ENSMUSG00000066877)
Transcript ID ENSMUST00000187435
Reports
substitution
cSNPs0
Insertion83
Deletion98
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000187435)
MTEEVIVIAKWDYTAQQDQEL
MSMv4 transcript
MTEEVIVIAKWDYTAQQDQEL
homology100.00 (21 / 21)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Nck2 (ENSMUSG00000066877)
Transcript ID ENSMUST00000187435
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GCTCAAGCTCTGCCCAGTCTCCTTCTGGCTTCCTTCCGATCAAGATGTAG
AACTCTTGGCTCCCCCAGCACCATATCTGCCTGCATGCTGCCCTGCTTCAGACCATGATG
ACAATGGACCGAACTTCTGAAATGGTACTCCAGCCCCAATGAAGTATTTGCCCTTATAAG
AGTTGCCTTGGTTATGGTGTCTCCTCACAGCAATAACACCCAAACTAAACTAAGACACCT
AGCTGCATATGTATCAAAAGATGGCCTAGTAGGCCATCACTGGAAAGAGAGGCCCATTGG
ACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGTGGGAATGGG
TGGGTAGGGGAGTGGCGGGGAGGGTATGGGGGACTTTTGGGATAGCATTGGAAATGTAAT
TGAGGAAAATACGTAATAAAAAAAATGTGGAAAAAAAACCTAAGACACCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACA
CACACACTGATCTATCATCTATGGATTTAATTGGGGGCTTGCTTACAATTCCAGTGGCTT
GGTCCACTGTCATCACGGTGGGAAGCTTGGTAGCAGCCAGGCATGTTGCTAGGGAAGTAG
CTGAGAGCTATACTCTGATCCACTGTGCAGCAAGCACACAGACACCCAGACACACAGGTG
CTGGCTAAGTTCAAAGCTTACTCCCAGTGACTCATCTCCTCCAACAAGGACATACCCTCC
TAATCTAAATAGTTTACTAACTGGCCTGCAAATATATGAGCCAAGGGGAGTCCTTCTTGT
TCAAATCTCCCTGGAGATCTTACACAGAATCAGTGAGAGGAGTCTGAGGCCACTTTTCAA
AGCAAAAGCTTAAAAACTGTGTCCATATCGTCTTACTTATTTAGCATAAACTAATTTTAT
GTAGGGCTAAACTATTGGTTAGAGTTCTGCCTTCATTGTTGTAAAGCTAG
1 EXON 1 43,444,579 43,444,706 - - 128
ATAGTAACAAAGATGAGGTCTGTAACAAAGAACGGATGAAGCTAGCATCTCCGACTGGAA
GAGACTGTTGGGTGTGCTGATTTTGTACAGGATGCCTCCCAGTGCCCTCGTGTCAGGCTA
CGTGCCAG
INTRON 1 - 2 43,444,707 43,509,620 64,914
GTACTTAACATAGAAGGCAGGTAAA..........TGTGTTCCTTTTAATTTCTCTGCAG
2 EXON 2 43,509,621 43,509,783 - - 163
ATCCCACGGGTTCCTCTCCTATAGTGTCATCCCAGCTGGCTTAAGAGCTTGGACGATCAC
TATAGCTCTGTCACCTTCAAGGTGTCCTCAGACAGCAGAAAACCTCATCTTTTTGAAGAG
TGCTACAATTTTTCCAGTCACCTCTTGTAACTGCGTGCCAAAG
INTRON 2 - 3 43,509,784 43,533,551 23,768
GTAAGCCTATACATTTCTGCATAGA..........GCATCTTTAAATGTTTTGCTGGCAG
3 EXON 3 43,533,552 43,533,632 - - 81
AAGGACTCCATGAAAGATGACAGAAGAAGTCATTGTCATAGCCAAGTGGGACTACACTGC
CCAGCAGGACCAGGAGCTCGA
3' upstream sequence
CATCAGGAAGAACGAGCGGTTGTGGCTGCTAGATGACTCCAAGACGTGGTGGCGGGTGAG
GAATGCGGCCAACAGGACAGGCTACGTGCCTTCCAACTATGTGGAGCGTAAGAACAGCCT
GAAGAAGGGCTCCCTGGTGAAGAACCTCAAGGACACACTAGGTGAGTGTCCATACCCACA
GGAACACTCAGGATAGCACTGTTGCTTCAGCGTGTGTGTATCTGTATGTGCCTGTGTGCG
TGCGTGTGTGTGTGCGTGTGTATGGGGTGTGTGTGTATGTGTATGTAGTGTGTGTGTGTT
TTGGGGCCAAGTGTTAATGTTGATAGCCTCTTCCTTGTGTTTTATATTGAGATCAAGATA
AAGACTCTCCTTATCATTTTCTGGATAAGTTATACAGTTTGGGATCTTGGGTAAATCAAC
TCTTCTGTGTGCTATGGACCCCTACACAGTTGTCTGTCTCTTTGTAGAGGACCCTGACTT
AGAATCATGACAAGTTCAGTAGTTTTTCCTGTCAGTGTGCCAGCCTTTTATCTTACAAAC
TCCCGTGCATTGGCCTCTGTGCACACAGAAGGAGAAGGCGCTTTCCCCTCGTCTTAGTTG
ATAGGATATTTTATTCCACAGTTTCAGGCAGTTAATGTGTAGTTGTGGTGATTAGCAACA
TGACATCAGAAGCCTCTCAAATGGACCCCTCCATCAGCCCTGTTTGGTTATCTCGTTCTT
CACAGTTGTGCCTCTTTTCTTCCTCTGGTATATTAGTTCCTTTCTTGTCACTGTAACAAG
CTACTTGAGGTTAGGTTACTTTATAAAGAATAAGGCTTAATTTGGCTTACACTCATGGTC
CAAAGTCAAGTGGCTGTGTTTGTATTGCCCTCTTGGCAAATTTTCAGTGTGGTGTAAGTA
CAATATGGCAAGAGACTAGAGGAGATAGAGAATTGACTGTGTGTGTTTTCTGATACTGTT
CCCTCTGTAAACACCAGTATTTATGCAGTTTCTATCACCC..........

Sequence Detail Report

Gene Symbol (Gene ID) Nck2 (ENSMUSG00000066877)
Transcript ID ENSMUST00000187435
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 21 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information