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Target CDS Information

Gene Symbol (Gene ID) Tfap2b (ENSMUSG00000025927)
Cross Reference
EMBL AC132356, AK028906
Fantom 4732469D10
GO GO:0000122, GO:0000979, GO:0000981, ...show all
goslim_goa GO:0000988, GO:0001071, GO:0003674, ...show all
MGI_trans_name Tfap2b-002
OTTP OTTMUSP00000067532
OTTT OTTMUST00000123884
protein_id BAC26188.1
RefSeq_mRNA NM_001286340.1
RefSeq_peptide NP_001273269
RefSeq_peptide_predicted XP_006495554.1, XP_006495556.1, XP_006495557.1
UCSC uc007akq.2
UniParc UPI00000E9174
Uniprot/SPTREMBL Q8CE69
Vega_transcript OTTMUST00000123884, Tfap2b-002
Vega_translation 178805, OTTMUSP00000067532
Definition protein_id:ENSMUSP00000140213
translation:
MHSPPRDQAAIMLWKLVENVKYEDIYEDRHDGVPSHSSRLSQLGSVSQGPYSSAPPLSHT
PSSDFQPPYFPPPYQPLPYHQSQDPYSHVNDPYSLNPLHQPQQHPWGQRQRQEVGSEAGS
LLPQPRAALPQLSGLDPRRDYHSVRRPDVLLHSAHHGLDAGMGDSLSLHGLGHPGMEDVQ
SVEDANNSGMNLLDQSVIKKVPVPPKSVTSLMMNKDGFLGGMSVNTGEVFCSVPGRLSLL
SSTSKYKVTVGEVQRRLSPPECLNASLLGGVLRRAKSKNGGRSLRERLEKIGLNLPAGRR
KAANVTLLTSLVEGEAVHLARDFGYICETEFPAKAVSEYLNRQHTDPSDLHSRKNMLLAT
KQLCKEFTDLLAQDRTPIGNSRPSPILEPGIQSCLTHFSLITHGFGAPAICAALTALQNY
LTEALKGMDKMFLNNTTNRHTSGEGPGQRAPRV

Chromosome 1
Length
Position(start - end)
27,461
19,209,168 - 19,236,630
Orient to Chromosome plus
Link Location : (1:19209168-19236630)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tfap2b (ENSMUSG00000025927)
Transcript ID ENSMUST00000187754
Reports
substitution
cSNPs0
Insertion17
Deletion25
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000187754)
MHSPPRDQAAIMLWKLVENVKYEDIYEDRHDGVPSHSSRLSQLGSVSQGPYSSAPPLSHT
PSSDFQPPYFPPPYQPLPYHQSQDPYSHVNDPYSLNPLHQPQQHPWGQRQRQEVGSEAGS
LLPQPRAALPQLSGLDPRRDYHSVRRPDVLLHSAHHGLDAGMGDSLSLHGLGHPGMEDVQ
SVEDANNSGMNLLDQSVIKKVPVPPKSVTSLMMNKDGFLGGMSVNTGEVFCSVPGRLSLL
SSTSKYKVTVGEVQRRLSPPECLNASLLGGVLRRAKSKNGGRSLRERLEKIGLNLPAGRR
KAANVTLLTSLVEGEAVHLARDFGYICETEFPAKAVSEYLNRQHTDPSDLHSRKNMLLAT
KQLCKEFTDLLAQDRTPIGNSRPSPILEPGIQSCLTHFSLITHGFGAPAICAALTALQNY
LTEALKGMDKMFLNNTTNRHTSGEGPGQRAPRV*
MSMv4 transcript
MHSPPRDQAAIMLWKLVENVKYEDIYEDRHDGVPSHSSRLSQLGSVSQGPYSSAPPLSHT
PSSDFQPPYFPPPYQPLPYHQSQDPYSHVNDPYSLNPLHQPQQHPWGQRQRQEVGSEAGS
LLPQPRAALPQLSGLDPRRDYHSVRRPDVLLHSAHHGLDAGMGDSLSLHGLGHPGMEDVQ
SVEDANNSGMNLLDQSVIKKVPVPPKSVTSLMMNKDGFLGGMSVNTGEVFCSVPGRLSLL
SSTSKYKVTVGEVQRRLSPPECLNASLLGGVLRRAKSKNGGRSLRERLEKIGLNLPAGRR
KAANVTLLTSLVEGEAVHLARDFGYICETEFPAKAVSEYLNRQHTDPSDLHSRKNMLLAT
KQLCKEFTDLLAQDRTPIGNSRPSPILEPGIQSCLTHFSLITHGFGAPAICAALTALQNY
LTEALKGMDKMFLNNTTNRHTSGEGPGQRAPRV*
homology100.00 (454 / 454)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tfap2b (ENSMUSG00000025927)
Transcript ID ENSMUST00000187754
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TGTTATTTATGCTTTGAAAATATTTTTTAAAAAACTAAACTTCAAAAAGC
ACATATTCAAAAGAAAATCTACCCCAATGCAAAATGGCCAAACAATATTTGCTCTTGTAC
ATCTTAAAACATTTCCCACTGTTTCCTTAAACAGTACAAAGCTTAAACCTTCTCAAAGAT
TTGGGTGTTCATGTCTCAAGTCTATCAGATTAAAATCACAAATTACAGGCAATAAACCCA
AATACAAAATGTTCTATACCCCTGTTAAAGGTCTCAAGATTAACATTGTGTGCTTTGTTG
TTTCCAACATGTAAAGGAAGAGAAAAAACTTAATAAAATGGAGACTCCAGGCAAACAGAA
AGACACCAAGGAACCACTAAAAATATAGAACAATCCCTAAAGCAACAAGCAATATAGATT
GTAGGGTCCACAAGATATTCAAGTTTCCAAATGTGTTAGACACAATGAGCAAAATATCAG
AAACCATTGTGGTAAATAGCGGTGTTATTCTTGTTCCACAATGATACTTTTATAAGGTTG
CATCAATAGAGAAATATAACTCAAAGTCAAAAATCTAGTGGTGTTTTTTTAATGCTCCCC
TAAATATACAAGAATAGGAAAACTGTCTTTAAAATCTCAGTAATGGTTCTCCTAAAAGAA
AAAAAAAAAAAACTATGTAGAAAATTTGGGGGCTGATGTGCGTGGTTTCTCATTGTCAAT
TATTAAAACACTTTAGTTAGTGGCTGCATTGATTCGCCATTTTCAAAACAGATTTTTAAT
GTATCTATTTATATTTCTCGTTTTGAACCACTATATTCCCTTTAAATGCACGGTTAGTCT
GTGGATTCTGTGACCCAGAGGTGTTTATGTAACTAATGTGACTATCTGCGTGTAAATTCG
TGTTTATGATTTTTTATAATATATATGTGTGCATGTGCGTGTGTGTGTGTGTGCGCGCGC
GCGCGCGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
1 EXON 1 19,208,960 19,209,248 - 0 289
ATGCGTGCGCGTTGTATCTAAGTCCTGTGTGCAATAATGTTTTTCTGTCTGCTGAGGCTT
ACTTCTCCAGCCTATTGTTTGAGACAACAGATATAAGTTGCGATGGGAGAGGAGCGTCGG
ATTTGGTGTGTATCCCCCATTTCCAATTATAGATGGATCATTACAGACAGCGGAGTCCTG
AGAAACCAGACATCTGCTCCTCACATGAATGCACTCACCTCCTAGAGACCAGGCTGCGAT
CATGCTCTGGAAACTCGTGGAGAATGTCAAGTACGAAGACATCTATGAG
INTRON 1 - 2 19,209,249 19,213,950 4,702
GTGAGCGGACACCCCAGATGCATTT..........CCTTCGCTCCTCTCTCGCCTCCCAG
2 EXON 2 19,213,951 19,214,409 0 0 459
GACCGGCACGATGGCGTCCCAAGCCATAGCTCGAGACTCTCTCAACTGGGCTCTGTGTCC
CAAGGACCCTACTCAAGCGCCCCGCCGCTGTCCCACACGCCATCATCGGACTTCCAGCCA
CCCTACTTTCCGCCCCCCTACCAGCCGCTACCCTACCACCAGAGTCAAGACCCGTACTCC
CACGTCAACGATCCCTACTCCCTGAACCCTCTGCATCAGCCCCAGCAGCACCCGTGGGGG
CAACGGCAACGCCAAGAAGTGGGCTCAGAAGCCGGCTCTCTCCTGCCCCAGCCCCGGGCA
GCCTTGCCCCAGCTCTCCGGCCTTGATCCCCGAAGGGACTACCACTCTGTCCGCCGGCCG
GACGTGCTGCTGCATTCCGCACATCACGGCCTGGACGCCGGCATGGGCGACAGCCTCTCG
TTGCACGGCCTTGGGCATCCCGGCATGGAAGACGTGCAG
INTRON 2 - 3 19,214,410 19,219,192 4,783
GTAATTCCAAACAAACAAAAATAAA..........AATGACAATGTTTTTATATTCACAG
3 EXON 3 19,219,193 19,219,253 0 1 61
TCAGTTGAAGATGCCAATAACAGCGGCATGAACCTATTGGACCAGTCAGTCATTAAAAAA
G
INTRON 3 - 4 19,219,254 19,226,435 7,182
GTATGGATTGTTTCTTCCAAAAGTA..........TTTCCCTTTCTCCATCTCTCCCTAG
4 EXON 4 19,226,436 19,226,655 1 2 220
TTCCTGTCCCTCCCAAATCTGTGACTTCTCTAATGATGAATAAAGATGGCTTCTTGGGAG
GAATGTCAGTCAACACCGGCGAGGTATTTTGCTCAGTCCCGGGCCGTTTATCTCTACTCA
GTTCAACTTCAAAGTACAAAGTCACTGTGGGCGAAGTTCAGAGAAGGCTCTCGCCCCCTG
AATGCCTCAATGCATCTCTCCTGGGCGGCGTCCTCAGAAG
INTRON 4 - 5 19,226,656 19,228,441 1,786
GTAAACAAAATAAAACAAACAACAA..........AGAATGTTAATTCTCACCACTGCAG
5 EXON 5 19,228,442 19,228,560 2 1 119
AGCCAAATCGAAAAATGGGGGGAGATCCTTGAGAGAAAGGCTAGAAAAAATCGGTTTGAA
TTTACCCGCGGGCAGGCGCAAAGCAGCAAATGTCACGTTACTCACCTCACTGGTAGAAG
INTRON 5 - 6 19,228,561 19,231,012 2,452
GTAAGCAAGACTTGTGGCCATTTCA..........TGATTCTTTGTTGCTCTCCTTACAG
6 EXON 6 19,231,013 19,231,154 1 2 142
GGGAAGCTGTTCACTTAGCTCGGGATTTCGGGTATATTTGTGAAACAGAGTTTCCTGCTA
AAGCCGTGTCCGAGTATTTGAACAGACAGCACACGGACCCCAGTGACCTGCACTCCAGAA
AGAATATGCTGCTGGCCACCAA
INTRON 6 - 7 19,231,155 19,234,049 2,895
GTGAGTTTCCAAGTCTCTGGGCGAT..........GTCTTCTTCCCTCACCCCTTCTCAG
7 EXON 7 19,234,050 19,234,306 2 1 257
GCAACTTTGTAAAGAATTTACGGATCTGCTGGCTCAGGACCGGACACCGATCGGAAACAG
CAGGCCCAGCCCCATCCTGGAGCCGGGCATCCAAAGCTGTCTCACGCACTTCAGTCTCAT
CACGCACGGCTTCGGTGCCCCGGCCATTTGCGCTGCGCTCACGGCCCTGCAGAACTATCT
CACCGAGGCGCTCAAAGGCATGGACAAGATGTTCTTGAACAACACCACTAACAGGCACAC
GTCTGGGGAAGGCCCAG
INTRON 7 - 8 19,234,307 19,236,607 2,301
GTAGTAAAACTGGCGACAAGGAGGA..........AAAACATCGTCTCCTTTCCTTGCAG
8 EXON 8 19,236,608 19,238,083 1 - 1,476
GGCAACGCGCCCCACGCGTGTGACATCGAGAGACGCGATGGATGCGCCTTGCTCTTACTG
TGCAGGTCCTGGGAACATGTGGGCCACTGAAGCCCAGTGGTGTTGAGGACATAGAATCAG
CAGCTGCTGAGGGCGCGAGCCGTACAGGCCCTTCTTGCTCTCGGCCTCACCCTAAGGGCT
AAGGCAGCCGCGAAGGGCCGGTTCCCGAGTAGGTAAAGGGGCGGCGCCCCACTGGCTGCT
GCGGGGGAGGGATGCCAGAGCTCTGTAAAGCCATTTTGCCGCAAGCGGTCACTAGGGGCT
CTACTCTCAGAGACCTTGTAGCTTGGAAAAGTCCATGGAATTTGAAACTTCCATGTGTTC
TTTATTGCCAGGAAGTGTGGATATTTTTTTTAATTGCCTGAAGTGTGGACATGAAATAAG
AACTGTCATTCTTGGGTAGGTAGGCTCCCTTAGATGCCCTGATGTTCCTGTGAGCATCAG
CGAAGGGGCAGCTAGATAGACCTGGCTTGAGGCTTCCCTCCCCCATCTCCGGGGTTGTCT
TCTGTTTCTGTTCTTTTTCTCTCTCTTCACGTCGGACCTTTCGCCCCCATGCTTTCCTTA
GCCAAGCCGGCTACATTTATCTGATAATTGAGTTATTAAAAGATTTGGTTTCCTTGGATT
TATAAATCAATAAACAGTAGGATTAACGCAAGAGTTTGCCTTTTAAGTCAAGGAAAAACG
TTTAAGGTCAGGCCCTTTGAGTTTTGTTTTCAAACCAAACAGGTGAGTTACAGTCCTATA
CTCTCCCCTGCACTCTGTAGATGGCTTATCTTATCTAGGCCCGCTCCCACCACCCCCAAG
CCCTACCAAATGCCGGGGGTCCAAAACCAAATAGCTAAAGACTGAAGCATAGGCCGGTGA
CTGCTGGAGTTCCCCCAAGGTCCTTGGAGCCCCTTCTTTTTGAATCAAGCATCCTCCTAC
TTTTATTCTGAGTCTCATGGAGTTTGTTCCTAGGTGAGGATTCCCTCTCCAGAGACCTTT
AATTTTCATCCCAACTACGAAGTAACTTTCTTTTCTTCTTTTCACCAACTTATCTTGCCC
CCCCCCACTTCCTCACTTCCCCACTTACCTGCCCAAAACCTACTCCTTCTTCCATAGCTT
TCTCCACCCCCATATAAAGAGCTCAACGGGCTTTTGAAGATCCGACCTTTGTTGGCATTG
GCCAGGAACTTTCTCTTAAGCAATTATTTCATAACCTTTGAAAACTGGTCGAATGGGAAA
CCCCAACCTTCCAACTTTTCTACACACTTCGTTCATGGTTACAAGACCCCTCCCTATTTA
GAGTATTGATAGAAAATTCATCGCCATACCTGATATCCTGTACTTGTAATACATTCTGTG
GGAAGGAACTGATGACCTCAAACCATCAGACTCTGCCTCAAGTGCTCAGAGAAACAAGAG
CTTCCCTCCTTTGCTGATATACATTAAATTATTGGT
3' upstream sequence
AAAAGAAAAAAAAACCAGAAGTATTGGATTGTTTTCTTAAAACAAAACAAAACAAAAACC
CAAAAAACACAAAAAAACAACAAAAACAACGGGGTGAACACCATTTCTTCTTTAATGCCA
AAACCGTTTCTCCTTTTGAGTTGGCCTTTAATTCAGTACCATTTGTTTTGACCACCCAGT
CAAGAGGTAACAACTGCCTCTTCTCGAGGGCACTCTGGAGGGTATCTGTGTTAAGTTTGT
ATATATTTATTTATGCTTAATTTAATGGGAATGTGTAAATATGATGAGCAAGTAGTTTGG
GATTATTTATCTGTGACTCTATACCTCTGTGAATGGGTGGTTTAAAAGAAAAAAAGAACC
GCTTGACCCTAGCTAGAATCCTATTTGAATTCTTCTGTTCTTTATAGACAAGCTGTTATG
GTATTGGGTAGAAATTGGTTTATTGTCCAGTGTTAATCTGATTTACATAAATAAAAAAGA
TTGTTGTGTTTTTGTTGTGTTCTCCTCTTCAGTTCCTTAAACATAAAGATTGTTCCATTC
TACAGACAGAAACAAAGATATAGCCAAAAAGATTTCTTCCTTTTGCACCCCCGCCACAGA
CGTACATACAGTGTTTTTGTTACAACAGAAATATAATAAATTTTGCATATCAGAAAAATG
AACACTTTTATTTCCAGTAGGAGGTGCTTTTTAAAAAACTCTTAAAACTTCAAATGGATA
CTAGTCCCAATCATATTTGTAATAAAAGTTCATGTTAACTGCAACTTATTGTTTGTTTTA
CCCTTAAAAGTAAAAAGGAGTGTTATATTTACTTCCTGGGTGACTTAGAGATCCTGAATC
CAAGTCAAAGATGCTACAAGTGGGTGGCCAATGGGCTAGGTGTTCCCAAGTGGTGTTGGT
ACATATTGCAAAACTGGGTGTTGGCTCTTGCCCCTGGAGACATTGGTTCTTGGGGGGTGG
GAAGGGTTAAGTGATCCATTTTAGGATGGAATCTCTTGCT..........

Sequence Detail Report

Gene Symbol (Gene ID) Tfap2b (ENSMUSG00000025927)
Transcript ID ENSMUST00000187754
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 454 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information