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Target CDS Information

Gene Symbol (Gene ID) Khdrbs2 (ENSMUSG00000026058)
Cross Reference
EMBL AF098796, BC066814, BC132117, ...show all
GO GO:0005070, GO:0005634, GO:0006351, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name Khdrbs2-003
OTTP OTTMUSP00000067898
OTTT OTTMUST00000125038
protein_id AAD20451.1, AAH66814.1, AAI32118.1, ...show all
UCSC uc007ano.1
UniParc UPI00015E0F97
Uniprot/SWISSPROT Q9WU01
Vega_transcript Khdrbs2-003, OTTMUST00000125038
Vega_translation 178881, OTTMUSP00000067898
Definition protein_id:ENSMUSP00000140157
translation:
MGEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKVLSFEVAS
SHVKQGSSIWSPVYNMWGWRSLFSMRLAFWYHTVAQSEVTIFFHHPPASFSGHSSCVAFC
SSLCRSLSYCYTF

Chromosome 1
Length
Position(start - end)
160,909
32,172,918 - 32,333,828
Orient to Chromosome plus
Link Location : (1:32172918-32333828)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Khdrbs2 (ENSMUSG00000026058)
Transcript ID ENSMUST00000188257
Reports
substitution
cSNPs4
Insertion116
Deletion149
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num3
non-synonymous num1
synonymous substitutions 32333486 (p.Leu80Leu), 32333531 (p.Thr95Thr), 32333642 (p.Pro132Pro),
non-synonymous substitutions 32333767 (p.Ser174Thr),
B6 transcript
(ENSMUST00000188257)
MGEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKVLSFEVAS
SHVKQGSSIWSPVYNMWGWRSLFSMRLAFWYHTVAQSEVTIFFHHPPASFSGHSSCVAFC
SSLCRSLSYCYTF*
MSMv4 transcript
MGEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
SERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKVLSFEVAS
SHVKQGSSIWSPVYNMWGWRSLFSMRLAFWYHTVAQSEVTIFFHHPPASFSGHTSCVAFC
SSLCRSLSYCYTF*
homology99.48 (194 / 194)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Khdrbs2 (ENSMUSG00000026058)
Transcript ID ENSMUST00000188257
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AACATCCTAATTTCACCTAAAATAAATACTTAGGTAACACTGTGGACAGA
ATAAGAGAAATTAGGAAACTCCCAGCAGGTTTTATATACTGGGAAAGTTGTCCCAGGTGA
ATGGGTGGTAGAAATATTGACAAGGGATTGCTTGGGAAAAGATAATTTTAAAGAAAGAAT
CATTTCATTTTAAGTAGACAAGGTACAGCACAGGGGTCCCATCTGGAAGGGAAGGGTACC
TCCCTTATCCCTCCTTCCTTGGCGATGATTCTTGTGGGTAAAATACTCATTTAAATAAAG
GTGGGGCATATACAAAGTAGTTCAGCAGCATTCCCATGGCAGCGAAAGAGACCCTGATGT
CTAAAATAGGAGAACATCAGAGCGACAGAAGTTAGGCATCATCTAGCTTCTTTCATTCAC
AATTCTCCCAGCTAAGTTTACACAGTGAGTGAATTTTGCACCATAAGAATGGGTGGATCC
CTAGAACTAATTCTGTATCACGGGCAAGGTACACTGGAAGCGTTTTGCTCTACTACAGAA
TCCAGGCACTTCTTCATTTGTACATTAGTGGACATCCTTCTGCCCCAAGATATAGGTCAT
GGGAAACACAGCCCACATTTTGTCTCAGATTTCCAACCTTGCCCAAGAGTCTGCGATCAT
CCAGGGGAGAGACACCTGTGCCTTGGAGACCTAGGTGAAGTGCTCAGCCTCTGTGCTCAT
GGGGCACACATTCTTGCTCTCTCATCCTCGTGCCTGCCTGGCAGCCCGCACCCACTCCAC
AGCACTGGCCAGACCTGAGAACACGGCGGGCTAAGGCGGCCAGGAGAGTGCGCTTGCACT
TCGCACACCCCTCCCCTCCGCAGCAGCCTCCTGCCACTCAGGCGACTCGACTTGCGGCCC
CGCCCAATGATAGTCCATAGTCTCCGCGTGCGCCCCGCCCTCGGACCCCGCTTCCAATAG
GAAGCCGGCGGGGTTGGGCCGCACGGGCATCCTCTCCAGCTGAGGCCGCG
1 EXON 1 32,172,748 32,173,008 - 1 261
GCCGGAGCCTGGCTGGGGCGCGGGAGAGGCAGGTACCAGCGCGGTCTGCGCAGCCCCAGG
CGCTAGAGCTGCGCTCTCCTGTGGAAGAACGGTTCCCGGGGGAGCCAGGGACCGAGGCGT
CGGAGCGGGCGGAAATTGCGCCTGACCGGGCACGGTCCGAAGTCCGCGCTATGGGAGAAG
AGAAATACTTGCCTGAGCTGATGGCAGAGAAGGATAGCCTGGATCCATCTTTTGTGCACG
CGTCGCGCCTTCTGGCGGAAG
INTRON 1 - 2 32,173,009 32,243,899 70,891
GTAGGACCGGCTGGGCTCCTGCCAG..........TTGTGATTATTATTTTTTCTTTCAG
2 EXON 2 32,243,900 32,244,027 1 0 128
AAATTGAGAAATTTCAAGGTTCAGATGGGAAAAAGGAAGATGAAGAAAAGAAATATCTCG
ATGTCATCAGCAACAAAAACATAAAGCTCTCTGAAAGAGTATTGATTCCTGTGAAACAGT
ATCCAAAG
INTRON 2 - 3 32,244,028 32,333,465 89,438
GTACTGCATGCATGCAGCATGTACT..........CACATGCTGTTTTTTTTTTTTTCAG
3 EXON 3 32,333,466 32,338,354 0 - 4,889
TTCAATTTTGTGGGGAAATTACTTGGACCAAGAGGAAACTCCTTGAAGAGGCTACAAGAA
GAAACAGGTGCTAAAATGTCTATCCTGGGCAAAGGGTCCATGCGAGATAAGACAAAGGTA
CTGAGCTTTGAAGTTGCTTCTTCTCATGTTAAGCAGGGCTCCAGCATCTGGAGCCCAGTT
TACAATATGTGGGGATGGCGTTCCCTGTTTTCTATGAGGCTTGCTTTCTGGTACCACACT
GTTGCCCAGTCTGAAGTCACTATTTTCTTCCATCATCCCCCTGCCTCCTTCTCAGGACAT
ACTTCCTGTGTTGCCTTTTGTAGTTCTCTTTGTAGGTCACTGTCATATTGCTACACTTTT
TAAATGCTCGGTGGGACGGTTCTCCATTTTGGTACTTGTTTGTTTTTAATTTTAATGTTT
CTAATATTTCCTTTTTTAAATTGGATATTTTCTTTATTTACATTTCAAATGCTATGCCCT
TTCTCAGTTTCCTGCCCTAAAAGCCCCTATCCCATACCCCCTTCCCCTGCTTCGAGGAGG
GTGTTCCTCCACCCACCCAGCCAATCTCCCACCCACCCACTCACCCACTCCTGCCTCTCC
ACCCTGGCATTCCCCTACAATGGGGCATGAAGCCTTCACAGGATCAAGGGCCTCTCCTCC
CATTGATGCTCAACAAGGACATCCTCTGCTATATATGTGGTTAGAGACATGGGTTCCTCC
ATGTGTATTCTTTGGTTGGTGGTTTCGTCCCTGGGACCTCAAGGGGGTCTGGTTGGTTCA
TATTGTTCCTCCTGTGGGGCTACAAACCCCTTCATCTCCTTCAGTCCTTTCTCTAACTCT
TCCAATGGGGACCTCATGCTCAGTCCAATGGTTGGCAGCGAGATTTTGCCTCTGTATTGG
TCAAGCTCTGGTAGCCTCTCAGATGACAGCCATATCAGGCACATGTCAGCAAGCGCTTCT
TGGTGCCCTCATTAGTGTCTGGGTTTGGTGAACATAAATGTGATGGATCCCCAGGTGGGG
CAAAGGTTGGGTTTTTAAATTCCCTAGCTGGATACTTTTCCTTCTACTACCACATAATGC
CATCCATTGCTCCTTGGATCCTCTTCAGTATTTCACTTGGATCCCGTTTGCCGAGGTTAT
GCCATATATTTATCAGAAAACGGGAGAATCCTGGTTTTGCCGTGAAGGGTTTCAGTGGTA
TTTATTACATGCATCATCTGACCCGAAGGCCACAACACGCTAAGGGACATCAAGTTTAAT
GTTTGTAATAATTTATTTCACATCTGAACCACTTTGCTCCTCACTTTCTAAACTGGTAGA
AATTGTTCAGTTAGAATTCAGGGTTTGTGGAGATGTATTCATGAGGAATCCTAAGAAATA
ATTTGGTAAGCAGTGGAATGGGTGCAGTTGCATCTTTCGGACAAACTGTATTTTTTATCC
TTTCATATATTACAGTGTTCTAGAAAATGAAAACCTCAGGTTTGACTTTGACTTAGAAAA
TCATGTATGGCTTTTAGCTTTAAATGATCGAGGAGAGATCTTAAATGAATGAATTTCAAA
TGAAAAATGTCACTAGTCTGGTCAAGAATTTCATAATTTTTGTAATAGTAGTTTCAGAAA
TGAATAAATTGTGGCCAGGCACCTCCATTCTAGTTACTCTAGTCCTATTTAGAAGAAACA
ATGTAAATATTTAAGAGCTTCTTGCTATAAGATGATTCCTTGCCAGTTGTCACATACAAC
CCAGTTTATATTTTCTTCCTAAACAAGATGAAATTTATACATTTTAGTTATATTTTCAAA
GATTCTTTAATATTTAATTACTTATTATAAAACCTTATATCTGAATTTCTTATTTTCTCC
AGCTGTGTCATGTTCTTATAAACTGTGTGCTTTTCCCAGGATTAAGGATTAGATTAGACA
TTATATCTCTTGGAAAGTTTAGTGAACCATTTAGTATCTTGACATCTTTGTTGTACTGAA
GACATAGCTGACTGATTTATCTGCATATCTCATTGAAGTCTTCACTTTCCCAGAATGGAA
TTGGCCTGATTAGCATTGCACATTAGGGACCTCCATGCCATCTCTTCCTGACTTTTAAAA
TGGATAAGTGCATTTTTTCATCTCTATATAGTTGAGCATTGTGCTGTTCATAAAGTACCA
AATTGGATGCCCTTCCCTATAAACATGTTAGGTACCAGTAAAATTCTAAAAATCCAATAG
GAAATATATTTGCTTCCATTAAATTGCTATTGAGTTTAATTTAGCAAAGTTTTTTATTAC
TTAAAATTCTGTTTCTAATTAAGTTATGTGACCCTCCCAACATAGTTGGTTCTGCTTGGA
ATGTTTTTGGTTTGTGCTACAAAATTAAATATAAAAAAATACAGTGAAACAAAATGAGGT
GATTAATAATAATGTTGCATCATACTATGCAAAAGATTTTTCTCACATTAGGCCATGACT
TTCAATAGTAGTAGATTTTCAATAGTAGTCGACATCACATACATAAAATTAAAGGGTCTT
TTTAGTATACATTTGACTAAAATAAATTCTCAATAAGTTATTGATGACTCTATTGCTACT
TTGCCTCTTAATAACATGACCTGGTTTCATATGGTTTGATATTTTAAAATATATAATTAA
AATTCATCTAACTTTTCAATGAATATATATATATATGTGTGTGTGTGTGTATATATATAT
ATATATAGTCAGCCATTTTATAGCCTTGAATACATGTAATAATTTCGATAGTATTCATTA
AACAATATATGATCAGTTTATAAATAATGTTTTTCCTCTTAGAATTTATATTCTGATGAA
GAGGCAGACAATGTGTGAGTACAGTTTGAACTGTGATAGTTTGATAATTATTAGAATTTA
GAAAACTGGAAAAGAGAAGAAATGAGTAATAGTGAAAGCAGTGATTTGCCACAGGGATAA
AGATAATTGCCAGGTATCAAGAACCAACCATGAAACACGAAGAATTGAGAGAAAGGGTGC
AGAGGGTAATGGTTCTAGGATGAACATGAGCCTTTCCCTTTAACCTTCTAGTAACAATAG
CAACCAACATCAGAGTTTAGTGAAACTGTTATGTTACATATATTTATGTTATTAACCCAT
AACTGGGATAACGTTTACTGCAAACTGCTTTGCACTTGACTCTCACGTATTCCTCTCGGT
ACCACTCCCCACTCTCTGCAAATATGTTCTGCTTCTCATTAGATAATTTCCAAGGCCTTT
CCTTTGATTTTTACATTCATCACATACACTGTGATATACATGCTTCTGATCCAAAGCTTC
GTTGTTGACTGCTGGTTGTCTAGTTGGCTTAGTCATGGAGTGTAGAGATTTCTTATTCAC
CAGTCTAAAATGCTGATATTAGAAGTCTAGTGGGAACTAATGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTATGTGTGTGTGTTGAGGGGAGACATTTGTGCATGCATGTGAATGATAAA
CTATGATTAACCAAGCTTTGGTCAACTTCCCCTTGTGTCCTTGCTCAGTTTGCCTTCTTA
TGCATTGCATCAGAATCAGTGCTAGTTTGATGCAGTGGTCATTAAGGAGAATGACATTTC
CCCCATTGTTTTAGATTGTTTTCCATGAGTCTGATAGCATGTCCCATAAACACCATAATC
AGAAGCAACTTGGGCAAGTAAATGGTTTAGTTTGCTTATGCTTCCAAGTCATGTTCATCA
TTGAAGGAAGTCAGAACAGGGACTCAAATTGGACAGAAATCTGGAGGCAGGAACTGATAC
AGTCTGGAGACGAGTGCTACTTGCCAGCTTGTTCCGTCTAACTTGCTCAGCCTGCTTTCT
AATAGAACTCAGCCAAGGAACCTGGAAGTAGGAACTGAAGCAGAAGGCATGAAGAAATGC
AGTTTATTTGTTTCCTCCACCTAGATTACTCAGCTTGCTTTTTTTTTATAGGAACTATGA
CCCCCCCCCCCCAACTCTTGCCCAGGATTAGTAGTACCACCCATAGTGAGCTGGACCCTC
CCACCACACATCAATCACTAATCAAGAAAATGTTTTCCAGACCAGTCTGTGGAAGTGCCC
TCTAATCCCATGATTAGCTTGTATCAAGTTGACAAAACCCTAACCAATACAAAATTTTGT
ATTAAATAAGGAAAATCTGAAGAATAATAGGGTATCCTTTATGTACTCATAGATAGAGCT
ATTTGTTCTACTCACTGTCCCTCCCATGATTGCCCCATATAATGATTCCACATTATATTA
TTCAAATAAGCCACCTACTTGAATTTTGTTCAGAAATTATCACACAGACTGTAGTTGTGT
ATTAGATATGCTACTGATAAAATGCATAATGTATGTCTTTAACTTGAATGTCATCTCATG
ATAAAATGAGATATTTGATTAATTATCTAAATCAAAGAAGAAGTGAATAAGTCACAAATA
TTTATTCTATTCTAAATATGTTATCAAAGGCAAATTCAATATTGTGTTTTATAAAATATT
AAGCACCTTTCCAGTTTTTACAAAATCTGTAATTGAATTATACTGACTGACCCATTTAAT
AATGTCCTTATAAACAATTAAGGCAAGACTGATTGTTTGCATAGAAAAACATATTGACTT
GGATTCGCCTGCAAAGACTATACAGGACCTTTAACCCTTTTGTTTAAAACAGTAAGTTTT
GAGGTTTATTCCAGAATCACTAGAAAGTTAATTGTGTAATACATCAAAGAGTTATAGAAC
TATGTCAGGAGACTTAACAAATTGAATATTTTCATATTATTTTGTTGTCATGAAGATGGG
GGAAATGGTATTTTTAAAACTTAGTTAAATTTAACCAGTACCCTTTAAGTAAGTAAGTAA
ATAAGTAGGTAAGTAAATAAAAACAAAAA
3' upstream sequence
GGGAAAACTAAAAGGTGACAATCCAGGCTAACAGCAATAGCCCGAACTTGCTTGCTAGTA
ATGGCTTATTTCCCACAGTCATATCACAGAATCTCTGAATCCAAAAGGCATACCAGAACA
AACAATCATTGTCTTTCACCAACCTATACAGATTTGTCTGCTGGACTTGGGATCTGGGAT
CCTGAAAAATTGGGGCAGACTACAGCCTAATGCTATAGACTACCTTATTTCAGTTTCAGT
GCATTTTTGTATGGTAATGCAGCAAAGCAAGCAATGGTCCAAGCAAGGGTGAGGTCAGAA
AGACGTAAACAAATGCCTGGATGCACAGGCATTGGACAGGGAATTCTTTCCCCAGAACTT
TCTCAGGACAGACCAATTTAAACACAACTGCCTTGCATTGACTATGGATTATATCTAGGA
AATCACACAAGTAAGGCAGAAGTTCATATCCAGATTCAGGGTACCCTGACCAGATTGAGT
TCTATAGCTGTGTTCTGACATTCAACAGAAAACAACATCTCTTATAAATTGAGTGTAAAT
ATATGTCTTAGAAGGCACAAAAACAAGTCCAAGAACAATCAAGAGAACAAAATGCCCCTG
AGGTAAAAGGCACTATGTCTTTCTACCTGGAGCCTCTCTCCCTGTTCTCCAAGTCATTGT
TTACCATGGGACATTCCTTTGACAGTGTTCAAAAAAAAAACCATAAACTTCTGAGATACT
GTATTTTTGGACAAATTCAGAAAACAAACAAGCAAGCAACAAAATAAAACAAACAAACAA
AAAACCAGTATGTTAACTTTATATCAAAAACACCTCAAGAGAAGTAGCTGGCAGTTTAGA
AATTTCTTGAAAGTCAAATTCCTTCATTAAACCATATGGCTAGGCAATGTTGAGTAGCCA
CAGAGCTGCAGGCTTGACTGACAGTGGCTTGCATACAGTCTTTGGGATAACTTACTGCAG
CTCCAGATGGAAGACTGCTATTTTTAGTGGAGCAGATATT..........

Sequence Detail Report

Gene Symbol (Gene ID) Khdrbs2 (ENSMUSG00000026058)
Transcript ID ENSMUST00000188257
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 194 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information