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Target CDS Information

Gene Symbol (Gene ID) Terf1 (ENSMUSG00000025925)
Cross Reference
CCDS CCDS14827.1
EMBL AK021235, BC034866, U65586, ...show all
Fantom C430006O16
GO GO:0000086, GO:0000781, GO:0000781, ...show all
goslim_goa GO:0000003, GO:0000228, GO:0003674, ...show all
MGI_trans_name Terf1-001
OTTP OTTMUSP00000067391
OTTT OTTMUST00000123359
protein_id AAB17974.1, AAB53970.1, AAH34866.1, ...show all
Reactome R-MMU-1221632, R-MMU-1221633, R-MMU-1500620, ...show all
RefSeq_mRNA NM_009352.3
RefSeq_peptide NP_033378
UCSC uc007ajh.2
UniParc UPI0000001AB2
Uniprot/SWISSPROT P70371
Vega_transcript OTTMUST00000123359, Terf1-001
Vega_translation 178751, OTTMUSP00000067391
Definition protein_id:ENSMUSP00000140744
translation:
MAETVSSAARDAPSREGWTDSDSPEQEEVGDDAELLQCQLQLGTPREMENAELVAEVEAV
AAGWMLDFLCLSLCRAFRDGRSEDFRRTRDSAEAIIHGLHRLTAYQLKTVYICQFLTRVA
SGKALDAQFEVDERITPLESALMIWNSIEKEHDKLHDEIKNLIKIQAVAVCMEIGSFKEA
EEVFERIFGDPEFYTPLERKLLKIISQKDVFHSLFQHFSYSCMMEKIQSYVGDVLSEKSS
TFLMKAATKVVENEKARTQASKDRPDATNTGMDTEVGLNKEKSVNGQQSTETEPLVDTVS
SIRSHKNALSQLKHRRAPSDFSRNEARTGTLQCETTMERNRRTSGRNRLCVSENQPDTDD
KSGRRKRQTWLWEEDRILKCGVKKYGEGNWAKILSHYKFNNRTSVMLKDRWRTMKRLKLI
S

Chromosome 1
Length
Position(start - end)
37,403
15,805,678 - 15,843,082
Orient to Chromosome plus
Link Location : (1:15805678-15843082)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Terf1 (ENSMUSG00000025925)
Transcript ID ENSMUST00000188371
Reports
substitution
cSNPs10
Insertion32
Deletion42
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num5
non-synonymous num5
synonymous substitutions 15805797 (p.Leu40Leu), 15805875 (p.Leu66Leu), 15805911 (p.Arg78Arg), 15819719 (p.Thr268Thr), 15833428 (p.Leu312Leu),
non-synonymous substitutions 15805795 (p.Leu40Ile), 15805828 (p.Ala51Thr), 15815940 (p.Glu185Lys), 15831550 (p.Thr298Ser), 15833438 (p.Arg316Ser),
B6 transcript
(ENSMUST00000188371)
MAETVSSAARDAPSREGWTDSDSPEQEEVGDDAELLQCQLQLGTPREMENAELVAEVEAV
AAGWMLDFLCLSLCRAFRDGRSEDFRRTRDSAEAIIHGLHRLTAYQLKTVYICQFLTRVA
SGKALDAQFEVDERITPLESALMIWNSIEKEHDKLHDEIKNLIKIQAVAVCMEIGSFKEA
EEVFERIFGDPEFYTPLERKLLKIISQKDVFHSLFQHFSYSCMMEKIQSYVGDVLSEKSS
TFLMKAATKVVENEKARTQASKDRPDATNTGMDTEVGLNKEKSVNGQQSTETEPLVDTVS
SIRSHKNALSQLKHRRAPSDFSRNEARTGTLQCETTMERNRRTSGRNRLCVSENQPDTDD
KSGRRKRQTWLWEEDRILKCGVKKYGEGNWAKILSHYKFNNRTSVMLKDRWRTMKRLKLI
S*
MSMv4 transcript
MAETVSSAARDAPSREGWTDSDSPEQEEVGDDAELLQCQMQLGTPREMENTELVAEVEAV
AAGWMLDFLCLSLCRAFRDGRSEDFRRTRDSAEAIIHGLHRLTAYQLKTVYICQFLTRVA
SGKALDAQFEVDERITPLESALMIWNSIEKEHDKLHDEIKNLIKIQAVAVCMEIGSFKEA
EEVFKRIFGDPEFYTPLERKLLKIISQKDVFHSLFQHFSYSCMMEKIQSYVGDVLSEKSS
TFLMKAATKVVENEKARTQASKDRPDATNTGMDTEVGLNKEKSVNGQQSTETEPLVDSVS
SIRSHKNALSQLKHRSAPSDFSRNEARTGTLQCETTMERNRRTSGRNRLCVSENQPDTDD
KSGRRKRQTWLWEEDRILKCGVKKYGEGNWAKILSHYKFNNRTSVMLKDRWRTMKRLKLI
S*
homology98.82 (422 / 422)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Terf1 (ENSMUSG00000025925)
Transcript ID ENSMUST00000188371
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AAGAAACCGAAACTCAAGGAAGTGGGGAGGGCGTTGTTGGAAGATACCAA
AGATACCAGTTAAGAGTCACAAGGAAGTGTAAAGTTAATAGAGTCACAAGGAATACCTGG
TAATTGTTAACTCTCAAGACAGCTTCTAAGAGCCCCTAACAATAGCACATTTGCATTGCA
GGTTCTGGTAATGGCCAGGGTGACTTTCTTTGAATGAGCACTCTTTGAACCCAGGAAGCG
GGTGGGTAGAGGAATGTCGCTATCTCTTTTATGATTAGCATACCTTTACAAAGGCCACAT
TCCCAAGCCTGGGCCTAAAGGCCTAGAATTCTGTTTTTACGTTGTTATACTTTCATTCAA
TGCAAACATTGTACAGTAATAGTGATCAAAATGTGGTCCTGGGACTAACAGTCTCAGCAT
TCATGGGGAACTGACTAGACTTGCGAATTCCAGGGTCAGCACCATCCTACCCGCTCACCC
CAGGCAGAACTTTAGTGAAAAATCAGAGCCCAGCAATTTCAGCTTTAATAACCCCGGATT
TCAATAAAATGAACACATAGGGTAGAAAGACAGTGTGATTACAGTGTAACAGGGTTAAAT
GCTCATGTTTATGGCGACAAGTTAAAATTTCTGGTGCTGCTGCTGCCATAACGCTCAAGT
GCTCCAGGCTGGCCTAGACTTTGTAGTTGAAGATGGCCCTAATTCCTAATCTTCCTGTCT
CCACCTCCTGAGTGCTGCTGGGATTATAGACGCGCAGTGCCATGCAGTCAAAATCTGCAG
TCAAAAACCTCTCGGTTTTAACTACCCTGTTTCCAGCGCAGATTGCATTTTTTAAAATGT
ATCTTAGCCTACCATCCAGAAGCTACACTATCCAAAACGCCTGGGCTCGGATCGACAAGG
AATTTAGCAGTTCTCAGCCAATCGGAAGCCAAGCTCCAGCCACTAGCCCACCCTAGCGAC
GCGATTGGCTGACTTCCACGCCCATCGCGAGCAAATCAGCGCACGGCGCC
1 EXON 1 15,805,646 15,805,957 - 1 312
AGCTGAGGCACTACGAGCGCTTTCGGTTTAACATGGCGGAGACGGTCTCCTCAGCGGCCC
GGGACGCGCCGAGCCGTGAGGGCTGGACAGATTCGGATTCTCCAGAGCAGGAGGAGGTGG
GAGACGACGCGGAGCTGCTCCAGTGCCAGATGCAGCTGGGGACCCCGAGAGAGATGGAGA
ACACGGAGCTTGTGGCTGAGGTGGAGGCCGTGGCTGCGGGCTGGATGCTGGACTTCCTCT
GCCTGTCTCTGTGCCGAGCCTTCCGCGACGGCCGCTCCGAGGACTTTCGTCGTACTCGTG
ACAGCGCCGAGG
INTRON 1 - 2 15,805,958 15,807,640 1,683
GTGAGTGCGGGCTGCCGGGCCGGAG..........GGTTTTTAAATTTTTTTTTTTTTAG
2 EXON 2 15,807,641 15,807,736 1 1 96
CTATTATTCATGGACTACACAGACTTACAGCTTACCAATTGAAAACTGTGTATATATGTC
AGTTTTTGACAAGAGTTGCATCTGGAAAGGCCCTTG
INTRON 2 - 3 15,807,737 15,813,040 5,304
GTAAGTATAAATTTTTTATTTTATA..........TTAACTTACTTTTCTGTTTTGAAAG
3 EXON 3 15,813,041 15,813,162 1 0 122
ATGCACAGTTTGAAGTTGATGAGCGTATTACACCCTTGGAATCAGCCCTGATGATTTGGA
ACTCAATTGAAAAGGAACATGACAAACTGCATGACGAAATAAAGAATTTAATTAAAATTC
AG
INTRON 3 - 4 15,813,163 15,815,885 2,723
GTATGAGTATTATTTTGTGTTTATT..........AAGGTTTGTCTATATTGTCTTTAAG
4 EXON 4 15,815,886 15,815,972 0 0 87
GCTGTAGCTGTTTGTATGGAAATTGGCAGCTTTAAGGAAGCAGAAGAAGTATTTAAAAGA
ATATTTGGTGATCCAGAATTTTACACG
INTRON 4 - 5 15,815,973 15,818,933 2,961
GTAATTATTTGTACTAAAACAATAG..........TCAATACATTTCTGTTGTTTTTTAG
5 EXON 5 15,818,934 15,819,083 0 0 150
CCTTTAGAAAGGAAGTTACTTAAGATAATCTCTCAGAAGGATGTGTTCCACTCCCTTTTC
CAACACTTCAGCTATAGCTGCATGATGGAGAAAATTCAGAGTTATGTGGGTGATGTGTTA
AGTGAAAAATCATCAACTTTTCTAATGAAG
INTRON 5 - 6 15,819,084 15,819,650 567
GTACACGTGTTATCTCAAGGACAGT..........CCACTTCATAATCAACCTTTTTAAG
6 EXON 6 15,819,651 15,819,763 0 2 113
GCAGCAACAAAAGTAGTGGAAAATGAGAAAGCGAGGACACAAGCGTCTAAGGATAGGCCA
GATGCCACTAACACTGGAATGGACACTGAAGTTGGTTTGAATAAAGAGAAAAG
INTRON 6 - 7 15,819,764 15,831,506 11,743
GTTTGTATGCTCTTGATGTTTGGCT..........ATTTTTTTTTTTCTTCCTTTCACAG
7 EXON 7 15,831,507 15,831,566 2 2 60
TGTTAATGGCCAGCAGTCTACAGAAACTGAACCCTTAGTGGATTCAGTATCCTCAATAAG
INTRON 7 - 8 15,831,567 15,833,400 1,834
GTAAAATATGATACTTGTCTTTGTC..........TCACAAGCTCTCGTGTTTCATCTAG
8 EXON 8 15,833,401 15,833,489 2 1 89
GTCTCACAAGAACGCCTTATCGCAGTTGAAACACAGAAGTGCTCCATCAGATTTCAGTAG
GAACGAAGCAAGAACAGGAACTCTTCAGT
INTRON 8 - 9 15,833,490 15,838,181 4,692
GTGAGTACTGTTACTGGAGCTGTCC..........TTAACGTTAGTGGTTTCATTCATAG
9 EXON 9 15,838,182 15,838,288 1 0 107
GTGAAACAACGATGGAAAGGAACCGAAGAACCAGTGGAAGGAATAGATTGTGTGTCTCAG
AGAATCAGCCAGACACTGATGACAAAAGTGGACGCAGGAAAAGACAG
INTRON 9 - 10 15,838,289 15,842,920 4,632
GTACTGTTCACTACATGTGAATAGC..........AATAACTTTTATGTTCTTTCAACAG
10 EXON 10 15,842,921 15,844,052 0 - 1,132
ACATGGCTTTGGGAAGAAGACAGAATTTTGAAGTGTGGTGTAAAGAAATATGGAGAGGGA
AATTGGGCTAAAATACTATCCCATTATAAGTTCAACAACCGAACAAGTGTCATGTTAAAA
GATAGATGGAGAACAATGAAGAGACTGAAACTGATTAGCTGAGACACTGGAGGCTGGATG
GGTTTGATTCAGCTTAATACAAGGATAAATACTTGGATCACTACACTTTGTTTACAGTTT
CCTGGTCAGTAATGATAAAGCATTATGGTGGTGGTGGGGCGGTCAGGAGGGGGAAGAGAA
AGAGAGTTTTTGTTTTTTTGGTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTAGAGGAG
ATTTGTGCTTTAAATCTATGTCATCATTATTTTCTGAATCTTTATTTTTGTAAAATATAG
ATATGTTGAACCCTACCAAATTCAGTACCCCATCCCATATTCTGTTTTAATACAAAAGAG
TCTAATAAGATTAAATGAATATATGACTATTTACGGTTTGTTCTATTCCATGTCTATAAA
CTAACCTCACAAAATGCCACCTAGCATTGAGTTTTCTGAAGAACTTAATTGGAATAATCT
TTGATGTGACTTTACTGCTGGATCTATGGCTAATGTACTACTTACTAAAGATCTATTACT
AGAGAGGTATTCAAAACAACTCATGAGTTCTAACAAGCCTAGCTTGGCTTCTCTCAAAAG
TTTCATTTAAAGGAAGTTGAGTTTTCACCAAAAATGTATTCATTGCAATATTTAATCAAA
GACTAATTAATAATTAGCATTTGAGTTTTATGTGCCATATTTAACAAGTAAAAAATAAGT
CTCGGCCGGGTGTGGTGGCGCAGGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTA
GATTTCTGAGTTTGAGGCCAGCCTGGTCTTCAGAGTGAGTTCCAGGACAGCCAGGGCTAC
ACAGAGAAACCTTGTCTCAAAAACCAAAAAAAAAAAAAGTCTCAACCTATTGAAATATTT
ATGAGAAAGTCAGCATTGTGTATTTCCTTCAAAGTGTTGTGCATTGCTTTCCTGTTCTCT
TGAATTTGCTGCCTTATATATATAATAAACAGAAGCATTAGTGGTTGCTGTA
3' upstream sequence
GACCAAAGCTGGCATCTTGAATCAGAATAGGATCTTTGTCAAGCTCACTCTGTCCACAAC
TGCCCACCTCTGTCTGTAGTTGCTCTATAACAGGGGCCAACTTGGTGTCAAACAATGCAA
TGCAGTGCAGGTCTTCACAAAAATGTGGCTGTGTGTTTCAATGTGTTTGTTTCTTGAGTT
TCAACTCAGATGTGTCTTTGTTTTACCTCATCTAGACTGGAACAACTTCAAATGGGCAGT
TTCAGGTTTGTTCAAGAAGATAGAGCTAGAGTTCCAGTGAAGCAAAACAACCAAGACTCA
GAAAAACATGGCTATATAGGCAGAATCTAGATTAAGGTTTGCATATATCCATGTGTATGT
ATGTGTGTGTGTGTGTACACACACACACACACACACATACACACATACATACATGCACAC
ACACACATACATACATACATACATACATAAGACAGAAAGGGATCCTGTGAGGGGAAATGG
TTATTGGGACTTTTCATTGAAATAAAGGTATGAGTTAGAGGATGGGGATCATTCTGAGTG
GTTGGAAGACGGATTGAACAGAACAAAATTATTGCAACATGTATAGAAATGCCACGTGAA
GGTCACTTTTATGCTAACATGGAAATATATTTTTATAAAGCACTTGAACAAGCAGCAAAC
AGAGCAAAAGGCTTGGGAAGGGAAGTTAGAAGATGGAGTGGAACGAGGGTTAGAGATCCC
TTTATACCAGGCCAAGTAATATATCTGTTTTCTGTTTTTTTGTTTTTTTTTTTTTTTTTT
TGGTTTTTCGAGACAGGGTTTCTCTGTGTATCCCTGGCTGTCCTGGAGCTCACTTTGTAG
ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAA
AGGCATGTGCCACCACGCCCTGCTATATCTGTTTTCTGAAGACTCAGGAGGATTCAACCT
GCACTTCTGACTGGTCTTCAGGTTCTGTGGAAGAATTAGG..........

Sequence Detail Report

Gene Symbol (Gene ID) Terf1 (ENSMUSG00000025925)
Transcript ID ENSMUST00000188371
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 422 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information