MoG+ -Mouse Genome database with high added value-

Target CDS Information

Gene Symbol (Gene ID)

Cops5 (ENSMUSG00000025917)

Cross Reference

EMBL	AC102570
GO	GO:0000338, GO:0003713, GO:0004843, ...show all
goslim_goa	GO:0000988, GO:0003674, GO:0005575, ...show all
MGI_trans_name	Cops5-005
OTTP	OTTMUSP00000066330
OTTT	OTTMUST00000118983
UCSC	uc033fia.1
UniParc	UPI00046210DE
Uniprot/SPTREMBL	A0A087WQA8
Vega_transcript	Cops5-005, OTTMUST00000118983

Vega_translation

178692, OTTMUSP00000066330

Definition

protein_id:ENSMUSP00000140115
translation:

MSLRRRRAPAREWSGPTSPPVSSVMAALRVYHHYFKYCKISALALLKMVMHARSGGNLEV
MGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWY
HSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPD
EGPSEYQTIPLNKIEDFGVHCKQYYALEVS

Chromosome

Length
Position(start - end)

7,322
10,030,687 - 10,038,010

Orient to Chromosome

minus

Link

Location : (1:10030687-10038010)
/

Detail Map

name	Cops5 (ENSMUSG00000025917)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cops5 note : COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) [Source:MGI Symbol;Acc:MGI:1349415]

name	Cspp1 (ENSMUSG00000056763)
type	gene
link	VEGA Ensembl MGI
xref
definition	locus_tag : Cspp1 note : centrosome and spindle pole associated protein 1 [Source:MGI Symbol;Acc:MGI:2681832]

name	Cops5 (ENSMUSG00000025917)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000027050

name	Cops5 (ENSMUSG00000025917)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000190155

name	Cops5 (ENSMUSG00000025917)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000186528

name	Cops5 (ENSMUSG00000025917)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000188619

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000191012

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000071087

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000117415

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000118263

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000122156

name	Cspp1 (ENSMUSG00000056763)
type	mRNA
link	VEGA Ensembl MGI
xref
definition	note : transcript_id=ENSMUST00000119714

name	Cops5 (ENSMUSG00000025917) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	CCDS:CCDS14818.1 Uniprot/SWISSPROT:O35864 RefSeq_peptide:NP_001264030.1 RefSeq_peptide:NP_038743 RefSeq_mRNA:NM_001277101.1 RefSeq_mRNA:NM_013715.2 Vega_transcript:Cops5-001 Vega_transcript:OTTMUST00000072996 UCSC:uc007ahe.2 Fantom:2700067H17 Fantom:I730044N10 Fantom:I830030O16 EMBL:AF065386 EMBL:AF068223 EMBL:AK012499 EMBL:AK146271 EMBL:AK151492 EMBL:BC046753 EMBL:U70736 GO:GO:0000338 GO:GO:0000338 GO:GO:0003713 GO:GO:0004843 GO:GO:0004843 GO:GO:0005515 GO:GO:0005634 GO:GO:0005634 GO:GO:0005654 GO:GO:0005654 GO:GO:0005667 GO:GO:0005737 GO:GO:0005737 GO:GO:0006355 GO:GO:0008021 GO:GO:0008021 GO:GO:0008180 GO:GO:0008180 GO:GO:0008237 GO:GO:0008237 GO:GO:0010388 GO:GO:0010388 GO:GO:0016579 GO:GO:0016579 GO:GO:0030054 GO:GO:0045944 GO:GO:0045944 GO:GO:0046328 GO:GO:0046328 GO:GO:0046872 GO:GO:0048471 GO:GO:0051726 GO:GO:1903894 GO:GO:1903894 GO:GO:1990182 GO:GO:1990182 MEROPS:M67.002 MGI_trans_name:Cops5-001 Vega_translation:178689 Vega_translation:OTTMUSP00000037726 goslim_goa:GO:0000988 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0008233 goslim_goa:GO:0016023 goslim_goa:GO:0016192 goslim_goa:GO:0043167 goslim_goa:GO:0043226 goslim_goa:GO:0043234 protein_id:AAC17179.1 protein_id:AAD03470.1 protein_id:AAF61318.1 protein_id:AAH46753.1 protein_id:BAB28282.1 protein_id:BAE27030.1 protein_id:BAE30445.1 OTTP:OTTMUSP00000037726 OTTT:OTTMUST00000072996 UniParc:UPI000000BAB7
definition	note : transcript_id=ENSMUST00000027050 protein_id : ENSMUSP00000027050 translation : MAASGSGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHCKQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSEKLEQSEAQLGRGSFMLGLETHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQINVA

name	Cops5 (ENSMUSG00000025917) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cops5-007 Vega_transcript:OTTMUST00000118981 Uniprot/SPTREMBL:A0A087WQ60 UCSC:uc033fib.1 GO:GO:0000338 GO:GO:0003713 GO:GO:0004843 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005667 GO:GO:0005737 GO:GO:0006355 GO:GO:0008021 GO:GO:0008180 GO:GO:0008237 GO:GO:0010388 GO:GO:0016579 GO:GO:0045944 GO:GO:0046328 GO:GO:0051726 GO:GO:1903894 GO:GO:1990182 MGI_trans_name:Cops5-007 Vega_translation:178690 Vega_translation:OTTMUSP00000066328 goslim_goa:GO:0000988 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0008233 goslim_goa:GO:0016023 goslim_goa:GO:0016192 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000066328 OTTT:OTTMUST00000118981 UniParc:UPI00046211E3
definition	codon_start : 3 note : transcript_id=ENSMUST00000190155 protein_id : ENSMUSP00000140054 translation : XALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKILCLRSLIFQIIFGS

name	Cops5 (ENSMUSG00000025917) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cops5-006 Vega_transcript:OTTMUST00000118982 Uniprot/SPTREMBL:A0A087WRH6 EMBL:AC102570 GO:GO:0000338 GO:GO:0003713 GO:GO:0004843 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005667 GO:GO:0005737 GO:GO:0006355 GO:GO:0008021 GO:GO:0008180 GO:GO:0008237 GO:GO:0010388 GO:GO:0016579 GO:GO:0045944 GO:GO:0046328 GO:GO:0051726 GO:GO:1903894 GO:GO:1990182 MGI_trans_name:Cops5-006 Vega_translation:178691 Vega_translation:OTTMUSP00000066329 goslim_goa:GO:0000988 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0008233 goslim_goa:GO:0016023 goslim_goa:GO:0016192 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000066329 OTTT:OTTMUST00000118982 UniParc:UPI00000EA150
definition	note : transcript_id=ENSMUST00000186528 protein_id : ENSMUSP00000140633 translation : MAASGSGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEILAAKPWTKE

name	Cops5 (ENSMUSG00000025917) (Detail)
type	CDS
link	VEGA Ensembl MGI
xref	Vega_transcript:Cops5-005 Vega_transcript:OTTMUST00000118983 Uniprot/SPTREMBL:A0A087WQA8 UCSC:uc033fia.1 EMBL:AC102570 GO:GO:0000338 GO:GO:0003713 GO:GO:0004843 GO:GO:0005515 GO:GO:0005634 GO:GO:0005654 GO:GO:0005667 GO:GO:0005737 GO:GO:0006355 GO:GO:0008021 GO:GO:0008180 GO:GO:0008237 GO:GO:0010388 GO:GO:0016579 GO:GO:0045944 GO:GO:0046328 GO:GO:0051726 GO:GO:1903894 GO:GO:1990182 MGI_trans_name:Cops5-005 Vega_translation:178692 Vega_translation:OTTMUSP00000066330 goslim_goa:GO:0000988 goslim_goa:GO:0003674 goslim_goa:GO:0005575 goslim_goa:GO:0005622 goslim_goa:GO:0005623 goslim_goa:GO:0005634 goslim_goa:GO:0005654 goslim_goa:GO:0005737 goslim_goa:GO:0006464 goslim_goa:GO:0006810 goslim_goa:GO:0008150 goslim_goa:GO:0008233 goslim_goa:GO:0016023 goslim_goa:GO:0016192 goslim_goa:GO:0043226 goslim_goa:GO:0043234 OTTP:OTTMUSP00000066330 OTTT:OTTMUST00000118983 UniParc:UPI00046210DE
definition	note : transcript_id=ENSMUST00000188619 protein_id : ENSMUSP00000140115 translation : MSLRRRRAPAREWSGPTSPPVSSVMAALRVYHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHCKQYYALEVS

name
type	misc_feature
link
xref
definition	note : contig AC102570.8 1..194371(-1)

name	Cops5 (ENSMUSG00000025917)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000072998 Vega_transcript:OTTMUST00000072998 MGI_trans_name:Cops5-003 OTTT:OTTMUST00000072998
definition	note : retained_intron note : transcript_id=ENSMUST00000139578

name	Cops5 (ENSMUSG00000025917)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000072997 Vega_transcript:OTTMUST00000072997 MGI_trans_name:Cops5-002 OTTT:OTTMUST00000072997
definition	note : retained_intron note : transcript_id=ENSMUST00000150509

name	Cops5 (ENSMUSG00000025917)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118984 Vega_transcript:OTTMUST00000118984 MGI_trans_name:Cops5-004 OTTT:OTTMUST00000118984
definition	note : retained_intron note : transcript_id=ENSMUST00000191296

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118985 Vega_transcript:OTTMUST00000118985 UCSC:uc056ycf.1 MGI_trans_name:Cspp1-016 OTTT:OTTMUST00000118985
definition	note : retained_intron note : transcript_id=ENSMUST00000190610

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000067776 Vega_transcript:OTTMUST00000067776 MGI_trans_name:Cspp1-002 OTTT:OTTMUST00000067776
definition	note : retained_intron note : transcript_id=ENSMUST00000143606

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118987 Vega_transcript:OTTMUST00000118987 MGI_trans_name:Cspp1-020 OTTT:OTTMUST00000118987
definition	note : retained_intron note : transcript_id=ENSMUST00000191360

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118988 Vega_transcript:OTTMUST00000118988 MGI_trans_name:Cspp1-021 OTTT:OTTMUST00000118988
definition	note : retained_intron note : transcript_id=ENSMUST00000191521

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000118989 Vega_transcript:OTTMUST00000118989 MGI_trans_name:Cspp1-022 OTTT:OTTMUST00000118989
definition	note : retained_intron note : transcript_id=ENSMUST00000190063

name	Cspp1 (ENSMUSG00000056763)
type	misc_RNA
link	VEGA Ensembl MGI
xref	Vega_transcript:OTTMUST00000067950 Vega_transcript:OTTMUST00000067950 MGI_trans_name:Cspp1-009 OTTT:OTTMUST00000067950
definition	note : retained_intron note : transcript_id=ENSMUST00000134716

Polymorphisms Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cops5 (ENSMUSG00000025917)
Transcript ID	ENSMUST00000188619

Reports
substitution
cSNPs	0
Insertion	15
Deletion	24
SNPs	+1kb 10038325(c.-315T>C), 10038490(c.-480A>G), 10038516(c.-506T>C), 10038517(c.-507C>T), 10038557(c.-547C>G), 10038783(c.-773C>A), 10038797(c.-787A>T), 10038886(c.-876C>A), 10038935(c.-925T>G), 10038986(c.-976C>T), 10038994(c.-984A>G), 10039009(c.-999G>T), 10039152(c.-1142G>A), 10039181(c.-1171C>T), 10039359(c.-1349A>G), 10039456(c.-1446G>T), 10039555(c.-1545A>G), 10039587(c.-1577C>A), 10039626(c.-1616A>G), 10039712(c.-1702G>T), 10039825(c.-1815T>C), 10039840(c.-1830C>G), 10040262(c.-2252C>T), 10040330(c.-2320A>G), 10040357(c.-2347G>A), 10040400(c.-2390C>A), 10040527(c.-2517C>T), 10040529(c.-2519C>G), 10040575(c.-2565G>C), 10040625(c.-2615T>C), 10040716(c.-2706T>C), 10040891(c.-2881G>A), 10041050(c.-3040C>A), 10041220(c.-3210T>C), 10041313(c.-3303G>A), 10041491(c.-3481C>A), 10041532(c.-3522A>T), 10042128(c.-4118G>A), 10042129(c.-4119G>A), 10042330(c.-4320A>G), 10042372(c.-4362T>C), 10042379(c.-4369A>T), 10042387(c.-4377G>A), 10042778(c.-4768T>A), 10042798(c.-4788G>A), 10043142(c.-5132A>C), 10043145(c.-5135G>T), 5'UTR 10038028(c.-18C>G), 10038034(c.-24G>A), 10038102(c.-92C>G), CDS 3'UTR INTRON 10031039(c.609-329C>T), 10031040(c.609-330A>G), 10031204(c.609-494A>C), 10031207(c.609-497T>C), 10031260(c.609-550C>A), 10031565(c.608+774T>C), 10031649(c.608+690A>G), 10031881(c.608+458C>T), 10031889(c.608+450C>T), 10031912(c.608+427T>C), 10032026(c.608+313G>T), 10032059(c.608+280G>A), 10032573(c.523-149A>T), 10032806(c.523-382G>A), 10033035(c.522+223G>A), 10033340(c.457-17T>C), 10033421(c.457-98T>C), 10033430(c.457-107C>G), 10033444(c.457-121T>G), 10033622(c.457-299G>A), 10033687(c.456+321T>C), 10033762(c.456+246T>C), 10034157(c.328-21G>A), 10034241(c.328-105G>T), 10034337(c.328-201G>A), 10034668(c.327+261G>T), 10034822(c.327+107T>A), 10034878(c.327+51C>T), 10034906(c.327+23C>T), 10035240(c.93-77C>T), 10035413(c.93-250C>T), 10035424(c.93-261C>G), 10035466(c.93-303A>G), 10035595(c.93-432T>C), 10035684(c.93-521T>A), 10035731(c.93-568G>A), 10035733(c.93-570G>A), 10035840(c.93-677G>A), 10036015(c.93-852G>T), 10036040(c.93-877G>A), 10036053(c.93-890G>A), 10036157(c.93-994A>G), 10036294(c.93-1131A>G), 10036328(c.93-1165G>A), 10036374(c.93-1211A>G), 10036420(c.93-1257A>G), 10036430(c.93-1267C>G), 10036446(c.93-1283C>T), 10036621(c.92+1298G>A), 10036688(c.92+1231G>A), 10036808(c.92+1111G>A), 10036900(c.92+1019T>C), 10036985(c.92+934G>A), 10037121(c.92+798A>T), 10037160(c.92+759A>G), 10037194(c.92+725G>C), 10037213(c.92+706C>G), 10037246(c.92+673T>C), 10037289(c.92+630A>G), 10037305(c.92+614T>G), 10037307(c.92+612T>C), 10037582(c.92+337T>A), -1kb 10025717(c.4970A>C), 10025776(c.4911C>T), 10026103(c.4584C>A), 10026124(c.4563T>C), 10026473(c.4214C>T), 10026516(c.4171T>A), 10026567(c.4120A>G), 10026570(c.4117A>G), 10026628(c.4059T>C), 10026634(c.4053A>G), 10026737(c.3950C>A), 10026763(c.3924G>T), 10026847(c.3840A>G), 10027411(c.3276A>G), 10027427(c.3260T>G), 10027428(c.3259G>A), 10027497(c.3190G>A), 10027504(c.3183G>A), 10027525(c.3162G>A), 10027772(c.2915T>A), 10027796(c.2891C>T), 10027837(c.2850A>G), 10027838(c.2849C>G), 10027853(c.2834T>G), 10027861(c.2826A>G), 10027963(c.2724C>T), 10027986(c.2701A>G), 10028116(c.2571T>G), 10028135(c.2552A>G), 10028180(c.2507C>T), 10028290(c.2397A>G), 10028410(c.2277A>T), 10028495(c.2192C>T), 10028636(c.2051A>G), 10028959(c.1728T>A), 10028993(c.1694G>A), 10029062(c.1625C>T), 10029078(c.1609G>T), 10029091(c.1596C>T), 10029095(c.1592G>A), 10029501(c.1186A>G), 10029562(c.1125T>G), 10029600(c.1087C>T), 10029681(c.1006A>C), 10030085(c.602C>A), 10030249(c.438A>G), 10030251(c.*436A>G),
Insertions	+1kb 10038448 (c.-439dupA), 10038774 (c.-765_-764insA), 10039101 (c.-1094_-1092dupAAG), 10039721 (c.-1712_-1711insC), 10039725 (c.-1716dupC), 10040401 (c.-2392_-2391insT), 10042916 (c.-4907_-4906insG), 5'UTR CDS 3'UTR INTRON 10032075 (c.608+263_608+264insAG), 10032268 (c.608+70dupC), 10035813 (c.93-651_93-650insGCCTGCCTC), 10037130 (c.92+788_92+789insT), -1kb 10028427 (c.2259dupA), 10028828 (c.1858_1859insCCTACTTA), 10029781 (c.905_906insGA), 10030158 (c.528dupT),
Deletions	+1kb 10038805 (c.-798_-796delTGA), 10038810 (c.-803_-801delGAT), 10039471 (c.-1469_-1462delTGTTTCGA), 10039649 (c.-1647_-1640delCGCTGCTG), 10041352 (c.-3343delG), 10041462 (c.-3458_-3453delAACAAA), 10041940 (c.-3931delG), 10042460 (c.-4454_-4451delTATC), 10042968 (c.-4962_-4959delGGGG), 5'UTR CDS 3'UTR INTRON 10031747 (c.608+587_608+591delTGTTT), 10032473 (c.523-50delA), 10033810 (c.456+192_456+197delAAAAAA), 10034579 (c.327+347_327+349delCAA), 10034711 (c.327+216_327+217delAA), 10035785 (c.93-626_93-623delCTCT), 10035910 (c.93-749_93-748delTT), 10036577 (c.92+1340_92+1341delTT), 10037233 (c.92+682_92+685delTTGG), 10037334 (c.92+584delT), 10037354 (c.92+561_92+564delAGTT), -1kb 10026700 (c.3985_3986delCT), 10026789 (c.3896_3897delGA), 10026794 (c.3892delG), 10027465 (c.3214_*3221delGTGTGTGT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	0
non-synonymous num	0
synonymous substitutions
non-synonymous substitutions
B6 transcript (ENSMUST00000188619)	MSLRRRRAPAREWSGPTSPPVSSVMAALRVYHHYFKYCKISALALLKMVMHARSGGNLEV MGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWY HSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPD EGPSEYQTIPLNKIEDFGVHCKQYYALEVS
MSMv4 transcript	MSLRRRRAPAREWSGPTSPPVSSVMAALRVYHHYFKYCKISALALLKMVMHARSGGNLEV MGLMLGKVDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWY HSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPD EGPSEYQTIPLNKIEDFGVHCKQYYALEVS
homology	100.00 (210 / 210)

Exon Detail Report

Target Strain	MSMv4 JF1v3 KJRv1 SWNv1 CHDv1 NJLv1 BLG2v1 HMIv1 BFMv1 PGN2v1

Gene Symbol (Gene ID)	Cops5 (ENSMUSG00000025917)
Transcript ID	ENSMUST00000188619


..........GATACAGACGGGCAGTAGTGGTGCACGCCTTGAATCCCAGCACTCAAGCA
GGCAGCTCTCGAGTTTGAGGCCAGCCTGGACTACATAGTTCCAGAACTGCAAAAACCCCG
GGGTCCAGGTGAAGCAGCTACAGAGCCTTCTAATTCCTGTGAAGGGGCAGTTATTGACGA
AGAGTTAAGGAAAGGCATCTCCGAGCTGTGCTTTTTAAAATCTGGGTGCTCTAAAGCAGA
AATGTCAAGAAGTGCATTTCAAGCAATGCCTAAAAACTAATATATTACTAAGCCAAGGAA
AAAAGTTCTAATAGAATGAAAAACTGGGTTGGGGGAGCTAAAAGAAGATGATGAAGCTGG
AGAAGTCTTTAAGAACCGTGTTACGAAAAAAATTAAATATATTAGAATTAAATAAAACAC
AAATTTCATGCATGCCTTCAACTTACAGTCTAGTGGGCAATTGGGGATGAGAATGTGAGG
GAAGAAAACCTAAAAATACGACTGAAACAAATTTCACATTAACTGCTGGAAGGCACAGGT
TGCGGAGATTAAATCTGCACTGAGACAAACCTTTTTTAAAAAGTAGCGCCTAAGGCATTC
ACGGCTCCTAACACTTGTATAAAATGTTACCCTATAAAGTCCTCAAAAAAGTTAATCTTA
GCAACCGGTGACTTTTGCTTGCCACCTCGCAACAGTAGCGAAAACACAAAAGCGGAACGC
CAACCACAAACCCCGGAGGCTTAACACACCGCAAATTATCTTAAAAGAGTCACGCGATCT
TCCCCCTCCAAAACCAATAATCCGGAGATACTTACACCTCTGTTTCTCTAGAGACATTTA
GTATTCCAAACAATTTATTTCGTTTGAAGCACCTACACTCACATAAACATAATTCCCCAA
ACTCAAGTTTCCTCCTACACACAATATGGTGGCATCTGAGTCTGCGCAGTACGAGCCGAG
CCGGCCGACTCCTTCCTGGCAGGCCAATAGTCCCGCCTTCCGGCGCGAAA
GGCTGTACCATTCCCACACCGAGGCTTTGCGTCCCTCGCAGTTCACAGGAACGGATTTCCGAGCCAGCATGTTCTCGTTTCACCGGCAAGACTGATCTTAGCCGAGCCGAGCCGAACCAACGCTAAGGAAGTGTTTTCTATGTCGCTGCGCCGCCGCCGCGCCCCAGCGCGCGAATGGTCTGGACCAACGTCACCTCCGGTCTCAAGTGTCATGGCTGCCTTGAGAGTCTA
GTGAGTGTGCACCCTGGTGGGGAAG..........ATCACAGTGTAATTTTGTTTTATAG
TCACCACTACTTTAAATACTGCAAAATCTCAGCATTGGCTCTACTGAAAATGGTGATGCATGCCAGGTCAGGAGGCAACTTGGAAGTGATGGGTTTGATGCTCGGGAAAGTCGACGGCGAGACCATGATCATCATGGACAGTTTCGCTTTGCCTGTAGAGGGCACAGAAACTCGAGTAAATGCTCAAGCTGCTGCGTATGAGTATATGGCTGCATACATAGAAAATGCCAAACAG
GTAAAAATATTGTTTCTTAAATTTA..........AAGCATTTTTTCTTTGATGTGTTAG
GTTGGCCGCCTTGAGAATGCAATCGGTTGGTATCATAGCCACCCTGGTTATGGCTGCTGGCTCTCCGGGATTGATGTTAGTACACAGATGCTGAACCAGCAGTTTCAAGAACCATTTGTAGCAGTGGTG
GTAAGTACTAACTGGAGGTTTAGTA..........TATGTTGGCCATCTGTCTCTTGTAG
ATTGATCCAACCAGAACAATCTCTGCAGGAAAAGTGAATCTTGGCGCCTTTAGGACATATCCAAAG
GTAATTTGGATGGAGGGAGGGGCTA..........TTCCGTTTCCTTTGTTTTGGTTTAG
GGCTACAAACCTCCTGATGAAGGACCTTCTGAGTACCAGACTATCCCACTTAATAAAATAGAAGATTTTGGCGTGCACTGCAAACA
GTGAGTAGTTGAACAGTCGTCAGGT..........CCAAATGTGTGCTCTTGTTTTATAG
ATATTATGCCTTAGAAGTCTCATA
TTTCAAATCATCTTTGGATCGTAAACTACTTGAGCTTTTGTGGAATAAATACTGGGTGAA
TACCCTGAGTTCCTCTAGCTTGCTTACTGTAAGTACTGGACTTGTTTCATTTGAATTTTG
TTTTACTCTGAAGCCCAAGTTGACACATGGTTAACTCAAACATATGAAGGCCAAAGGCCA
ACCCAGAAGTGTCAGTTCTCTTCTTGTATGTAGGCCCGTGATCAAACTCAGGTTGTCAGG
CTTCGCAGCAAGCTCCTTCACACACTGAGCCATCTTACTGGCCCATGACTTCAGGGCCTT
GAGTGTTGGGATCACAGGCAAGTGCTATTATACCTGATTAATTTCACTTGTAGCCAAGCT
ACAAAAACTGTTTGTTATTTGAAACTTCATTTCACAGAATGGCATAATCTCAAGGCTGGA
GCAGGGTTCTGTCCCGAGCTAGATGAGGATGCTAGGCAATCCAAATGGGGGAAGATATGC
TTGTGCCTTAAAGAGGTTCATAGAGGAAGAAACAAAAATACTGTTTTTGTTGCCTCAGGT
AACAGGTAGGTCTCTGACACATAATATGCGACCCTCACAGGAATCACATTTCAGATATTT
AAATTACAATTCATAACAATAGCAAAATTACAGTTATGAATTAGCAGCTATGTAATTCAT
GAGTGGAAGTTACCCCAACATGAAGACCTGTATTAAAGGCTCACAGTATCAGTAGAAAGA
GGTCCTGAAAGAAATCTGAAGATCATTACAAATCCCAGACAAAGAAAAACATTAACTCAA
TAGCTCCCAATACATCATTAAAATCTAATATTGTGATTCTTCCTATTATTAATGGATATA
TATTTAATAGTTATACATTTAGAACTTAGCAGTTTTATTGTTTTTACTTTCTGATAAAAA
AAAAAGTCTACTTCATGTAACACAGTATAATTCAAAAGAAACGGGGTTTGAAAACAAATC
TGAGACTACTACTAGTCCTTGGTGACCTTCAGAGCATAGT..........

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........GATACAGACGGGCAGTAGTGGTGCACGCCTTGAATCCCAGCACTCAAGCA GGCAGCTCTCGAGTTTGAGGCCAGCCTGGACTACATAGTTCCAGAACTGCAAAAACCCCG GGGTCCAGGTGAAGCAGCTACAGAGCCTTCTAATTCCTGTGAAGGGGCAGTTATTGACGA AGAGTTAAGGAAAGGCATCTCCGAGCTGTGCTTTTTAAAATCTGGGTGCTCTAAAGCAGA AATGTCAAGAAGTGCATTTCAAGCAATGCCTAAAAACTAATATATTACTAAGCCAAGGAA AAAAGTTCTAATAGAATGAAAAACTGGGTTGGGGGAGCTAAAAGAAGATGATGAAGCTGG AGAAGTCTTTAAGAACCGTGTTACGAAAAAAATTAAATATATTAGAATTAAATAAAACAC AAATTTCATGCATGCCTTCAACTTACAGTCTAGTGGGCAATTGGGGATGAGAATGTGAGG GAAGAAAACCTAAAAATACGACTGAAACAAATTTCACATTAACTGCTGGAAGGCACAGGT TGCGGAGATTAAATCTGCACTGAGACAAACCTTTTTTAAAAAGTAGCGCCTAAGGCATTC ACGGCTCCTAACACTTGTATAAAATGTTACCCTATAAAGTCCTCAAAAAAGTTAATCTTA GCAACCGGTGACTTTTGCTTGCCACCTCGCAACAGTAGCGAAAACACAAAAGCGGAACGC CAACCACAAACCCCGGAGGCTTAACACACCGCAAATTATCTTAAAAGAGTCACGCGATCT TCCCCCTCCAAAACCAATAATCCGGAGATACTTACACCTCTGTTTCTCTAGAGACATTTA GTATTCCAAACAATTTATTTCGTTTGAAGCACCTACACTCACATAAACATAATTCCCCAA ACTCAAGTTTCCTCCTACACACAATATGGTGGCATCTGAGTCTGCGCAGTACGAGCCGAG CCGGCCGACTCCTTCCTGGCAGGCCAATAGTCCCGCCTTCCGGCGCGAAA
1	EXON 1	10,037,919	10,038,149	-	2	231	GGCTGTACCATTCCCACACCGAGGCTTTGCGTCCCTCGCAGTTCACAGGAACGGATTTCC GAGCCAGCATGTTCTCGTTTCACCGGCAAGACTGATCTTAGCCGAGCCGAGCCGAACCAA CGCTAAGGAAGTGTTTTCTATGTCGCTGCGCCGCCGCCGCGCCCCAGCGCGCGAATGGTC TGGACCAACGTCACCTCCGGTCTCAAGTGTCATGGCTGCCTTGAGAGTCTA
	INTRON 1 - 2	10,035,164	10,037,918			2,755	GTGAGTGTGCACCCTGGTGGGGAAG..........ATCACAGTGTAATTTTGTTTTATAG
2	EXON 2	10,034,929	10,035,163	2	0	235	TCACCACTACTTTAAATACTGCAAAATCTCAGCATTGGCTCTACTGAAAATGGTGATGCA TGCCAGGTCAGGAGGCAACTTGGAAGTGATGGGTTTGATGCTCGGGAAAGTCGACGGCGA GACCATGATCATCATGGACAGTTTCGCTTTGCCTGTAGAGGGCACAGAAACTCGAGTAAA TGCTCAAGCTGCTGCGTATGAGTATATGGCTGCATACATAGAAAATGCCAAACAG
	INTRON 2 - 3	10,034,137	10,034,928			792	GTAAAAATATTGTTTCTTAAATTTA..........AAGCATTTTTTCTTTGATGTGTTAG
3	EXON 3	10,034,008	10,034,136	0	0	129	GTTGGCCGCCTTGAGAATGCAATCGGTTGGTATCATAGCCACCCTGGTTATGGCTGCTGG CTCTCCGGGATTGATGTTAGTACACAGATGCTGAACCAGCAGTTTCAAGAACCATTTGTA GCAGTGGTG
	INTRON 3 - 4	10,033,324	10,034,007			684	GTAAGTACTAACTGGAGGTTTAGTA..........TATGTTGGCCATCTGTCTCTTGTAG
4	EXON 4	10,033,258	10,033,323	0	0	66	ATTGATCCAACCAGAACAATCTCTGCAGGAAAAGTGAATCTTGGCGCCTTTAGGACATAT CCAAAG
	INTRON 4 - 5	10,032,425	10,033,257			833	GTAATTTGGATGGAGGGAGGGGCTA..........TTCCGTTTCCTTTGTTTTGGTTTAG
5	EXON 5	10,032,339	10,032,424	0	2	86	GGCTACAAACCTCCTGATGAAGGACCTTCTGAGTACCAGACTATCCCACTTAATAAAATA GAAGATTTTGGCGTGCACTGCAAACA
	INTRON 5 - 6	10,030,711	10,032,338			1,628	GTGAGTAGTTGAACAGTCGTCAGGT..........CCAAATGTGTGCTCTTGTTTTATAG
6	EXON 6	10,030,687	10,030,710	2	-	24	ATATTATGCCTTAGAAGTCTCATA
	3' upstream sequence						TTTCAAATCATCTTTGGATCGTAAACTACTTGAGCTTTTGTGGAATAAATACTGGGTGAA TACCCTGAGTTCCTCTAGCTTGCTTACTGTAAGTACTGGACTTGTTTCATTTGAATTTTG TTTTACTCTGAAGCCCAAGTTGACACATGGTTAACTCAAACATATGAAGGCCAAAGGCCA ACCCAGAAGTGTCAGTTCTCTTCTTGTATGTAGGCCCGTGATCAAACTCAGGTTGTCAGG CTTCGCAGCAAGCTCCTTCACACACTGAGCCATCTTACTGGCCCATGACTTCAGGGCCTT GAGTGTTGGGATCACAGGCAAGTGCTATTATACCTGATTAATTTCACTTGTAGCCAAGCT ACAAAAACTGTTTGTTATTTGAAACTTCATTTCACAGAATGGCATAATCTCAAGGCTGGA GCAGGGTTCTGTCCCGAGCTAGATGAGGATGCTAGGCAATCCAAATGGGGGAAGATATGC TTGTGCCTTAAAGAGGTTCATAGAGGAAGAAACAAAAATACTGTTTTTGTTGCCTCAGGT AACAGGTAGGTCTCTGACACATAATATGCGACCCTCACAGGAATCACATTTCAGATATTT AAATTACAATTCATAACAATAGCAAAATTACAGTTATGAATTAGCAGCTATGTAATTCAT GAGTGGAAGTTACCCCAACATGAAGACCTGTATTAAAGGCTCACAGTATCAGTAGAAAGA GGTCCTGAAAGAAATCTGAAGATCATTACAAATCCCAGACAAAGAAAAACATTAACTCAA TAGCTCCCAATACATCATTAAAATCTAATATTGTGATTCTTCCTATTATTAATGGATATA TATTTAATAGTTATACATTTAGAACTTAGCAGTTTTATTGTTTTTACTTTCTGATAAAAA AAAAAGTCTACTTCATGTAACACAGTATAATTCAAAAGAAACGGGGTTTGAAAACAAATC TGAGACTACTACTAGTCCTTGGTGACCTTCAGAGCATAGT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Cops5 (ENSMUSG00000025917)
Transcript ID	ENSMUST00000188619

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 210 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information