MoG+ -Mouse Genome database with high added value-

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BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Stat1 (ENSMUSG00000026104)

Cross Reference

GO	GO:0000790, GO:0000978, GO:0000979, ...show all
goslim_goa	GO:0000228, GO:0001071, GO:0002376, ...show all
MGI_trans_name	Stat1-015
OTTP	OTTMUSP00000066952
OTTT	OTTMUST00000121567
UniParc	UPI0004621122
Uniprot/SPTREMBL	A0A087WRI1
Vega_transcript	OTTMUST00000121567, Stat1-015
Vega_translation	179241, OTTMUSP00000066952

Definition

codon_start:3
protein_id:ENSMUSP00000140643
translation:

XKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEPYTKKELSAV
TFPDIIRNYKVMAAENIPENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDDPKRTGYI
KTELISVSEVR

Chromosome

1

Length
Position(start - end)

3,264
52,152,253 - 52,155,518

Orient to Chromosome

plus

Link

Location : (1:52152253-52155518)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Stat1 (ENSMUSG00000026104)
Transcript ID	ENSMUST00000189336

Reports
substitution
cSNPs	3
Insertion	12
Deletion	7
SNPs	-1kb 52147359(c.-4896C>T), 52147511(c.-4744A>T), 52147516(c.-4739C>T), 52147589(c.-4666G>A), 52147757(c.-4498G>A), 52148421(c.-3834G>A), 52148510(c.-3745C>T), 52148511(c.-3744A>G), 52148821(c.-3434A>G), 52148822(c.-3433C>G), 52149249(c.-3006A>G), 52149291(c.-2964A>C), 52149371(c.-2884A>G), 52149439(c.-2816C>T), 52149478(c.-2777G>A), 52149496(c.-2759A>G), 52149541(c.-2714C>G), 52149700(c.-2555A>G), 52149723(c.-2532T>C), 52149772(c.-2483T>C), 52149814(c.-2441C>T), 52149847(c.-2408A>G), 52149885(c.-2370G>T), 52149886(c.-2369T>C), 52150205(c.-2050C>G), 52150280(c.-1975A>G), 52150290(c.-1965G>A), 52150441(c.-1814T>C), 52150446(c.-1809C>T), 52150469(c.-1786C>T), 52150481(c.-1774C>G), 52150533(c.-1722C>T), 52150917(c.-1338A>G), 52150948(c.-1307T>C), 52150960(c.-1295C>G), 52150972(c.-1283A>C), 52151144(c.-1111A>G), 52151197(c.-1058C>A), 52151414(c.-841G>A), 52151691(c.-564C>T), 52151722(c.-533A>G), 52151837(c.-418G>T), 52151891(c.-364G>A), 52151902(c.-353G>C), 52151903(c.-352C>A), 52151980(c.-275A>G), 52152012(c.-243A>G), 52152025(c.-230G>T), 52152026(c.-229T>G), 52152030(c.-225T>C), 52152079(c.-176C>T), 5'UTR CDS 52152311(c.57A>G), 52153860(c.141C>T), 52153884(c.165A>G), 3'UTR 52156064(c.195C>T), 52159415(c.346G>A), 52159417(c.348A>G), INTRON 52152447(c.124+69G>A), 52152751(c.124+373A>G), 52152765(c.124+387G>T), 52152771(c.124+393A>G), 52152922(c.124+544T>A), 52152994(c.124+616A>G), 52153110(c.124+732T>A), 52153120(c.125-724G>A), 52153208(c.125-636A>T), 52153255(c.125-589G>A), 52153324(c.125-520G>A), 52153816(c.125-28C>T), 52154392(c.310+363C>G), 52154587(c.311-399A>G), 52154624(c.311-362T>C), 52154627(c.311-359A>T), 52154636(c.311-350A>G), 52154678(c.311-308C>T), 52154739(c.311-247A>G), 52154844(c.311-142C>A), 52154933(c.311-53G>A), 52154937(c.311-49C>A), 52155366(c.387-146G>A), 52155498(c.387-14A>G), 52155869(c.114-114T>C), 52155933(c.114-50G>A), 52156092(c.213+10A>G), 52156267(c.213+185G>C), 52156345(c.213+263G>A), 52156462(c.213+380G>A), 52156627(c.213+545C>G), 52156638(c.213+556T>C), 52156701(c.213+619A>T), 52156757(c.213+675T>C), 52156807(c.213+725G>T), 52156850(c.213+768A>G), 52156936(c.213+854G>A), 52157046(c.213+964C>A), 52157062(c.213+980C>T), 52157139(c.213+1057T>A), 52157305(c.213+1223G>A), 52157855(c.214-1428T>G), 52157860(c.214-1423T>A), 52158057(c.214-1226G>C), 52158598(c.214-685T>C), 52158662(c.214-621C>T), 52158781(c.214-502C>T), 52159116(c.214-167T>C), +1kb 52159667(c.4149T>C), 52160081(c.4563A>G), 52160125(c.4607A>C), 52160350(c.4832T>C), 52160355(c.4837A>G), 52160563(c.5045C>A), 52160587(c.5069T>C), 52161042(c.5524G>A), 52161146(c.5628C>T), 52161269(c.5751A>T), 52161316(c.5798G>A), 52161341(c.5823C>A), 52161487(c.5969A>G), 52161597(c.6079G>C), 52161627(c.6109A>G), 52162493(c.6975T>C), 52162597(c.7079A>G), 52162698(c.7180C>T), 52162760(c.7242C>T), 52163037(c.7519C>T), 52163104(c.7586C>T), 52163105(c.7587G>A), 52163384(c.7866G>A), 52163841(c.8323A>G), 52163870(c.8352C>G), 52163925(c.8407G>A), 52163954(c.8436A>G), 52164021(c.8503C>T), 52164184(c.8666G>A), 52164248(c.8730A>G), 52164329(c.8811G>A), 52164429(c.8911T>G), 52164433(c.8915G>A), 52164437(c.8919G>A), 52164463(c.8945A>G), 52164464(c.8946G>T), 52164481(c.8963G>A), 52164484(c.*8966A>G),
Insertions	-1kb 52148558 (c.-3697_-3696insTCCC), 52148592 (c.-3663_-3662insC), 52148596 (c.-3659dupC), 52149431 (c.-2824_-2823insG), 52149527 (c.-2728_-2727insGG), 52149747 (c.-2509_-2508dupTT), 52150189 (c.-2066_-2065insTG), 52150382 (c.-1873_-1872insGA), 52151793 (c.-462dupA), 52151808 (c.-447_-446insAAGA), 5'UTR CDS 3'UTR INTRON 52153565 (c.125-279_125-278insAC), 52157116 (c.213+1036_213+1037dupGT), +1kb
Deletions	-1kb 52149714 (c.-2540_-2539delTT), 52150389 (c.-1865delG), 52150393 (c.-1861_-1860delGT), 5'UTR CDS 3'UTR 52159386 (c.326_329delAAGA), INTRON 52152495 (c.124+118_124+119delTG), 52156420 (c.213+339delA), +1kb 52160070 (c.4553delT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	3
non-synonymous num	0
synonymous substitutions	52152311 (p.Arg19Arg), 52153860 (p.Ala47Ala), 52153884 (p.Glu55Glu),
non-synonymous substitutions
B6 transcript (ENSMUST00000189336)	KERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEPYTKKELSAVT FPDIIRNYKVMAAENIPENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDDPKRTGYIK TELISVSEVR*
MSMv4 transcript	KERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEPYTKKELSAVT FPDIIRNYKVMAAENIPENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDDPKRTGYIK TELISVSEVR*
homology	100.00 (131 / 131)

Exon Detail Report

Gene Symbol (Gene ID)	Stat1 (ENSMUSG00000026104)
Transcript ID	ENSMUST00000189336


..........AAAAATTTCTCCTTCTGGCCTTGGATTGACACCATCCTAGAGCTCATTAA
GAAGCACCTGCTGTGCCTCTGGAATGATGGGTAAGCGTCCCTGAGCGCTCCGAAGGCTGG
GACAGAGTGCCGGCCGGCCTTCAGGATTTGGCAGGGGTTTTGCTCAGAGATACACACTTA
CCTGGTATAAGGCTCCTTGAAAGGACACCCTCAGGAGATTAAGCATGTCTTAGGATATCT
ATATTTAGATCTATCTATTTAAAAGCTAAATTAAAAACAAAAACCTCTTAGTGTCATTAA
TGTATTTATTCATTCTCACAAACATTGTCAGTATTTACTGTACTGCCCTAATAAAGAATC
AGAAACCACCAGATGGGGCAGTGCAGATCTTTAACTTCAGCTGAGGCTGAGGCTGAGGCA
GGCTGATCTCTGCTCGTAGCACAGCAAGTTCCAGGCAGCCACGGCTGACAGTGAGACTCG
GTCTTTTTTGTTAAAAGGAAGGAAGGAAGGAGAGAAGGAGAGGGAAGGGAAGAGAAGGGA
AGAAGGAAGGAGACAGAAGGAAAGAGAGAAAGAGAAAAGTGTTTAGCTCATTCATTCCAG
GGATCAACTGATATCTCCGGGGTTCCTGTCAGTTGACCAGCAGTGATGATGTCTGAAGCC
ATGTTACCTGAGGCTGCGTCCCCAGTACAAGATGCATAGGCAGACACTGTCATGCGTGGT
GTTTAAAGTCAGCAAGTGACAGCAGACGACGACGCATTGCCTGTTTACCGAGCCACACCC
CATGCGGCGTTCATCCTGATTCCTACTTAGCACATGTATCTATAAGTGAGATGCTCTCTT
TAAGTGCCAGTTAAGCATTTTGAAAGCATACATTTTCATAGTATGTTCTCTTGTCAGGCG
GCAGCAGGTTTCTTAGACTGTAAGTCAAAATGGAAAATTAAATTCACGAGGGAAACACAA
AGCGTCTCCATTCATCTCTTTAATACCCAGGTGCATTATGGGCTTCATCA
GCAAGGAGCGAGAACGCGCTCTGCTCAAGGACCAGCAGCCAGGGACGTTCCTGCTTAGGTTCAGTGAGAGCTCCCGGGAAGGGGCCATCACATTCACATGGGTGGAACGGTCCCAGAACGGAGGTG
GTGAGTGAAGGGTCTCCCTCATGCC..........GACCTCACTGGTTTCCTCCTTGTAG
AACCTGACTTCCATGCTGTGGAGCCCTACACGAAAAAAGAGCTTTCAGCTGTTACTTTCCCAGATATTATTCGCAACTACAAAGTCATGGCTGCCGAGAACATACCAGAGAATCCCCTGAAGTATCTGTACCCCAATATTGACAAAGACCACGCCTTTGGGAAGTATTATTCCAGACCAAAGGAAG
GTGAGTGCCTGAGCGATCTGGGGTG..........GTGTACACGGTGTGCTTGCTCGTAG
CACCAGAACCGATGGAGCTTGACGACCCTAAGCGAACTGGATACATCAAGACTGAGTTGATTTCTGTGTCTGAAGT
GTAAGTGAGCACAGAAGACTGGCTT..........TTGATTCTGTCGTTTCATTCCGTAG
AAGGTAGAAAGTGCTGGAAAAGTCATTGTCAGTTATTTGCTTGCGGCACTGTCTGGGGGTGAATGGATGTAGCCTTCATGTAGAACCCTGTGGAGCAGCCTTATCTGCATAGACCTCAAG
GTAGGGAGGAGGGATCCCCAGACAT..........CTGTCCTTTCCCCTCTCTGTTCCAG
CCACCCTTCTAGACTTCAGACCACAGACAACCTGCTTCCCATGTCTCCAGAGGAGTTTGATGAGATGTCCCGGATAGTGGGTCCCGAATTTGACAGTATG
GTGAGTACTGTGGCAGGGGTATTTC..........CCTACCTACATTCTGTCTCTTGCAG
ATGAGCACAGTATAAACACGAATTTCTCTCTGGCGACATTTTTTTCCCATCTGTGATTCCTTCCTGCTACTGTTCCTTCATATGCAGTATTTCTAGGGAAATGCAAGAAAGAAAGAGCATCACATTTGCTGAACGCTGCTGGTAGAAAGTGGATATTTCTCTAATTAGAAACCTGTTACTCTGAAGGACTTCATGCATCTTACTGAAGGTGAAATGGAAAGTCACTTAACACAAAATGGATTTTGTAAACAAAGACCAAGAGATCCACCCAAGCACCA
GGACTAGAGTGCGAGTATTTGGGGCAAGGTGAGGAGAACGGTCACTTTAGTAATGGTCTG
TAATCAGTGCCCAAGTGCTGCACATCACTGGAAAGAGACATACTTACGGGGGAGGGGCCT
TCTTGATGGAGGAATGTTTCTGTCCCGGGAGACATTGGCACTTCCCCTCTCCTGGATGGC
CGGAAGTCTTCCACTGTTTTACATATGGCACAGTTCAAAGTCAACTTTAGATCCAATGCT
CTATCAAACTATAGTGGGCATCCTTCATGTGAGTGGGAAGAAAACAACCGTGCTCCTTAC
TGCAGCTTCTGCCAAGGCATGGTTGCTCTCCTCAGGGACTAGCTTTGTTGGTGGCAATGG
CTACACAAAACTAAACACCAACAGAAGTAAGACCATTTTCATGAGTACTCCATCAAGTTA
AAGGGTTTTTGTTGTCTTTTTGGTCATGGATTGAATAAAATTGTCTTTGCACATCCATTA
AGGGGGCCAGCTTTCTTAAAGCAATTTTTCTTTTTTTTTAACTAAAATTAGATATAGGTG
AACTCATGTTTTTTAGTGGGCTGACCTTATCGGTTTTAGCTGGTTGTCTTAATTAGCCAT
AAACTTGGAGAAAGCAGTGACTTCTTGAATCCTTAGCCAAATATGAGTATCAGATAATTT
TATTATTTTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTATTCTGGAACTCACT
CTGTAGATCAGGCTGGCCTGGAACTCAGAAATCCGCCTGTCTCTGCCTCCCGAGTGCTGG
GATTAAAGGCGTGCGCCACCAATGCCTGGTGAGATAACTTTAAAGAACTCCCTATAAATG
CATGAGAACCACTGTTACTGATGAATGTGGTTTTTTGACAACTACATTCACAAATGGCCT
GTCTTGTGTTTTGTCACCGTTTTGAGGGATGATGTTTTGTGGCACGTGTGTGATCACAGC
CTGATGGTTCTGGTCGTGGGTTGGTTCTTCTGGGCCAGCT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Stat1 (ENSMUSG00000026104)
Transcript ID	ENSMUST00000189336

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 131 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
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