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Target CDS Information

Gene Symbol (Gene ID) Tmem131 (ENSMUSG00000026116)
Cross Reference
EMBL AC084389, AC123854
GO GO:0002682, GO:0003674, GO:0005575, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0008150
MGI_trans_name Tmem131-004
OTTP OTTMUSP00000068274
OTTT OTTMUST00000126155
UniParc UPI0004620F0E
Uniprot/SPTREMBL A0A087WRG7
Vega_transcript OTTMUST00000126155, Tmem131-004
Vega_translation 179001, OTTMUSP00000068274
Definition protein_id:ENSMUSP00000140620
translation:
QPGVAMQEDLWDADWDAHQSLFKAWMGIKENAGHRLNAMFEVNTDLQKNIVSKVSAELSW
PSVLSSPRLLKFPLTNTNCSSEEEISLENPADVPVYVQFIPLALYSNPSVFADKLVSRFN
LSKVAKLDLRTLEFQVYRNSGKYRSQ

Chromosome 1
Length
Position(start - end)
4,363
36,814,397 - 36,818,761
Orient to Chromosome minus
Link Location : (1:36814397-36818761)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tmem131 (ENSMUSG00000026116)
Transcript ID ENSMUST00000189470
Reports
substitution
cSNPs1
Insertion7
Deletion5
SNPs
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Insertions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
Deletions
+1kb
5'UTR
CDS
3'UTR
INTRON
-1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num1
non-synonymous num0
synonymous substitutions 36815897 (p.Leu115Leu),
non-synonymous substitutions
B6 transcript
(ENSMUST00000189470)
QPGVAMQEDLWDADWDAHQSLFKAWMGIKENAGHRLNAMFEVNTDLQKNIVSKVSAELSW
PSVLSSPRLLKFPLTNTNCSSEEEISLENPADVPVYVQFIPLALYSNPSVFADKLVSRFN
LSKVAKLDLRTLEFQVYRNSGKYRSQ*
MSMv4 transcript
QPGVAMQEDLWDADWDAHQSLFKAWMGIKENAGHRLNAMFEVNTDLQKNIVSKVSAELSW
PSVLSSPRLLKFPLTNTNCSSEEEISLENPADVPVYVQFIPLALYSNPSVFADKLVSRFN
LSKVAKLDLRTLEFQVYRNSGKYRSQ*
homology100.00 (147 / 147)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Tmem131 (ENSMUSG00000026116)
Transcript ID ENSMUST00000189470
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........AGAGGGCATCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGC
TGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATC
TCACCAGCCCGATAGCCTACATTTTTAAAGAGATTTAATTTTCTCTTGGATGGCAAAAAT
TACTGTTGTATTTCTAAGGAAAACATTTTCTTTTAAAGAATGTGTTTCGGCCTTCCTTGG
TTAGATTTTAGAATTCATTTATTTTGGGGCAGCCTTGCCTTGGTGTTAGCAGACTTTACA
TTACAAACAAAGCGACCCTCTAAAGCCCCCTCTGCGCCTTCCTGGGTACTTAGTATGTCA
ACACAAGTTAAATTCCCATTAGTTTATAACAGTACTTCTGTAACATGCACGATGGCACCA
GTGAAAAAGCTGGCCTGTGATCTCAGGTCTTCAGATTTGCTGGTTCTCATTTGAATGAGG
GCATGGATTTTCGTATCAGTTATAATTTTAAAAGGTCGATTGATGAAAATTCTGAACTTG
TGTTTTCTTCTTTCAGGGGAAAATAGTTCATCAGAGCTTAAATATTATGAATTCCTTCTC
ACAGAAGGTGAAGATACAGCAAATAAGGTCTTTGTCAGAAGACGTACGATTCTACTACAA
ACGATTACGGGGTAATAGGGAAGACTTGGAGCCAGGGAAGAAGTCTAAGGTTTGTTAGAA
ATGAGAATTTCCAGCTGTCATCACTCTGTGGCTGGCCGTCTGTCTGTTCTCGGCACTCAT
GGTCGTCCTGTGTTCCTTTACAGATTGCAAACATTTATTTTGACCCTGGGCTGCAGTGTG
GGGATCACTGCTATATCGGCTTGCCTTTCCTATCCAAATGTAAGTCTTCCATCCCGCCTT
CCTTTACTCTCCTGCCTCGGTACCGTAGGACTCACTGGAAGGGGTACTGGCAGTGGCTTA
GGCTGAGTGCATGCTGACTTGTGCTTCCTCTTTTAGCTGAACCCAAAGTA
1 EXON 1 36,818,658 36,818,761 - 2 104
CAGCCTGGGGTGGCCATGCAGGAGGACTTGTGGGATGCCGACTGGGACGCACATCAGAGC
TTGTTCAAGGCTTGGATGGGGATAAAGGAAAACGCAGGACATAG
INTRON 1 - 2 36,816,248 36,818,657 2,410
GTATGAGCTTCTGCTTCATTCAGGA..........ACTGACATAGAAATTGCTTTTCTAG
2 EXON 2 36,816,109 36,816,247 2 0 139
GTTGAATGCTATGTTTGAAGTAAATACAGATCTTCAGAAAAATATCGTATCAAAAGTCAG
TGCCGAGCTCTCCTGGCCGTCTGTCCTTAGCTCGCCCCGGCTCCTGAAGTTCCCACTCAC
TAACACAAACTGTTCTTCG
INTRON 2 - 3 36,815,997 36,816,108 112
GTAAGTGTTCAAATGGCCTAAACAG..........TAATGCATCTGGGCTTTGCTTTAAG
3 EXON 3 36,815,887 36,815,996 0 2 110
GAAGAAGAGATTAGCTTAGAAAACCCTGCAGACGTCCCTGTCTACGTCCAGTTCATCCCA
CTGGCTTTGTATTCCAACCCCTCCGTCTTTGCAGATAAGCTAGTCTCAAG
INTRON 3 - 4 36,815,522 36,815,886 365
GTAAGCACTCCTTAGCTGGTCAAAG..........AAGATAAACGTGTTTTTTATTTTAG
4 EXON 4 36,815,455 36,815,521 2 0 67
GTTTAACTTGAGTAAGGTGGCCAAGCTAGATTTGAGAACACTTGAATTCCAAGTCTACAG
GAACAGC
INTRON 4 - 5 36,814,418 36,815,454 1,037
GTAAGTACAACAATCATTTACTCTG..........AACTTGGTTTCTTCTGCCTTGATAG
5 EXON 5 36,814,142 36,814,417 0 - 276
GGAAAATACAGAAGTCAATGAGCTGATGATCTCATGCAGTCGCATTTGCAAGACATAGGA
CCCTGACCTAGACTCTAAAGGACAGATGGATGAGGAAAACCTCTGGACCTCAGGAGGTTT
CCACAGAAGAAATTCTCAGTGTGAAACTCTAATTGCTGAGAGTCCTTTAAACATGCTTCC
TTTTCTGTCATATCCAGTTCTATCCAGTTCTATCCAGTTCTAGAGAGTCATGAATTCATG
TTGAAATTGAATAAATTTTGTTTGCTACTGTTCAAA
3' upstream sequence
GACATTTTCTTTTCATTATAAATGCAGACTGGGGAGCAAACAGTGGCTACAAGGGAGGTT
TAGCACCGTGTCTCGGTTCACACCTAACAGCTGTGATCGGTAGTACAAACAGCATCCTAA
GAAAAGCAGATGTGTCTGTCTGTATTACTACAGAGGGGTTTCTGAGGCTACCCACGGGTC
CCCTGCTCAGTCTGTCTGACCCTTAAGAGCTTACCACGGCACAAGTATGGAGCCCGTTAG
TGCTGTGTCGGGGCACCATACTATCCCGACATGCTTCTCAGACCATCAGAGGTTAAATGA
GTTAGTATTTTGGAATACATACAGTCTTTCATTGTGCTCATAAGTGGGGCCAGCATGATG
ACAAACAGACTTAATCCCAGCACTCAGGAGGCAGAGGCAGATGGATTTCAGTGAGTGTGG
TGCCTGCCAAAGCTACATACATAGTGAGAGAGAAAGGGAGTGGAGGCGATTGCCAAGAAT
AGTTTATTAAAAGGAGCTTTCTCAGCGGGCGTTTCAGAACAGTCAGAGTATTCTGTTATC
CTGGTAGACTGTTGATAAAGAACAGTGCTATCTGTAAAGGGAGACCTTTTACTTCATAAG
CAGGACTTACGTAGTGCACGTCATCAGTCCACATGGTGTGGTATGTTTGTCAGTTCACAA
TAACACAGCAGAACCCAGCCATGCCAAGAGAAGTAGAGAATGGCACACAACTCACCCTTC
CCCAGAATATTTAGTCTTCTTTAAAAAAACACAAGAGTGTGTCTTTGTGTTGAAACAGTG
TTTTTTAACATAAAAACAAAACGACTCTGAACCATTTTAAAACTGGTCATAACGTCTTAT
TTTAAATTTCAGATTGGGTTATATCTTAAATCAAGTCTCTACAAAGCAATAAATAGGTAC
TTAGTTTTCAAAATGGGATTAAAGATTATTAGTCAGGTCATGTATAACTCAACAGCACAC
ATTGACTTGGGGTGGGGGGGGGGGCGGCGGGGGGAGTTCT..........

Sequence Detail Report

Gene Symbol (Gene ID) Tmem131 (ENSMUSG00000026116)
Transcript ID ENSMUST00000189470
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 147 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information