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Target CDS Information

Gene Symbol (Gene ID) Khdrbs2 (ENSMUSG00000026058)
Cross Reference
EMBL AC117186, AC122027, AC124771, ...show all
GO GO:0005070, GO:0005634, GO:0008143, ...show all
goslim_goa GO:0003674, GO:0003723, GO:0005575, ...show all
MGI_trans_name Khdrbs2-002
OTTP OTTMUSP00000067897
OTTT OTTMUST00000125037
UCSC uc007ann.1
UniParc UPI00001ECFA0
Uniprot/SPTREMBL A0A087WSL3
Vega_transcript Khdrbs2-002, OTTMUST00000125037
Vega_translation 178880, OTTMUSP00000067897
Definition protein_id:ENSMUSP00000141095
translation:
MGEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
SERVLIPVKQYPKVLHACSMYFFVLSVLEQK

Chromosome 1
Length
Position(start - end)
71,165
32,172,918 - 32,244,084
Orient to Chromosome plus
Link Location : (1:32172918-32244084)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Khdrbs2 (ENSMUSG00000026058)
Transcript ID ENSMUST00000189878
Reports
substitution
cSNPs0
Insertion65
Deletion79
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num0
non-synonymous num0
synonymous substitutions
non-synonymous substitutions
B6 transcript
(ENSMUST00000189878)
MGEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
SERVLIPVKQYPKVLHACSMYFFVLSVLEQK*
MSMv4 transcript
MGEEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKL
SERVLIPVKQYPKVLHACSMYFFVLSVLEQK*
homology100.00 (92 / 92)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Khdrbs2 (ENSMUSG00000026058)
Transcript ID ENSMUST00000189878
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GTCATACAAAAATCAATATAACATCCTAATTTCACCTAAAATAAATACTT
AGGTAACACTGTGGACAGAATAAGAGAAATTAGGAAACTCCCAGCAGGTTTTATATACTG
GGAAAGTTGTCCCAGGTGAATGGGTGGTAGAAATATTGACAAGGGATTGCTTGGGAAAAG
ATAATTTTAAAGAAAGAATCATTTCATTTTAAGTAGACAAGGTACAGCACAGGGGTCCCA
TCTGGAAGGGAAGGGTACCTCCCTTATCCCTCCTTCCTTGGCGATGATTCTTGTGGGTAA
AATACTCATTTAAATAAAGGTGGGGCATATACAAAGTAGTTCAGCAGCATTCCCATGGCA
GCGAAAGAGACCCTGATGTCTAAAATAGGAGAACATCAGAGCGACAGAAGTTAGGCATCA
TCTAGCTTCTTTCATTCACAATTCTCCCAGCTAAGTTTACACAGTGAGTGAATTTTGCAC
CATAAGAATGGGTGGATCCCTAGAACTAATTCTGTATCACGGGCAAGGTACACTGGAAGC
GTTTTGCTCTACTACAGAATCCAGGCACTTCTTCATTTGTACATTAGTGGACATCCTTCT
GCCCCAAGATATAGGTCATGGGAAACACAGCCCACATTTTGTCTCAGATTTCCAACCTTG
CCCAAGAGTCTGCGATCATCCAGGGGAGAGACACCTGTGCCTTGGAGACCTAGGTGAAGT
GCTCAGCCTCTGTGCTCATGGGGCACACATTCTTGCTCTCTCATCCTCGTGCCTGCCTGG
CAGCCCGCACCCACTCCACAGCACTGGCCAGACCTGAGAACACGGCGGGCTAAGGCGGCC
AGGAGAGTGCGCTTGCACTTCGCACACCCCTCCCCTCCGCAGCAGCCTCCTGCCACTCAG
GCGACTCGACTTGCGGCCCCGCCCAATGATAGTCCATAGTCTCCGCGTGCGCCCCGCCCT
CGGACCCCGCTTCCAATAGGAAGCCGGCGGGGTTGGGCCGCACGGGCATC
1 EXON 1 32,172,729 32,173,008 - 1 280
CTCTCCAGCTGAGGCCGCGGCCGGAGCCTGGCTGGGGCGCGGGAGAGGCAGGTACCAGCG
CGGTCTGCGCAGCCCCAGGCGCTAGAGCTGCGCTCTCCTGTGGAAGAACGGTTCCCGGGG
GAGCCAGGGACCGAGGCGTCGGAGCGGGCGGAAATTGCGCCTGACCGGGCACGGTCCGAA
GTCCGCGCTATGGGAGAAGAGAAATACTTGCCTGAGCTGATGGCAGAGAAGGATAGCCTG
GATCCATCTTTTGTGCACGCGTCGCGCCTTCTGGCGGAAG
INTRON 1 - 2 32,173,009 32,243,899 70,891
GTAGGACCGGCTGGGCTCCTGCCAG..........TTGTGATTATTATTTTTTCTTTCAG
2 EXON 2 32,243,900 32,246,878 1 - 2,979
AAATTGAGAAATTTCAAGGTTCAGATGGGAAAAAGGAAGATGAAGAAAAGAAATATCTCG
ATGTCATCAGCAACAAAAACATAAAGCTCTCTGAAAGAGTATTGATTCCTGTGAAACAGT
ATCCAAAGGTACTGCATGCATGCAGCATGTACTTCTTCGTGCTCAGTGTGTTGGAACAAA
AATGATAAAAGTCTTGGTGTTTTCTTCATTGCCTCTTAGGAGTTCAACATGTAAGGCTTT
GCTATCTGAATCTATGCAAATGCAGAGCAATGATAAGGGCAGGAAAATGGGAAGGACAGT
GAAAGGCATTATGTTCCAGTGAAATCTGCATTTCTAGTGCATTTTTGTTTTGGATATGGA
AAGCATTATTACATGTTTTTATCATGTAGGCACCATGACAGTGACTCACCAATTTGCCCA
ATTATTTACACCACATTATCATGTCTTCTTTTGGGTTCTTCACAGACACAGACACTTAGA
CACAGACACTTAGACACACACACACACACACACACACACACACGCACATGCACACACATT
CTTGTTTTTGTAGAGAACAGAAAGGGTACAACATTAGGTAATCACTGGGCAATTGATATT
ATTTAATTATTATTATCATCAAGAGTACAGTATATTACTGGTTTCATGGTTACTGTTTTG
TCTTCTACAGACAGTTTTAAAACTAATTATGGTATTGTTTCCAGTGTAATACATCTCTAA
CTATGTTTGTACCTACAAGTAATTGATTATAATATAATACAGCATTCATTGATGTGGTTT
CTTGAGCAATATTAATAAATTTCAGTGGATAAAAGGTGTTTCTACTCCTGCAAATAAATG
AAAAATCTAAAAATAGATCAAATAAATCAAGCTGATAATATACTTTATAATGAGTGAATT
GGAAACAAGGACAATGTAATTATCTTAATAAATAAAGATTACAGAAATGAATGCTATAGT
TTTACAATTGCCTCTTACTGTGATAAAATGTAATAAATATAATTAAGTCAAATGCTTTGT
TTACTATCACCTGAAATATGGGAAAAACTATTCTATCCACAAGCCATAAAATTGAGTTGT
CAGATGATATTATTAAGGATCAGGTTCATTTTGATTTTATTTTATTAAACCAAGCCTAAT
CTGTTGTAATAAAGTATAGTCAGTAGAAAGTTTTTGTCATAAATATTATTTGATTTTTGT
GAATATCGACTTGGGCGATCTTATAAAAGTGTATGAAGGGATGTGTTGCATAGCAGTTGA
TTATGATAGTGGTATGGTTGACTTTTAAGGAGGAATTAACCAATTATATTTGTAAGTAGA
TATTTCTTTAATATATAATTAGAAATGCTATTACTGGATGCTGTCTCTTGGTATGACACT
TGTCAGACTGGGTTTCTGAAATTATGACAATTAAATGCTTCTCTGTATCCTCTAGCCAAA
TGTTGTTGGCAACATAGAAGACCTTCAGAGACCTGAAGGCATTTCAAGTATGTGTGTTGT
TAAATGCCAAATGTTAAGAGTCCATAATTGATTCATAATTATAACTATTAAAACAGGAAT
ATCGTACAGCATCAAACTTTTATGTGTTGTATAATTTCCTAATTAATTTGAAGATGTTCA
AACCACAAAATTGGAAATTCTTTTTATTTAGATGTTTTGGAATCAGAATGCTTAAGTTTC
AGCTAATTTGAGATGCCAAAGAATTTGTTATATTTATGCTACAGATCAGAAGAAATTTGT
GATTTTTTTTAAAAAAGATCTTTGTTACTGATGAAGATTTTTAATACATATTTTGTTTCC
TTTTTCAAGCAGTTAAAGTTGTAATTTAGTTGATCATGGTTAAGTGTTTGTTTTACTTCT
CATGTAAAATATGGACAGCTGATGGCTTTCAAATAGCTAATAGTAGTATATAGGATAGTC
TTTTGACAATTTATGCTTCAGAAAAACCTCCCATCTTTTCAATTGCTGAATAGCCTGCCA
ACCATTTTAATATTTCAGTCAATGTCAATTCCATTTATTGATCACACAGATGAGAACTCT
AGAACCCTTTATAGAAGGAAGAAATACTGTCAAAGAGGTTACCTAACTAACTGGTGGTCT
GAATATGCTTAGCTCAGAGAGTGAGTGGCACTATTAGGAAGTGTGACCTTGTTGGAGTAG
GAGTGGCCTTGTTGGAGGAAGTGTATCACTGTGGATGTGAGCTTTCAGAATCTCCTCCTG
GCTCTGTGGAAGCCAGTCTTCTCCAATTTGCCTTAGGAACAAGATGTAGAACTCTCAGCT
CCTCCAGCTCTGTGTCTACCTGGATGCTGCCATGCTTCCTGCCATGGTGATTATGGACTG
AACTTCAGAACCAGTAAGCCAGCCCCAATTAAATTTTGTCCTTTATAAGAGTTGCCTTGG
CCATGGTGTCTCTTCACAGCAATGAAAACCCTACCTAAGACAGAAGTTGGTACCAGGGAC
TGGTGTATTGTTGTGAAAGGCCTGACAATGTTTTTGTTTGGAGGGATGTGCACTTTGTGA
CTTTGGATTTGGGAAGCAGTGGCATTCTTTAAGTGAGGCATGATGAGCCATCCCAGTAGG
AATATGGAAGATATTGGTGCTGAGGGTCATTTGAACTGTGGAGACCTGTCTTAAAAGGTT
TCAAAGGAGAATGTTAGTATGTGGCCTAGAGACTGTTTTTGTGGTAATTTGGTGAAGAAT
ATGGCTGCTCTTTGGCCATGTCTGAAGAATTTGTTAGGCTAAGTCTAAGGTATAGAGAAT
CAGATTAATCTCATTGACCAAAAGAAAAAAGAAAAAAAAAATCCCAGAAAAGTCGAACAT
ATACTTTGTCCAGCTTACCTCTATTAAACATTGTCCTTTATAATAGTTGTCTTAGTCATG
ATGTCACTTCACAGACACTAACCCTGACCTGTTTTGTCACTTGTCAATGGTAACCTGTTT
GGCTTTTATAATGATATAATAAAATCATTTTTCAAAAAC
3' upstream sequence
ATACCTTGTTTCACCATTTTCTCTAATCTTTTGAAAGAGTGCACCACATTTATTACAGAG
TATTGATTCTCTTGGAGTATTTGTTGACACTTGACATAGAATATCAGAAAATTTCCATTT
TGCTTATTGAACCTTAGCTGTGTGAGCACATTCATGAGCTCAGTTAGCATGGTGCGTTGT
GATAACATGAAACACTCAGCAGTGAACTGGATATAGAATTTAATCTTGTATGTTAAAACT
GACTGGCCCTTCATGGCTGGGCTCTCCAGGATGACTTTCTGTATACAAGGCTGTCTAAGA
GTCTCTCTTCTTGATACCTGCTGTTTGTTTGCACCAGTAATTAGTGTGTTGATGACCCTG
TCCTATCAAACAAAGGGCAGTGATGAAGTGTGGAAATTCTTCAGGGAAATGACCTTATCA
TGACATTACTACATGACCTTTTCCACATAGATTTTGTTTCAATTAGTCTCCAACTTCAGG
CTAATTTGCTGACTTAGTTGAATACTACAAGGAATTGAAAGAAGTTTAAGATCTTAAATT
ATAGAAATTATAAGAATGCTGTTGAGGAGTTTTAATGATGACTTATCTAGCCCTAGCCTT
TTCTGTTTATTGATTTAATTTAGGGGAAATAGGCCATAGTATCAAATAATTTTAACATAG
AGTTTTTAATATTTGAGTGAAGATTAATAGAGGAGTAGTTGGTAATCTTGCAAAAAAAAA
TCGTGGTTTTGTTTTTGTTTTTGTTTTCATTCTCCACTAGAATGCATATTGTCTTTATGT
TTCCAATAACACCAGAGAAATTATTTCAAATATAAACAAGATTTCTTTAGGGGCCATCTA
CTGTTTTAGAAATAGGTATTGTATATATCTTTGCATTTGCAAGGTAACCCAGAAACTATT
TCTTGGTCGTCAATCCTCATAAGAAATTCAATCTCTGTCATGGAAAGAATGCCCATTCTT
AACATTAGCTTTTCCTCCCAAAACCCATCTGTGCTTTATT..........

Sequence Detail Report

Gene Symbol (Gene ID) Khdrbs2 (ENSMUSG00000026058)
Transcript ID ENSMUST00000189878
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 92 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information