MoG+ -Mouse Genome database with high added value-

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BAC clone ordering.

Target CDS Information

Gene Symbol (Gene ID)

Cspp1 (ENSMUSG00000056763)

Cross Reference

EMBL	AC102570, AC159972
GO	GO:0000922, GO:0005654, GO:0005813, ...show all
goslim_goa	GO:0005575, GO:0005622, GO:0005623, ...show all
MGI_trans_name	Cspp1-019
OTTP	OTTMUSP00000066331
OTTT	OTTMUST00000118986
UCSC	uc007ahg.1
UniParc	UPI0004620FB1
Uniprot/SPTREMBL	A0A087WS14
Vega_transcript	Cspp1-019, OTTMUST00000118986

Vega_translation

178693, OTTMUSP00000066331

Definition

protein_id:ENSMUSP00000140856
translation:

MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQ
QQPKGPLGMV

Chromosome

1

Length
Position(start - end)

2,447
10,045,086 - 10,047,534

Orient to Chromosome

plus

Link

Location : (1:10045086-10047534)
/

Detail Map

Report

Polymorphisms
Exon
Sequence

Polymorphisms Report

Gene Symbol (Gene ID)	Cspp1 (ENSMUSG00000056763)
Transcript ID	ENSMUST00000191012

Reports
substitution
cSNPs	1
Insertion	14
Deletion	28
SNPs	-1kb 10033035(c.-12051C>T), 10033340(c.-11746A>G), 10033421(c.-11665A>G), 10033430(c.-11656G>C), 10033444(c.-11642A>C), 10033622(c.-11464C>T), 10033687(c.-11399A>G), 10033762(c.-11324A>G), 10034157(c.-10929C>T), 10034241(c.-10845C>A), 10034337(c.-10749C>T), 10034668(c.-10418C>A), 10034822(c.-10264A>T), 10034878(c.-10208G>A), 10034906(c.-10180G>A), 10035240(c.-9846G>A), 10035413(c.-9673G>A), 10035424(c.-9662G>C), 10035466(c.-9620T>C), 10035595(c.-9491A>G), 10035684(c.-9402A>T), 10035731(c.-9355C>T), 10035733(c.-9353C>T), 10035840(c.-9246C>T), 10036015(c.-9071C>A), 10036040(c.-9046C>T), 10036053(c.-9033C>T), 10036157(c.-8929T>C), 10036294(c.-8792T>C), 10036328(c.-8758C>T), 10036374(c.-8712T>C), 10036420(c.-8666T>C), 10036430(c.-8656G>C), 10036446(c.-8640G>A), 10036621(c.-8465C>T), 10036688(c.-8398C>T), 10036808(c.-8278C>T), 10036900(c.-8186A>G), 10036985(c.-8101C>T), 10037121(c.-7965T>A), 10037160(c.-7926T>C), 10037194(c.-7892C>G), 10037213(c.-7873G>C), 10037246(c.-7840A>G), 10037289(c.-7797T>C), 10037305(c.-7781A>C), 10037307(c.-7779A>G), 10037582(c.-7504A>T), 5'UTR CDS 10047432(c.108G>A), 3'UTR 10038028(c.-113G>C), 10038034(c.-107C>T), 10038102(c.-39G>C), INTRON 10038325(c.-11+195A>G), 10038490(c.-11+360T>C), 10038516(c.-11+386A>G), 10038517(c.-11+387G>A), 10038557(c.-11+427G>C), 10038783(c.-11+653G>T), 10038797(c.-11+667T>A), 10038886(c.-11+756G>T), 10038935(c.-11+805A>C), 10038986(c.-11+856G>A), 10038994(c.-11+864T>C), 10039009(c.-11+879C>A), 10039152(c.-11+1022C>T), 10039181(c.-11+1051G>A), 10039359(c.-11+1229T>C), 10039456(c.-11+1326C>A), 10039555(c.-11+1425T>C), 10039587(c.-11+1457G>T), 10039626(c.-11+1496T>C), 10039712(c.-11+1582C>A), 10039825(c.-11+1695A>G), 10039840(c.-11+1710G>C), 10040262(c.-11+2132G>A), 10040330(c.-11+2200T>C), 10040357(c.-11+2227C>T), 10040400(c.-11+2270G>T), 10040527(c.-11+2397G>A), 10040529(c.-11+2399G>C), 10040575(c.-11+2445C>G), 10040625(c.-11+2495A>G), 10040716(c.-11+2586A>G), 10040891(c.-11+2761C>T), 10041050(c.-11+2920G>T), 10041220(c.-11+3090A>G), 10041313(c.-11+3183C>T), 10041491(c.-11+3361G>T), 10041532(c.-11+3402T>A), 10042128(c.-10-2948C>T), 10042129(c.-10-2947C>T), 10042330(c.-10-2746T>C), 10042372(c.-10-2704A>G), 10042379(c.-10-2697T>A), 10042387(c.-10-2689C>T), 10042778(c.-10-2298A>T), 10042798(c.-10-2278C>T), 10043142(c.-10-1934T>G), 10043145(c.-10-1931C>A), 10043163(c.-10-1913T>C), 10043210(c.-10-1866C>A), 10043307(c.-10-1769G>A), 10043360(c.-10-1716G>C), 10043416(c.-10-1660T>C), 10043486(c.-10-1590A>T), 10043551(c.-10-1525T>C), 10043607(c.-10-1469C>G), 10043623(c.-10-1453T>A), 10043820(c.-10-1256A>C), 10043857(c.-10-1219G>C), 10043944(c.-10-1132G>T), 10043995(c.-10-1081G>A), 10044039(c.-10-1037A>T), 10044218(c.-10-858T>C), 10044264(c.-10-812T>C), 10044265(c.-10-811C>T), 10044301(c.-10-775T>C), 10044381(c.-10-695T>C), 10044394(c.-10-682A>G), 10044410(c.-10-666T>G), 10044424(c.-10-652T>C), 10044439(c.-10-637C>T), 10044481(c.-10-595C>T), 10044517(c.-10-559A>T), 10044617(c.-10-459T>A), 10044649(c.-10-427A>T), 10044674(c.-10-402A>T), 10044703(c.-10-373T>C), 10044735(c.-10-341T>G), 10044740(c.-10-336G>A), 10044814(c.-10-262G>A), 10044875(c.-10-201A>G), 10044893(c.-10-183T>G), 10044896(c.-10-180T>A), 10045000(c.-10-76G>A), 10045203(c.99+19G>T), 10045206(c.99+22T>C), 10045208(c.99+24A>G), 10045225(c.99+41A>G), 10045246(c.99+62T>C), 10045300(c.99+116T>C), 10045342(c.99+158T>G), 10045402(c.99+218G>C), 10045419(c.99+235C>T), 10045564(c.99+380A>C), 10045581(c.99+397A>G), 10045585(c.99+401A>G), 10045589(c.99+405A>T), 10045601(c.99+417G>A), 10045638(c.99+454C>T), 10045726(c.99+542C>T), 10046011(c.99+827G>C), 10046082(c.99+898G>A), 10046144(c.99+960G>T), 10046323(c.100-1101A>G), 10046446(c.100-978G>A), 10046475(c.100-949G>A), 10047056(c.100-368G>A), 10047106(c.100-318C>T), 10047162(c.100-262C>T), +1kb 10047542(c.8C>T), 10047548(c.14A>G), 10047901(c.367C>T), 10048711(c.1177A>G), 10048959(c.1425G>A), 10048995(c.1461T>C), 10049267(c.1733T>C), 10049397(c.1863C>T), 10049436(c.1902G>A), 10049747(c.2213G>T), 10049771(c.2237G>A), 10050010(c.2476C>T), 10050450(c.2916C>T), 10050483(c.2949T>A), 10050518(c.2984A>G), 10050768(c.3234A>G), 10051046(c.3512G>T), 10051051(c.3517T>C), 10051057(c.3523A>G), 10051142(c.3608G>A), 10051215(c.3681G>C), 10051670(c.4136T>C), 10051789(c.4255T>C), 10052104(c.4570A>C),
Insertions	-1kb 10035813 (c.-9273_-9272insGAGGCAGGC), 10037130 (c.-7956_-7955insA), 5'UTR CDS 3'UTR INTRON 10038448 (c.-11+322dupT), 10038774 (c.-11+644dupT), 10039101 (c.-11+972_-11+974dupCTT), 10039721 (c.-11+1591_-11+1592insG), 10039725 (c.-11+1599dupG), 10040401 (c.-11+2271_-11+2272insA), 10042916 (c.-10-2160_-10-2159insC), 10044558 (c.-10-519_-10-518dupTT), 10045062 (c.-10-5_-10-4dupTT), 10046044 (c.99+862_99+863dupTA), 10046657 (c.100-766_100-765insACTC), +1kb 10049550 (c.2016_2017insAG),
Deletions	-1kb 10033810 (c.-11275_-11270delTTTTTT), 10034579 (c.-10506_-10504delTTG), 10034711 (c.-10374_-10373delTT), 10035785 (c.-9300_-9297delAGAG), 10035910 (c.-9175_-9174delAA), 10036577 (c.-8508_-8507delAA), 10037233 (c.-7852_-7849delCCAA), 10037334 (c.-7751delA), 10037354 (c.-7731_-7728delAACT), 5'UTR CDS 3'UTR INTRON 10038805 (c.-11+681_-11+683delATC), 10038810 (c.-11+681_-11+683delATC), 10039471 (c.-11+1343_-11+1350delCGAAACAT), 10039649 (c.-11+1520_-11+1527delCAGCAGCG), 10041352 (c.-11+3225delC), 10041462 (c.-11+3334_-11+3339delTTGTTT), 10041940 (c.-10-3133delC), 10042460 (c.-10-2606_-10-2603delATAG), 10042968 (c.-10-2107_-10-2104delCCCC), 10043567 (c.-10-1504_-10-1502delTTA), 10043937 (c.-10-1137_-10-1132delACATTG), 10044331 (c.-10-741delT), 10044564 (c.-10-511_-10-509delAGG), 10045372 (c.99+192delA), 10046485 (c.100-938_100-930delCAAAGGGAT), +1kb 10049952 (c.2419delA), 10051335 (c.3802_3803delGA), 10051374 (c.3841delT), 10051381 (c.3848_3849delTT),
coding sequence substitutions
premature termination by the nucleotide substitution	0
synonymous num	1
non-synonymous num	0
synonymous substitutions	10047432 (p.Ala36Ala),
non-synonymous substitutions
B6 transcript (ENSMUST00000191012)	MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQ QQPKGPLGMV
MSMv4 transcript	MADSLDEFIEEQKAKLAKDKAELESDPPYMEMKGKASEKLSENSKILISMAKENIPPSSQ QQPKGPLGMV
homology	100.00 (70 / 70)

Exon Detail Report

Gene Symbol (Gene ID)	Cspp1 (ENSMUSG00000056763)
Transcript ID	ENSMUST00000191012

No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........AGCAAGACAGTCTACTCAGCAACCTTTTGTAATTTTTTTCTTCACTCTCC TTAATACAATTTGCTCTAAAGAATCATTTGACTTGTCGTCAATCCCAAAGATACATGGAT TTGGCTGGGGAAAATGCTTCTAAGCTCTCTCTTATAATTCCTGGCTTACATGAATTGTAG TAGTATTGTAGGGAACTGGTAAGAGGATTTGGTATGTCTCTAAAGAGCTGAAAAAAAACC AAACCAATCAATCCAAGAGCTCATGGATTTTTTTTTTTTTTTTAAATCAATGCCCTGCTC ATTCGATTTCTGAAAACAGCCACGCTCTTCAGTTTGGGAATCTACTGAAGGCTGCAACTA ACTGCATGTAGCCACCAGGTTCAAGGCAGAGTGTGTGAGATTTACAAAAATAATCATGTT GACAAAAGTCGCACCCCAAGTCAGCCCTTTACACGCCCTGAAGGCAAGAAACTTTCTAAA AGGGGAATCGAAGCAGGCCCTAGAGGACAGGTAAGGCTCTACTGACAAGGCAGACTAAGG CCACTGTGGCCAATATTCGGTCGACGCCCCACAGAAAGCCAAGCTCTCCACACCCTTCAT CTCCCACCCCTCGCGGGTCTCTCACAGTCCCGCCATCCCTGCCCTCCCCTGCGTCTCGCC AGGGACCTCCTCACTCCTTAGTCCAGGGTTTCGCCGCCAGGATTTCTTGTTGTTGTTTTT TGTCATATTTGTAGATTTCATCGATACTCTGCGCTTCCTGCATGTTGTTGGCCAATTCCC AGGTTTTCTGGGCCATACCACTCCCGGAAGCTGCCATGGCCGAGGCACCGGAGAAGCTGT CGCTCCACAATCAAGATGCAACTTTCTTCTACTGGGCCTCAGCGTGCGGGCTTTGGACCT TCCCCACCAGGGTGCACACTCACTAGACTCTCAAGGCAGCCATGACACTTGAGACCGGAG GTGACGTTGGTCCAGACCATTCGCGCGCTGGGGCGCGGCGGCGGCGCAGC
1	EXON 1	10,038,006	10,038,130	-	-	125	GACATAGAAAACACTTCCTTAGCGTTGGTTCGGCTCGGCTCGGCTAAGATCAGTCTTGCC GGTGAAACGAGAACATGCTGGCTCGGAAATCCGTTCCTGTGAACTGCGAGGGACGCAAAG CCTCG
	INTRON 1 - 2	10,038,131	10,045,075			6,945	GTGTGGGAATGGTACAGCCTTTCGC..........CTCACTGAAGACTTTTTTTTTTCAG
2	EXON 2	10,045,076	10,045,184	-	0	109	AATCTACAAAATGGCAGATAGCTTGGATGAATTTATTGAAGAGCAAAAAGCGAAACTGGC CAAAGACAAAGCAGAATTGGAAAGTGATCCACCGTACATGGAGATGAAG
	INTRON 2 - 3	10,045,185	10,047,423			2,239	GCAAGATTAGTAATTGTCTTGCAGT..........TGATTTGTAAATATGTCTTTTCCAG
3	EXON 3	10,047,424	10,047,534	0	-	111	GGAAAGGCATCAGAGAAACTCTCTGAAAACAGTAAAATATTAATCTCTATGGCTAAGGAG AACATTCCACCAAGCAGCCAACAACAGCCCAAGGGACCCTTAGGTATGGTA
	3' upstream sequence						CTGTATGTGTGGAGCTAACTTTAAGATATCCTTTCTTTGTAGGGCATTGTGAAAGAGGTT TGTTTCTTCAGAAAAAAGATTTCTTTGGATCTTCATTTTTGAGTCTTACATATGGCAATG GGGTTTGTGTATGAAATGTAACTCAGAGAACGTTACCTATTTCATTGATGTTGCCTAATT GTGATTGGTGGAAATGATATTAGAAACTGTGTATGATGTAACTAAAAAATAGTAATAAAA TTTTTAAGTGTGTTTATGTATATGTATACATGAGAGAGTCTGTATTGTTTTAAATTCAAA GAAGGGTCTAGCAAGATGGCTCAGCTGGTAAAGATGCTTGCCACCAAGCCTCAGGACCTG AGTTTGTCCCCCAGGACCCATATGGTGGTGTGCACACACATATACAAGTAAATGTGCTTA CTAAAACAGAGCAAGGAAGTATAAAGTATATGAAAAGTTATTTTGTTAGGGACCATTTTT TGTGTGTATGTGTATGCACGTGTATGTGTGCATATCTGTGTAGTGGCCAGAGGTCATCCT TGGATTGTAGTTCCTCAGAGGAGGTCTACTTTTTGAGACAGAGACATTTACTGGAACCTG AGTTTGCCAATTAGACTATGCTTGCTGGCCATCCGCCAAATTGGGTTCCACTTGTTTCTT CTTGGATTTCAAGTGTGTACCACCACACCCAGTTTTCTACATAAACGTTAGGGATTGAAC TCAGGGCCTCCTTCTTACATGGCAAGCTCTTTTACCTATTAAGCTATCTCCCCAGCCCAA GGACTATCCTCTTGTTGATGACCGTATTGGACCTATAAAGTTAATATTGCAGCCATACTG ATTTTTAAAATTATGTCTTAGTATGAAGTCTTTGGAAACCTTTTTTAAAAGTACATATTA GCTTGTCGATACATTTTTACCTTAAAACACATAATATTGTCAATAATATATATCTGGTGA CTGAAACATTTTCACAAAAAGTAAGTCAAATATAATGGAT..........

Sequence Detail Report

Gene Symbol (Gene ID)	Cspp1 (ENSMUSG00000056763)
Transcript ID	ENSMUST00000191012

		SNP Information
Strain :
Sequence Retrieve :
Exon translate : CDS Start ( 1 ) - End ( 70 ) -
Strand :	forward reverse
Show sequence :	nucleotide amino acid
Color information