top page

Tutorials are available here.

Target CDS Information

Gene Symbol (Gene ID) Lmbrd1 (ENSMUSG00000073725)
Cross Reference
CCDS CCDS35528.1
EMBL AK003084, AK032560, AK152170, ...show all
Fantom 0910001K20, 6430596H08, I1C0029P03, ...show all
GO GO:0005158, GO:0005764, GO:0005765, ...show all
goslim_goa GO:0003674, GO:0005575, GO:0005622, ...show all
MGI_trans_name Lmbrd1-001
OTTP OTTMUSP00000066757
OTTT OTTMUST00000120742
protein_id AAH25579.1, AAH27774.1, AAH31902.1, ...show all
Reactome R-MMU-1430728, R-MMU-196741, R-MMU-196849, ...show all
RefSeq_mRNA NM_026719.2
RefSeq_peptide NP_080995
UCSC uc007amt.1
UniParc UPI00000E888C
Uniprot/SWISSPROT Q8K0B2
Vega_transcript Lmbrd1-001, OTTMUST00000120742
Vega_translation 178853, OTTMUSP00000066757
Definition protein_id:ENSMUSP00000140783
translation:
MAAAAAELVIGWCIFGLLLLAILAFCWVYVRKYQSQRESEVVSTVTAIFSLAVALITSAL
LPVDIFLVSYMKNQNGTFKDWADANVTVQIENTVLYGYYTLYSVILFCVFFWIPFVYFYY
EEKDEDDASKCTQIKTALKYTLGFVVICALLLLVGAFVPLHLPNNNNSTEWEKVKLLFED
LGTGQGLAALSFSISSLTLIGMLAAITYTAYGMSALPLNLIKGTRSTAYERLENTEDIEE
VEQHIQTIRSKSKDGRPLPARDRRALKQCEERLRTLRKRERHLEFIENSWWTKFCGALRP
LKIIWGIFFILVALLFVISLFLSNLDKALHSAGIDSGFIIFGTNLSNPLNMLLPLLQTVF
PLDYILITIIIMYFIFTSMAGIRNIGIWFFWIRLYKIRRGRTRPQALLFLCMILLLIVLH
TSYMIYSLAPQYVMYGSQNYLIESNITSDAHKGNSTLAVPKRCDADAPKDQCTVTRTYIF
LHKFWFFSAAYYFGNWAFLVVFLIGLIVSCCKGKKSVIEGVDEDSDLSDDEPSAYSA

Chromosome 1
Length
Position(start - end)
83,978
24,678,757 - 24,762,736
Orient to Chromosome plus
Link Location : (1:24678757-24762736)
/

Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lmbrd1 (ENSMUSG00000073725)
Transcript ID ENSMUST00000191471
Reports
substitution
cSNPs5
Insertion59
Deletion76
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num5
non-synonymous num0
synonymous substitutions 24744268 (p.Ala328Ala), 24744280 (p.Ala332Ala), 24744292 (p.Ser336Ser), 24744307 (p.Phe341Phe), 24746867 (p.Leu414Leu),
non-synonymous substitutions
B6 transcript
(ENSMUST00000191471)
MAAAAAELVIGWCIFGLLLLAILAFCWVYVRKYQSQRESEVVSTVTAIFSLAVALITSAL
LPVDIFLVSYMKNQNGTFKDWADANVTVQIENTVLYGYYTLYSVILFCVFFWIPFVYFYY
EEKDEDDASKCTQIKTALKYTLGFVVICALLLLVGAFVPLHLPNNNNSTEWEKVKLLFED
LGTGQGLAALSFSISSLTLIGMLAAITYTAYGMSALPLNLIKGTRSTAYERLENTEDIEE
VEQHIQTIRSKSKDGRPLPARDRRALKQCEERLRTLRKRERHLEFIENSWWTKFCGALRP
LKIIWGIFFILVALLFVISLFLSNLDKALHSAGIDSGFIIFGTNLSNPLNMLLPLLQTVF
PLDYILITIIIMYFIFTSMAGIRNIGIWFFWIRLYKIRRGRTRPQALLFLCMILLLIVLH
TSYMIYSLAPQYVMYGSQNYLIESNITSDAHKGNSTLAVPKRCDADAPKDQCTVTRTYIF
LHKFWFFSAAYYFGNWAFLVVFLIGLIVSCCKGKKSVIEGVDEDSDLSDDEPSAYSA*
MSMv4 transcript
MAAAAAELVIGWCIFGLLLLAILAFCWVYVRKYQSQRESEVVSTVTAIFSLAVALITSAL
LPVDIFLVSYMKNQNGTFKDWADANVTVQIENTVLYGYYTLYSVILFCVFFWIPFVYFYY
EEKDEDDASKCTQIKTALKYTLGFVVICALLLLVGAFVPLHLPNNNNSTEWEKVKLLFED
LGTGQGLAALSFSISSLTLIGMLAAITYTAYGMSALPLNLIKGTRSTAYERLENTEDIEE
VEQHIQTIRSKSKDGRPLPARDRRALKQCEERLRTLRKRERHLEFIENSWWTKFCGALRP
LKIIWGIFFILVALLFVISLFLSNLDKALHSAGIDSGFIIFGTNLSNPLNMLLPLLQTVF
PLDYILITIIIMYFIFTSMAGIRNIGIWFFWIRLYKIRRGRTRPQALLFLCMILLLIVLH
TSYMIYSLAPQYVMYGSQNYLIESNITSDAHKGNSTLAVPKRCDADAPKDQCTVTRTYIF
LHKFWFFSAAYYFGNWAFLVVFLIGLIVSCCKGKKSVIEGVDEDSDLSDDEPSAYSA*
homology100.00 (538 / 538)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Lmbrd1 (ENSMUSG00000073725)
Transcript ID ENSMUST00000191471
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........GTAGCGACGATGAAGTTCATCCATAAACTGTTTTGACTGCATCCTAAGTG
TCTTATTGTCCTAAGGATGGAAGTGTTTATTGGGTTCACAGTGCAAGGTTTCAGCGCATT
GTTGTGGTGATGTTATAGACAGCAGGAACTAGAGGTGGCTACTCACATCCAAGGTCAAGC
GCAGACAGCAATGAGTTGTGCATGCATGCTAGGTAAGTCTTCAGTTCTGGTCCAGGGATG
TGGAAATGTTACCACCCACATTCAGGGTGGGGCTTCTCACCTCAGCCCAATTAAAGGAAA
AAATCCCTCACAAGCCCACAGGACAATGTATTCGAGACAATTTGTCACTGAGTCTTCCGA
GATGGTTCTGCATTGTATCAAGCCCACAGACAAACGTCCACAATCAAAACTAAACATCAC
GCCGGGGTTTGTTTATTCAATTTAAATATACACTAATACACCACGGGACCCAGGCAAGCA
TCCCAGGTTTTCCCTCAGCTTCACATAAGATTTACAACAATCTCTGTTTTGTTCACTTGA
GCATATTATTAGCACCTACAATTCATAGACTCGGACATTTTAATTGTATGAAACCATCAT
GGAAATTCACAGGTACGCGCAGATGGAAAAAACAAAACAAAACAAAACATCACGTGGTAG
CACAGTGCCGTCAAGCAATGACGTGACCTGGTCATCAGCAAATTATAAAGTCATCTGGGC
AGATGACATTCTTTTATTCTGAGTCATTCCTGCACCAGGATGACTTCTGATTGCATAATG
GGATCAAAACCTTGTTTTTGGAAGCAATGAAAACCCGTAATGTCACTCTACATTCTGAGG
CACAGACATAGCCCTACCTCGGTAAAGCTCCTAGAGTGCCAGCAAGATCAAGTGGCACGC
AGCCCGCGCGTGGGCGGGCAGCGTGGTGACGTCACGGTGCGTCGGGTGCGCCCCGCCTCG
GCTCGGCTGGTCGCCAGGGGACGCTCGCGGGCCGGGTCTCCTTGGCAACC
1 EXON 1 24,678,630 24,678,816 - 0 187
CTCCGCTCTGCCCCTCCGCCCCTTTAACCTTTAGGCTGCGCAGTTCCGGGTCCCTCTTCG
TTCCGTCCCGTCCCGTCCCGTGCCTTCCCTCCCCACCCCTTTGGGCTTATCCGGACCGGA
AGCGAAGATGGCGGCGGCGGCGGCCGAGCTGGTGATCGGCTGGTGCATCTTCGGCCTCTT
GCTCCTG
INTRON 1 - 2 24,678,817 24,685,396 6,580
GTAGGGGAGGCGCTCCGAGTTCTCC..........GGTATTTCTTTTTGCTGTGTTTCAG
2 EXON 2 24,685,397 24,685,573 0 0 177
GCTATTTTGGCCTTTTGCTGGGTCTACGTTCGGAAGTACCAGAGTCAGCGGGAAAGTGAG
GTCGTCTCCACTGTGACAGCCATTTTTTCACTGGCTGTTGCTCTGATCACATCAGCACTG
CTGCCGGTGGATATATTTTTGGTTTCTTACATGAAAAATCAAAATGGCACATTCAAG
INTRON 2 - 3 24,685,574 24,692,940 7,367
GTAATTAGTATTGTGCTATGCGATT..........GCTGTCTCTCTCCTTTTTCTCCTAG
3 EXON 3 24,692,941 24,693,001 0 1 61
GACTGGGCTGACGCCAATGTCACCGTACAGATTGAGAATACCGTTCTGTATGGCTACTAT
A
INTRON 3 - 4 24,693,002 24,704,820 11,819
GTAAGTATCGGCCAGCTTCACTTTT..........AGGCTTTTGTTGTTCCTGCCCACAG
4 EXON 4 24,704,821 24,704,918 1 0 98
CTCTGTATTCTGTCATTCTCTTCTGTGTGTTCTTCTGGATCCCGTTTGTGTACTTCTACT
ACGAAGAGAAGGATGAGGACGACGCCAGCAAATGCACC
INTRON 4 - 5 24,704,919 24,705,976 1,058
GTGAGTGCCTTACGATGGGCTCCTC..........TACTTTCTCCCCTCCTGGTCTCTAG
5 EXON 5 24,705,977 24,706,044 0 2 68
CAAATTAAAACGGCGCTCAAGTACACTTTGGGATTTGTTGTGATCTGCGCTCTGCTGCTT
CTCGTTGG
INTRON 5 - 6 24,706,045 24,711,511 5,467
GTAAGTTTTGATATTTCAGTGTGCC..........GACAGAGTTCTTTTCTCCTTTGTAG
6 EXON 6 24,711,512 24,711,600 2 1 89
TGCCTTTGTGCCTCTGCATCTGCCCAACAACAACAACTCAACAGAGTGGGAAAAGGTGAA
GCTCCTGTTTGAAGACCTTGGAACTGGTC
INTRON 6 - 7 24,711,601 24,714,908 3,308
GTAAGTGTTAAAACATTTTTTTCAA..........GTTGACAATGTCTTTGTTTTCACAG
7 EXON 7 24,714,909 24,714,982 1 0 74
AAGGCCTGGCAGCTCTGTCCTTTTCCATCAGCTCTCTGACCTTGATTGGGATGCTGGCGG
CCATAACCTACACA
INTRON 7 - 8 24,714,983 24,728,545 13,563
GTAAGTGCAATGGGAGAGTCTGAGA..........AACATTTACACATCGTCTGTTTCAG
8 EXON 8 24,728,546 24,728,671 0 0 126
GCGTACGGCATGTCGGCATTACCTTTAAACCTAATCAAAGGCACTAGAAGCACTGCCTAC
GAGCGCCTGGAGAACACGGAGGACATCGAGGAAGTGGAGCAGCACATTCAGACGATTCGA
TCCAAG
INTRON 8 - 9 24,728,672 24,731,746 3,075
GTAAGCTCTGCCTCATCGCTGGAAG..........CTTGATTTTGTTCTATTATTTGTAG
9 EXON 9 24,731,747 24,731,899 0 0 153
AGCAAAGATGGTCGACCTTTGCCAGCGAGGGATAGACGTGCCTTAAAGCAATGTGAAGAA
AGACTAAGAACGCTTAGGAAAAGAGAGCGGCACTTGGAATTCATTGAAAACAGCTGGTGG
ACGAAATTTTGTGGTGCCCTGCGCCCCCTGAAG
INTRON 9 - 10 24,731,900 24,743,882 11,983
GTAAATGGAGTTTTATAAAGTAGTT..........CTAATGAATATATTTTTCATTTTAG
10 EXON 10 24,743,883 24,743,947 0 2 65
ATCATTTGGGGAATATTTTTCATCCTCGTTGCGTTGCTGTTTGTAATTTCTCTCTTCCTG
TCAAA
INTRON 10 - 11 24,743,948 24,744,255 308
GTAAGTACAGTAGACACGCTTTCTA..........CACTCTTCACAACTCTGTGTTTTAG
11 EXON 11 24,744,256 24,744,358 2 0 103
TTTGGATAAAGCCCTTCATTCAGCGGGAATAGATTCCGGTTTCATCATCTTTGGAACTAA
CCTGAGCAATCCACTGAACATGCTTTTGCCGTTGTTACAAACA
INTRON 11 - 12 24,744,359 24,744,865 507
GTAAGTAACATGTCAACCATTTCCC..........AGTGTAATCTTCATCTTTTTTTCAG
12 EXON 12 24,744,866 24,744,970 0 0 105
GTGTTCCCTCTTGATTACATTCTTATAACAATTATTATTATGTACTTTATTTTTACTTCG
ATGGCAGGAATTCGAAACATTGGCATTTGGTTCTTTTGGATTAGG
INTRON 12 - 13 24,744,971 24,746,804 1,834
GTAAGTATGTGTTATTTTCTGGGTT..........GTGAAACTTTGTCATTTTCCTCCAG
13 EXON 13 24,746,805 24,746,954 0 0 150
TTATATAAAATCAGAAGAGGGCGAACCAGGCCTCAGGCACTCTTATTTCTCTGCATGATC
CTTCTGCTCATTGTCCTTCATACCAGCTACATGATCTACAGTCTCGCGCCTCAGTACGTG
ATGTACGGAAGCCAGAATTACTTAATAGAG
INTRON 13 - 14 24,746,955 24,748,799 1,845
GTAAGTGCAGGATATAAAATTTTGC..........TTTTAATCACATTCTCGTCTTTCAG
14 EXON 14 24,748,800 24,748,878 0 1 79
AGCAATATAACTTCTGATGCCCATAAAGGCAATTCAACCCTCGCTGTGCCAAAAAGATGT
GACGCAGATGCCCCTAAAG
INTRON 14 - 15 24,748,879 24,762,191 13,313
GTAAAGCAGCTGTTGCCACACTGTT..........ATAATTGTTTATTTGCTCTCTTTAG
15 EXON 15 24,762,192 24,762,283 1 0 92
ATCAGTGTACTGTTACCCGAACATACATTTTCCTCCACAAGTTCTGGTTCTTCAGTGCTG
CATACTATTTTGGTAACTGGGCCTTTCTCGTG
INTRON 15 - 16 24,762,284 24,762,622 339
GTAAGTCTATGAAACCAAACATGAC..........TAACACTGCTTATTTGAATTTAAAG
16 EXON 16 24,762,623 24,765,448 0 - 2,826
GTGTTCTTGATCGGATTAATTGTATCCTGCTGTAAAGGGAAGAAGTCAGTCATAGAAGGA
GTGGATGAAGATTCGGACTTAAGTGATGATGAGCCGTCTGCCTACTCTGCGTGAACGGCC
TTCTGTCCTAAGGGCTTAATGAAGCTGGCTGAATATCTATTATGCGTTTTCAAAAGTTTA
AAGTAACATTAAAATGAACTGTCTAGCTTTCATCAAAAATGAGAGCATGGCCATTAAAAA
GTACTATATTTTTTATGTTTCCTGAAGTAACATTATTGTATCATAGATTAACATTTAAAA
TTGCTATAATACTGTGTAAATACAGAGTTTCCAGGTTTGTGAGGGAATGTTTGTGGAAAT
TTTCTTTATTGTAAAATAGTGTTAAATTTATTAAAATCTTACACAATATACATTCCCTTT
GTTGCTTTTAAGAAACATAAGAAGTCACTTTGTCTTGTGCCTTAGGGTCTCTGGAATAAT
GTGAAACTTTTAAGTAGCTTCCGCTGATTGGCTAAACAATGTCTCAGTATTGCTTGTGGG
TAAGCATAACTCATGGGCAGCTTGCTTTCAATTCTGCCCATAACATAATGAGTCTAACTC
AAGTAGAGTTCGTGAAAAAGTGTTAAACTGCCTAAAACCACAAGACTCTAAGATGTGTTC
CAGGTGGCAGTGTTCAGATCTTAATCCATGGAGTACCTCTACAAGAATATGTAGATAAAA
TTTGTTTTATAGAAGGCTTTGAAACTTGGATGGTCATAAATGGAAATATCAAGAATGAAT
GCTGAAGACTGAGCTTACTAAGCGTGGTAGGTCACGTGACAGCATACTCAGCTGCTTCTC
ATGTAAAGGATTTGGAAACCTGTGAAAGAAAATGAAAGTTGTGTGACTTAACAGAGTTTT
CTGACTGCGTTCTGGGCAGTGAAAATAAAGGCTTAATTCTCTAGTGTCAGCTAGGACTTA
TTCAAAAGTATTTACCGGGATGCTTGAAGTAAAAGATCTGTATGGCTCAGGAGAAGACCT
AAGAGTTAACTCGTCTGCCCCTGAATCTTCGGCCCAAGTTCTGACTGTACTTGCTGCTCT
GATTGATTCCCTGCCTCACCTGAGAAGCTTCTAGAACCTGCTAGGAGACTTGGCTTCTGT
TCCCACTCTTACGTGATTCACCGGGATGCCCATCCCTTCTGCTCCTAGTTCACGTTTTGG
GGGTGTGGGTCAGTCCCTTGGCCTCCCCCTGCATCCCGACCCTGTACTCTTGCTTGTCTG
TAAGCTCCATTACTGCTTCAGTTGCAACACTAAGCCTCTCTGCTGTTTGTTTATAGCAAA
AGGCCTGGCCTGTCAGTATTAGGCTCCCATATTGTGCCCACCAAAAATCAAGACCGCCTT
ATATATGAAGCCCATCATGAAGTTGTGTTGGTTTTTTTCTGCCTATCTTTTCTTTACTCT
GTCCTCTCTTCTATCTACTTGGTGCCACTTACCCTGTTAGAATATATCCTTCCAAAGTCA
CATGTTGAAGTCCTCACTCTAGCTGGAGAAATGGCTCAGCAGTTAAGAGCACTGGCTGCT
CTTCAGAGGTCCTGAATTCAAATGCCAGCAACCACTTGTGATGGGATATGATGCCATTTT
ATGGTGTTTCTAAAGTCAGGGCACTCATATATATAAAATAAATAAATTTAAACAAAGAAA
GGTAATCTAGGTAAGATTAGGCCGTTGAGTGGATCCCTCCTAGAGATGTTTGGGCTCTGC
AGGCAGCTTGGGGACGAAGTCATGGAAGGACACAGAAAAAGGCAATCTATAAGCCAAAGA
AAGAGACCTCTAGAAGCCAGCTCTGCCAGCACTTTGCCTGTCAACATCTGGCTTCCATAG
CTGTTGGATAATACATTTTCACTTGACAACCCATTGAGTCCATGGTGTTTGCCATTGAGC
CGAGGCAACTAACTAACACACGCTGCCTCCTAAACTTCCTCACTAGCTGTGCTGCCAAGT
CCTGACTCCTCTCAGCCTTTTCTTGACATTTAAAACAGAAATGGAATTAGTTCATTGCTT
CGCTGTGAAAGGCTTTCTTTTATTTTAAAATGAAACCCGTAAGCCCCTGCATGGTATTTA
AGGCCGTTCTGATGTTTTATTTGCTTGCAGGGCTCTTGGCCATTTCCTCTGTATTTACAT
GAGTGATTCCTCATAGCCGTACTTGAATGGTTCCTTCTGCATACTTGAATGCCCAGGCAG
CCTTTCCCCTAAGGAAATTCTTTATCAACCCTTGGGCTTGGGGTTATGTTGCTCCTCTAA
GGGCTGGAGGAGAGAAGATGCTGGCTCTTGGCTGTTTGTGTGGACCATGACAGGACAGCG
GATGGTGACTGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTGTTC
TTGGGAACCAGAATAACTCGTAGAGAATACTCGTAGAATAACATGTAGAGAGTACTAATA
GGTGAATTTGCTAATTTGAAGCTATAAACATGTCTACATTGGTTAAGCCTACATAAACTA
TACTTTTATCAAAGTATCAGGAGGCATATAAATCTTTTGAGACTTTTTTTGCTATCTAAT
AAGTTTAGAAATATCCTAATTATTCTATATACTTACGATAGGATTTTTTTTTGTTAGACC
AACTTCTTAGCTTACCATGGTACTCTTTATTGTTTAAACAAGAAAATTTTAAATATATAT
TTTGCTCCTTTCATTTCCTGAGTGTTAAGAAGCCTACTTTATTCAAATGCTACTTTGTCC
CCCTTTTGGTGTAATGAAATGTGTTGGACTTTATATTTCCATAAAGCTGACTTCTAAGTG
TCACGA
3' upstream sequence
CTTCGACTAATGAACAGCTTCTCTCCTTTGAAGTCTTCACAGAAATGCCTAAATTAGAGA
TCATTCAGAGCATTGGCTTTCCAAAGACTGAGGGCCCTCATGTCCCATGTCGACTTCAAA
GTGATCAATTTATGTAGCCATGAATCGGAAATGAGAAGCCTGGAACCAGCTTCTAGCCAG
CTCAGGGCTGCTGCAGCAAAGGAAGTTTAAAAAGGAAACAAAACAACAACAACAACAACA
AAACCCTTACTGTGCAGGTAGAAAACTGGTTAGGAGCTCCAAGGAGAAAAAAAAAATAAA
GCAGCAATGTTTTCATGAACCTACAAGATAGATCAGCAGTGGCTCGGGGCGTGGTGGCAC
GCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGAATTTCTGAGTTCAAGGCCAGCC
TGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCCCGAAAA
AACTAAAAAAAAAAAAAAAAAAAAAAAAAAAGATCAGTAGGTAGTTTGCACACAGGCCTT
CCCATCTGAGTCCCATCCCAGTCTCCCAAGGAGAACAGGCCAGAGAGACCTGGATCTCAG
AGGACCCAGAGAGAACAGGCTCCTGAGACTGGTCCCTGACCTGCCTATGCCTGCACTCCC
ACATATGTAGCTTAAACTAATAGTGTTTTCTGGTGTACTACTAAGGTCTTATGAATGTTA
CATATTTAAAGTAATGTACTGATTTAGAAACAATCTACAGACACAGCACACTTGATGTTG
GCCACTTTGTCATCTTTCTGTCACTATGACAAAACAAAATCATATTAAAAGGAACTTTGG
TTCCCAAATGCAAATGTTTGAGTTGATGTTTTCCTTGCCCCCAACCTTTTTGTGAGGCCA
AATGACATGGTAGGGATCAGACAGTGGGTAAAATACCTTGTGTTCCAGTAGCAGTGAGAG
TGTGGGGCTCCAGTGTCCCATTCCAGAGCACACACCACAT..........

Sequence Detail Report

Gene Symbol (Gene ID) Lmbrd1 (ENSMUSG00000073725)
Transcript ID ENSMUST00000191471
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 538 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
Color information