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Target CDS Information

Gene Symbol (Gene ID) Il1r2 (ENSMUSG00000026073)
Cross Reference
EMBL AC161534
GO GO:0004910, GO:0019221
goslim_goa GO:0003674, GO:0004871, GO:0007165, ...show all
MGI_trans_name Il1r2-004
OTTP OTTMUSP00000068937
OTTT OTTMUST00000127994
UniParc UPI00053BD8D4
Uniprot/SPTREMBL A0A0A6YX83
Vega_transcript Il1r2-004, OTTMUST00000127994
Vega_translation 179115, OTTMUSP00000068937
Definition protein_id:ENSMUSP00000141882
translation:
MFILLVLVTGVSAFTTPTVVHTGKVSESPITSEKPTVHGDNCQFRGREFKSELRLEGEPV
VLRCPLAPHSDISSSSHSFLTWSKLDSSQLIPRDEPRMWVKGNILWILPAVQQDSGTYIC
TFRNASHCEQMSVELKVFKNTEASLPHVSYLQISALSTTGLLVCPDLKEFISSNADGKIQ
WYK

Chromosome 1
Length
Position(start - end)
9,706
40,102,429 - 40,112,136
Orient to Chromosome plus
Link Location : (1:40102429-40112136)
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Detail Map


 

Report

Polymorphisms Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Il1r2 (ENSMUSG00000026073)
Transcript ID ENSMUST00000191671
Reports
substitution
cSNPs5
Insertion39
Deletion38
SNPs
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Insertions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
Deletions
-1kb
5'UTR
CDS
3'UTR
INTRON
+1kb
coding sequence substitutions
premature termination by the nucleotide substitution0
synonymous num4
non-synonymous num1
synonymous substitutions 40102437 (p.Ile3Ile), 40102458 (p.Gly10Gly), 40105508 (p.Tyr118Tyr), 40112063 (p.Thr159Thr),
non-synonymous substitutions 40105463 (p.Asn103Lys),
B6 transcript
(ENSMUST00000191671)
MFILLVLVTGVSAFTTPTVVHTGKVSESPITSEKPTVHGDNCQFRGREFKSELRLEGEPV
VLRCPLAPHSDISSSSHSFLTWSKLDSSQLIPRDEPRMWVKGNILWILPAVQQDSGTYIC
TFRNASHCEQMSVELKVFKNTEASLPHVSYLQISALSTTGLLVCPDLKEFISSNADGKIQ
WYK
MSMv4 transcript
MFILLVLVTGVSAFTTPTVVHTGKVSESPITSEKPTVHGDNCQFRGREFKSELRLEGEPV
VLRCPLAPHSDISSSSHSFLTWSKLDSSQLIPRDEPRMWVKGKILWILPAVQQDSGTYIC
TFRNASHCEQMSVELKVFKNTEASLPHVSYLQISALSTTGLLVCPDLKEFISSNADGKIQ
WYK
homology99.45 (183 / 183)

Exon Detail Report

Target Strain  MSMv4  JF1v3  KJRv1  SWNv1  CHDv1  NJLv1  BLG2v1  HMIv1  BFMv1  PGN2v1
Gene Symbol (Gene ID) Il1r2 (ENSMUSG00000026073)
Transcript ID ENSMUST00000191671
No. Exon / Intron Start End Start Phase End Phase Length Sequence
5' upstream sequence
..........TCTCCAGGGTGTCACCCCCAACCAGGAGGTCGAGAAGCTGCAGTGCTCGG
ATCTTTCAGCTTCATCCAGGCGTCCTGAGCAACCAGCTGTGACTTCACCACTGTGAGTCT
TCACCAACCACAGCCGCAAGCAGAATGAGGGTCACTGGGGTGCATCACCAGCTCTGGAAG
CTGAGGGAGGTTAAGGAAGCAGGGGTCAGCTGTGGGCAGCTGGGAGGTGAGTAGGCTATT
TCAAAAGGTGATGTTAGCAGGAGAGGCAACAGAGTGTGGGTCCCAGGATGCTCTGGGGTA
CAATTCTCTTCTGTTCCTTATAGAACAATGTGATCTGGCCTTGCTATCTCAGGCTCTTTG
TTATCTTGACAAGATGAGAAGACTATTCACTGCCTGGAGGCCTGGGCCATCAGAACCTGG
TGCGTGGAGCACAGAGCAAGCTAGAAAGTGCTGTGAGCCTCAGTTCTCTGTGCCTCCTGT
GGCAATGCAGGGACATCAGAACATGAAGAAGAAGTTCTGTGCTCTGTCTACAAGCCCAGT
CCTGTATCCTTAGGGGACTGGCTCCCAGGGCCAGACTGGGTCACATGTTCACTTCACTGC
ATAACTCTGGAGGAGAAAATGGAACCCATCCCCTCTCAAGCACCCCATCTCTTACTCCTT
CACCCTCCCATGTGTCACCACCTTCTAAGTACTCGACCTGGGTCCTGACACCCGCTTTTG
CTTCACCAAGCTGCCTGGGCCGGGATGCCCTGCCAAGCGAGAGCAGCTATAGCAGGTCCA
GGCCTGAGCAGGGAGTGGAGCAAGGCAGGTGAACAAGGTCAGGAGCTGGCAAGGTTGACG
TGACCTGAGCCAGCAGCTGTAGGCTTCCTAAGTTCTCTACACCTGGAGTAGGTTGGGCCT
TACTGCTTAGAACAGTGCTGTGCCCAAGAGCTGAGGCAGGGCCTGCCTGCTTCTTGCTAG
AATTCACCTGACATCAGCTGCCTTGTGGTCTTGAGTCCTTGTAGCTCAGG
1 EXON 1 40,074,079 40,074,248 - - 170
CTGGGACTTTGAATCCTCTGTGTTCATTAGTATATGCTAGCTCTGTGGCGGTGGCTGACA
GGACTGGATTTGCTCTCAGCCTTTTCAGATGTCATTTTCATCCTTACACAACCGGTACTG
AGAATGCGATTGTCTCCACTGTGCAGGAGAGAACATTGAGGCACCCGAGG
INTRON 1 - 2 40,074,249 40,102,388 28,140
GTAAACCACATGCCCAGTTACTATC..........CTCCTCCCTCTTTTTCCTCCCATAG
2 EXON 2 40,102,389 40,102,537 - 1 149
GCTCCAAGGGTCCTGTGCGCTCAGGAAGTTGGTGCGGACAATGTTCATTTTGCTTGTGTT
AGTAACTGGGGTTTCTGCTTTCACCACTCCAACAGTGGTGCACACAGGAAAGGTTTCTGA
ATCCCCCATTACATCGGAGAAGCCCACAG
INTRON 2 - 3 40,102,538 40,105,263 2,726
GTGAGGAACGAAACGACCACTTCAG..........AATGCCCACTATCTCTGACTTACAG
3 EXON 3 40,105,264 40,105,522 1 2 259
TCCATGGAGACAACTGTCAGTTTCGTGGCAGAGAGTTCAAATCTGAATTGAGGCTGGAAG
GTGAACCTGTGGTTCTGAGGTGCCCCTTGGCACCTCACTCCGACATCTCCAGCAGTTCCC
ATAGTTTTCTGACCTGGAGTAAATTGGACTCTTCTCAGCTGATCCCAAGAGATGAGCCAA
GGATGTGGGTGAAGGGTAAGATACTCTGGATTCTGCCAGCAGTGCAGCAAGACTCTGGTA
CCTATATTTGCACATTCAG
INTRON 3 - 4 40,105,523 40,111,954 6,432
GTAAGGCTCTTTGGGTCTGGGGTAA..........TTCCTTTTTCTTAACAAACAATTAG
4 EXON 4 40,111,955 40,112,136 2 - 182
AAACGCATCCCACTGTGAGCAAATGTCTGTGGAACTCAAGGTCTTTAAGAATACTGAAGC
ATCTCTGCCTCATGTCTCCTACTTGCAAATCTCAGCTCTCTCCACCACGGGGTTACTAGT
GTGCCCTGACCTGAAAGAATTCATCTCCAGCAACGCTGATGGAAAGATACAGTGGTATAA
GG
3' upstream sequence
TAATGCTTTCAAAATGCATATGCCACAAAAATATCTCAATGGTTGTAGAACACATATGTA
AAAATCTGTTTGAAGACAATATATTTGTGTAGACACACAGATAATTATGTATTTAGAAAT
ATAAGATTAATTAAAATGGCGATGATTAGATTAGTATTGTATGGTTTGGATAAGGGTCAT
GCAGGCAGAGTGTGAAATGATTTCAGAGTCAATAGCTGCTAAAGAGCTTTTTGAGTGTCA
CTTGCCTAAAAATAACTAGGAAAAACTGCTCAAAACAACCCTGTTAATTTTTTACAAAAA
TTTTATATCCATGTTTAAGATATCTTTTTTATTTTTAAAGCACAAGGCAACTTTTGGGTT
GCAGGAATAAATACTGTTGCAGTGTCTCCTTTGTATCCTTAAGAAAAGTAGCAAATATTT
TATGGCTTCTTTGTGAGGTCATTGCTTTTTTTAGGAGACATTGTTGTTTACAGCGCAGGC
TGCAAATTATAGCCTAGAGCTATCATCTGTCTCTGTAACTCATCAAGTATGGAGAGTTTT
CAGGTTTTAAATGCTTGAAAAAAAATGAAAGGAATACTCAAGTGCATGTGACCATTGACT
AAGGCTCAGACTCCCATGTCCATAAGCACATTTGTATTGGGGCTCCCGTTTACGTATTTT
CTTTGTCTGTTCCACTGTGTAGTAAGACAGAGACCGTGTGGTCTATGAGGGCAATAAACT
ATGTCCCATCTGGCTCTTATCTGTAAGGACTTGCCCACCCCTGATTCAGACCATAGAGAG
ATGCTGAGAAGGCTTGTATTCCTTTAGTCATTGATAAGAGTTTGTCCTTTAATCAATAGG
TCAACCAGCTGATCGTCAGTATTAACATCAAGATGTGTACACACACACATGCACATATGT
ATGTGCACATATTTATATACACCGTAGCAATGCAATGCTGGAAACTTTAAAATGCCTTCC
TGAAAGTAGTTTGTGCCTATGGATAAGCCTGGGGAACCAC..........

Sequence Detail Report

Gene Symbol (Gene ID) Il1r2 (ENSMUSG00000026073)
Transcript ID ENSMUST00000191671
SNP Information
Strain :
Sequence Retrieve :
Exon translate :
CDS Start ( 1 ) - End ( 183 )
-
Strand : forward reverse
Show sequence : nucleotide amino acid
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